Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
HCH4g0303 ATGGCTTTTCGTTCAGCCTTCTTACTACTTCTGTTGCTTATATCAATAATCTCTTCTTGTCAATCGGTAGATACTGACCAGTCTCGGTTCTTTTTCCTCATTCAGAAGACTGTTTCAGGAAAGTTCCCTTCTGATTGGGATATTACAGAAGGGAAACCTCTCTGCAACTTCACTGGAATCCGATGCAATGGCCGGGGTGATGTTATTGGAATGGATATCTCTGGCTGGTCACTCTCTGGCAGCTTCCCAGTAGATGTGTGCTCTTACCTGCCAGAATTGAGAGTTCTTCGTCTCGCCGGTTCTGGTCTTCATGGAAGTTTTCCTCCAGGAGTCACCAACTGCTCTCTCCTGGAAGAACTTGCTATGAGTTCTTTGGATCTCACTGGACCAATCCCAGATTTTTCACAAATGAAACATCTGCGTGTACTTGACCTCTCATACAATCACTTCACGGGTGAATTTCCCATGTCAATTTTCGACCTCCCTAATCTCGAAGTGCTCAATTTCAATGAAAATGACAATCTAAACTTGTGGAGATTGCCCGATAAGATCACCGGGCTGAAAAAGCTCAAATCTATGATCTTAACGACCTGCATGTTAGATGGCGAAATCCCAAGATCAATAGGGAACATGACATCTCTAGTTGATCTTGAATTGAGTGGGAACTATCTCAAGGGAGAGATTCCAAAAGAAATTTCTTTGCTGAAGAACTTGCAACAGCTCGAACTCTATTATAATGAACTCGAAGGAAACATACCAGAGGAGCTGGGGAATCTAACAGAGCTTGTAGATATGGATATGTCTGTAAACCGTTTGACAGGAGAACTTCCAGAGTCGATTTGCCGCCTTCCCAAACTGAAAGTTCTGCAGATTTACAACAATAGCCTCACAGGAGAGATCCCAAGTGCATTAGCCAACTCAACAACCCTAACCATGCTGTCACTTTATGACAATTTTCTTACAGGACAAGTTCCACAACACTTGGGGAAACTATCACCTTTGGTTGTCCTTGACTTGTCTGAAAACAGTCTATCCGGTCCATTGCCATTAGAAATCTGCAGAGGAGGTGAATTGCTATACTTTCTTGTCCTGGAAAACAGGTTTTCTGGAGAAATCCCTGCAAATTATGCTGAATGTGAGTCACTTTTGCGGTTTAGACTTAGTTCCAATCACTTGGTTGGCACAATACCTGAAAAGCTTCTCGGTCTTCCCCATGTTTCAATAATTGATGTTGCTCACAATAACCTCACTGGCCCAATCTCAAACTCGATCCTACAGGCGAGAAACTTGTCAGAATTGTTCATGCAAAGAAACAAGTTTTCAGGAGTTATACCTCAGGAAATCTCAAGAGCAACCAATTTAGTGAAGCTTGATCTAAGCAACAATATTCTCTCTGGCCCAGTACCATCTGATATCGACAAATTGGAAAAGCTAAACTTGCTGCTCTTGCAAGGAAACAAGCTGAATTCTTCAATCCCCAATTCACTCTCATCACTAAAATCTCTCAACGTTCTCGATCTCTCCAACAATCAATTAACAGGAGAAATCCCAGAAAGCATGAGCAAACTATTCCCTAGTTCATTAAACTTCTCCAACAATCATCTCTCTGGTCCAATCCCACTCTTTCTAATCAAGCAAGGTTTGATAGAAAGCTTTTCAAACAACCCAGATCTCTGCATTCCATCCTACTTCATTTCCCCCAATCAAAAACTCCCCATTTGTTCACAATTCTCCATTCAAAAGAAACTCAATTACATCTGGGAAATCATAGTTCCAATTCTCCTCCTCTTAATCGTCATCGGATCAATCCTATTCCTAAAACACAAAATCACCAAAAAAACATCAAAAATCAAAACTCAACAACAAACCCTACCTTCCTCATTCTTCCACCATTCACAACCCTCCTTCACTCAAACACAAATCCTCCAATCCATGGTCCAAAAAAACATCATAGGTCAAGGAGGATCAGGAACAGTATACAAAATCGAACTCGAGAACGGCGAAACAGTGGCGGTAAAAAGACTACGAAATGAAAACCCTAGAAACCTCTTCGACAAGGAATTGAAAACCGAAGTAGAAACCCTAGGAAATATAAGGCATAATAATATAGTGAAATTGTATAGTTACTTATCGGGATTGAAACTCAATTGTAGTGTTTTGGTTTATGAATTTATGCCAAATGGAAATCTTTGGGAAGCGATTCATGGAGGAATGATTCATTTGGATTGGCTGAAACGGTACCGTATAGCCGCCGGAGTAGCGCGTGGATTGGCGTATCTTCATCACGATTTGTCGCCGCCGGTGATTCATAGAGATATTAAATCGATGAATATTTTGTTGGATGGCGATTATCAACCCAAAGTTGCTGATTTTGGAATTGCCAAGGTTTTGCAACGAACTAAGGATTCCACCAATTCTCATATCGCGGGAACCTACGGCTATCTTGCTCCCGAATATGCATATTCATCGAAAGCAACCATGAAATGCGATGTGTATAGTTATGGGGTGGTGTTAATGGAGCTGATATCAGGGAAGAAGCCAATAGAAGCAGAATATGGAGAGAATAAGAACATTGTTTTCTGGGTTTCAAATAAAGTTGACAAAAAGGAAGGAGTTTTGGAAATTCTTGACAAGAGATTAAAAGGGTCATTCATGGAGGAGATGATTCAGTTTCTGAGGATTGCCATTCGTTGTACTTACAAGAATCCAGCTCTTCGTCCTTCCATGGAAGAAGTTGTTCATCTCTTGAATGAAGCAGATCCTTCCAAATTCTCAAATAACCCCAAAGAGATGATCACTTTTAATGGCGTGGTGTAG 2817 41.0 MAFRSAFLLLLLLISIISSCQSVDTDQSRFFFLIQKTVSGKFPSDWDITEGKPLCNFTGIRCNGRGDVIGMDISGWSLSGSFPVDVCSYLPELRVLRLAGSGLHGSFPPGVTNCSLLEELAMSSLDLTGPIPDFSQMKHLRVLDLSYNHFTGEFPMSIFDLPNLEVLNFNENDNLNLWRLPDKITGLKKLKSMILTTCMLDGEIPRSIGNMTSLVDLELSGNYLKGEIPKEISLLKNLQQLELYYNELEGNIPEELGNLTELVDMDMSVNRLTGELPESICRLPKLKVLQIYNNSLTGEIPSALANSTTLTMLSLYDNFLTGQVPQHLGKLSPLVVLDLSENSLSGPLPLEICRGGELLYFLVLENRFSGEIPANYAECESLLRFRLSSNHLVGTIPEKLLGLPHVSIIDVAHNNLTGPISNSILQARNLSELFMQRNKFSGVIPQEISRATNLVKLDLSNNILSGPVPSDIDKLEKLNLLLLQGNKLNSSIPNSLSSLKSLNVLDLSNNQLTGEIPESMSKLFPSSLNFSNNHLSGPIPLFLIKQGLIESFSNNPDLCIPSYFISPNQKLPICSQFSIQKKLNYIWEIIVPILLLLIVIGSILFLKHKITKKTSKIKTQQQTLPSSFFHHSQPSFTQTQILQSMVQKNIIGQGGSGTVYKIELENGETVAVKRLRNENPRNLFDKELKTEVETLGNIRHNNIVKLYSYLSGLKLNCSVLVYEFMPNGNLWEAIHGGMIHLDWLKRYRIAAGVARGLAYLHHDLSPPVIHRDIKSMNILLDGDYQPKVADFGIAKVLQRTKDSTNSHIAGTYGYLAPEYAYSSKATMKCDVYSYGVVLMELISGKKPIEAEYGENKNIVFWVSNKVDKKEGVLEILDKRLKGSFMEEMIQFLRIAIRCTYKNPALRPSMEEVVHLLNEADPSKFSNNPKEMITFNGVV 938
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 1977884 1981319 + evm.model.ptg000015l.303 HCH4g0303 542547
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
HCH4g0303 938 Gene3D Transferase(Phosphotransferase) domain 1 725 933 - -
HCH4g0303 938 SUPERFAMILY L domain-like 252 565 - -
HCH4g0303 938 SUPERFAMILY RNI-like 71 347 - -
HCH4g0303 938 SMART LRR_typ_2 283 307 IPR003591 -
HCH4g0303 938 SMART LRR_typ_2 499 523 IPR003591 -
HCH4g0303 938 SMART LRR_typ_2 137 161 IPR003591 -
HCH4g0303 938 SMART LRR_typ_2 235 259 IPR003591 -
HCH4g0303 938 SMART LRR_typ_2 331 355 IPR003591 -
HCH4g0303 938 SMART LRR_typ_2 90 114 IPR003591 -
HCH4g0303 938 Gene3D Ribonuclease Inhibitor 33 176 IPR032675 -
HCH4g0303 938 Pfam Protein kinase domain 647 914 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
HCH4g0303 938 PANTHER LEUCINE RICH REPEAT FAMILY PROTEIN, EXPRESSED 363 918 IPR051716 -
HCH4g0303 938 Gene3D Ribonuclease Inhibitor 290 568 IPR032675 -
HCH4g0303 938 FunFam leucine-rich repeat receptor-like protein kinase TDR 725 927 - -
HCH4g0303 938 Pfam Leucine Rich Repeat 139 160 IPR001611 GO:0005515(InterPro)
HCH4g0303 938 Pfam Leucine Rich Repeat 453 475 IPR001611 GO:0005515(InterPro)
HCH4g0303 938 Pfam Leucine Rich Repeat 334 353 IPR001611 GO:0005515(InterPro)
HCH4g0303 938 Pfam Leucine Rich Repeat 237 259 IPR001611 GO:0005515(InterPro)
HCH4g0303 938 Pfam Leucine Rich Repeat 285 306 IPR001611 GO:0005515(InterPro)
HCH4g0303 938 Pfam Leucine Rich Repeat 501 523 IPR001611 GO:0005515(InterPro)
HCH4g0303 938 Gene3D Ribonuclease Inhibitor 177 289 IPR032675 -
HCH4g0303 938 FunFam Leucine-rich repeat receptor-like protein kinase 177 279 - -
HCH4g0303 938 SUPERFAMILY Protein kinase-like (PK-like) 623 916 IPR011009 -
HCH4g0303 938 ProSitePatterns Serine/Threonine protein kinases active-site signature. 768 780 IPR008271 GO:0004672(InterPro)|GO:0006468(InterPro)
HCH4g0303 938 PRINTS Leucine-rich repeat signature 334 347 - -
HCH4g0303 938 PRINTS Leucine-rich repeat signature 499 512 - -
HCH4g0303 938 Gene3D Phosphorylase Kinase; domain 1 633 724 - -
HCH4g0303 938 FunFam Receptor protein-tyrosine kinase CEPR1 283 568 - -
HCH4g0303 938 SMART serkin_6 645 923 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
HCH4g0303 938 ProSiteProfiles Prokaryotic membrane lipoprotein lipid attachment site profile. 1 20 - -
HCH4g0303 938 ProSitePatterns Protein kinases ATP-binding region signature. 651 673 IPR017441 GO:0005524(InterPro)
HCH4g0303 938 ProSiteProfiles Leucine-rich repeat profile. 501 523 IPR001611 GO:0005515(InterPro)
HCH4g0303 938 ProSiteProfiles Protein kinase domain profile. 645 917 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
HCH12g0726 HCH-Chr12:4611859 HCH4g0303 HCH-Chr4:1977884 1.30E-183 dispersed
HCH13g0283 HCH-Chr13:1887932 HCH4g0303 HCH-Chr4:1977884 6.80E-84 dispersed
HCH4g0303 HCH-Chr4:1977884 HCH5g0129 HCH-Chr5:773621 2.80E-71 dispersed
HCH8g1403 HCH-Chr8:48719220 HCH4g0303 HCH-Chr4:1977884 6.50E-62 dispersed
HCH6g0371 HCH-Chr6:6302072 HCH4g0303 HCH-Chr4:1977884 1.20E-06 transposed
HCH12g0725 HCH-Chr12:4598042 HCH4g0303 HCH-Chr4:1977884 3.70E-82 wgd
HCH14g0408 HCH-Chr14:33088540 HCH4g0303 HCH-Chr4:1977884 1.60E-56 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
81440 PF00069 Pkinase 3.00E-49 CL0016 HCH PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
HCH4g0303 - - - 0.0