Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
HCH4g0313 ATGTTCAAAATTCCACTGCCATTACTCAAAATCCTGCTCCTTGTTTTCATCTTCCACTTCATTTCCATACCATTCCATGTAAATTCTCAAGCTATCAGTACAGAACCAGCCATCTTACTGAAGCTTAAGGAACAATGGGGGAATCCACCATCTCTCCACTTATGGAGGAACTCCTCATCCTCCCCCTGTGACTGGCCTCACATCATCTGTACAGATGGTGCCGTCACCGGTATCACTCTTCGAGATCAAAACATCACTGGAAAAATCCCAGCTGTCTTATGTCACCTGAAAAACCTCACTGTGCTTGACCTTTCATGGAACTACATCCCTGGTGAGTTCCCTGAAGTTCTATACAACTGCTCCAAGCTCAAATATCTTGACCTTTCAGAAAACTATTTTGTGGGGCAGTTACCACAAGATATAGAACGAATCCAAACTCTGCAATACGTAGACCTTAGCGCCAACAACTTCTCTCACGATATTCCGGCCTCAATAGGCCGATTACCGGATTTGAGAATGTTGAACATTAATCAAAATCGGTTCAATGGCACATTTCCTGTGGAGATTGGCAACTTGTCCAATCTTGAGTTCTTGCAGATGGCATATATCACACAGCTGGTTCCATCATCGATACCACGAGAATTCGGGAGACTGAAGAAGTTGAAGTTCATGTGGATGACGAAATCAAATTTGGTTGGTGAAATCCCAGAAAGCCTATCAGATCTTCAGAGCCTTGAGCACTTGGACTTATCCAGGAACAACTTGGTAGGCCCCATTCCTGCTGGGTTGTTTTCTTTGCAGAATTTAAGCAAATTATATCTCTACCAAAATAAGTTGTCTGGAGAGATAGCCGAACCAATCCGAGCATCGAATTTGCTAGCAATTGACCTCTCTATGAACAATCTAACTGGCACAATCCCAGAAGACATTGGGAAGTTACCAAAATTGAACGTCCTTAATCTGTTTGTGAATCGTTTGTCTGGTGAGATTCCAGAGAGTTTAGGACTAATACCTTCTCTAAAAGTTTTTCGCCTTTTTAACAACAACTTAACTGGAAGCTTACCACCAGAACTGGGCCTGCATTCGAATCTGGAAGCATTTGAGGTCTCAAACAATAATCTAAGTGGTAGGTTACCAGAACATCTTTGTAAAAATGGCGTCCTGCAAGGAATGGCTGCTTCTTCCAACAATCTTAACGGTGAATTGCCTCAATGGCTTGGTAACTGCAGGACACTGAGGACACTCCAGCTTTATAACAATAATTTTTCTGGTGAAATCCCTCCGGGGCTTTGGACTACTTTCAATATATCCAGCATCATGTTAGGTGGAAACTCATTTTCTGGCAAATTACCAAACAGCTTAGCTTGGAATCTTTCGAGGCTGCAACTCAATAACAACAAATTTTCAGGTCAAATTCCTGAAAATGTCTCTGCATGGAGAAACTTGGTTGTTCTTGATGTGGGCAACAATCTGCTTTCTGGTCAATTTCCTGAGGAATTGACTAGCCTTCCCCGTCTTAACTCACTCGTGTTGAGTGGAAATCAACTTTCCGGCCAGCTTCCATCGACAATTATGTCATGGAAATCCTTGACGACTCTAAATCTCTCAAGAAATGAACTTTCTGGCAAAATTCCAGCAGCTTTGGGTTCCCTTCCCAACCTCCTCTACTTGGATTTATCAGAAAACAATTTCTCAGATGAAATCCCACTGGAAATTGGCCACTTAAGATTGGCTTCACTGAACTTGTCTTCCAATCAGCTGTCAGGGAAAATCCCAGATGGGTTGGCGAATCTAGCCTATGAAAACAGCTTCTTGAATAATTCAAATCTCTGTACCACCACCAAATTACTTGACCTTCCCAGCTGTTACTCCGGACGAAGGAATTCGAAGGAACAGTCTAAACATCTTTCCCTCATTCTAGTTCTTAGTATCACCTTTCTCACATTCACTGTGTTCTGGACCTTCTTCCTTTATAGAGGATATCGTAGCAAGGATCGAGGATACCACCTTCACCTTGAGACGTGGAAGGTTACTTCATTCCAGAGATTGGAGTTCACAGAAGTGAATATCTTAACAAATTTGACAGAAACCAATCTGATTGGAAGTGGTGGATCAGGAAAAGTGTACTGCATTGATATCAACCATGCTGGTTACTATGTTGCTGTCAAAAGGATTTGGAGTAACAAGAAACTGAAGGAGAAGCTAGAGAAAGAATTTCAAGCAGAAGTTCGGATACTAGGCTCAATTCGACATTCTAACATAGTGAAGTTGTTATGCTGCATTTGGAATGAAAATTCAAAGCTCTTAGTTTATGAATACATGAAAAATCAGAGCCTAGATAAGTGGCTCCATGGAAAGAAGAAAAGGTCAATAGCAGCTATGACGGATGTTCATCAGTCTGTCTTAGACTGGCCAAAAAGGCTGAAGATTGCCATTGGGGCTGCACAAGGCCTCAGTTACATGCACCATGATTGCCCTACAATGATCATTCATCGAGATGTTAAGTCGAGTAATATCTTGTTGGACGGAGAGTTCCAGGCAAGGATAGCAGATTTTGGACTGGCCAAGATGTTGACCAAGCAGGGACAGCCTCACACTATGTCCGGGATAGCTGGATCTTTTGGTTACATAGCCCCAGAGTATGCCTATTCAACAAGAGTCAATGAGAAGATCGATGTCTATAGCTTTGGAGTTGTACTCCTAGAACTTGCAACAGGAAGGGAACCTAATAGTAGAAACGAGCACACAAGCCTAGCAGAATGGGCATGGCAGCAATATAGTGAAGGAAAGCCTATTATCAATGCCCTCGATGAGGAAATCAGAAAACCATGCAATTTGAAAGAGATGACTACTCTATTCAAACTTGGTTTAATTTGTACGAGCACATTACCTGAACTACGCCCTTCCATGAAGGAGGTTCTGCATATTCTATGCCGCTGCAGCACTCCAGAAGGTTGTGATAGGAGAACGCATGTATGTGAGTTTGATGCTGCTCCCCTCCTTGGCACTCCTATATAG 3018 42.45 MFKIPLPLLKILLLVFIFHFISIPFHVNSQAISTEPAILLKLKEQWGNPPSLHLWRNSSSSPCDWPHIICTDGAVTGITLRDQNITGKIPAVLCHLKNLTVLDLSWNYIPGEFPEVLYNCSKLKYLDLSENYFVGQLPQDIERIQTLQYVDLSANNFSHDIPASIGRLPDLRMLNINQNRFNGTFPVEIGNLSNLEFLQMAYITQLVPSSIPREFGRLKKLKFMWMTKSNLVGEIPESLSDLQSLEHLDLSRNNLVGPIPAGLFSLQNLSKLYLYQNKLSGEIAEPIRASNLLAIDLSMNNLTGTIPEDIGKLPKLNVLNLFVNRLSGEIPESLGLIPSLKVFRLFNNNLTGSLPPELGLHSNLEAFEVSNNNLSGRLPEHLCKNGVLQGMAASSNNLNGELPQWLGNCRTLRTLQLYNNNFSGEIPPGLWTTFNISSIMLGGNSFSGKLPNSLAWNLSRLQLNNNKFSGQIPENVSAWRNLVVLDVGNNLLSGQFPEELTSLPRLNSLVLSGNQLSGQLPSTIMSWKSLTTLNLSRNELSGKIPAALGSLPNLLYLDLSENNFSDEIPLEIGHLRLASLNLSSNQLSGKIPDGLANLAYENSFLNNSNLCTTTKLLDLPSCYSGRRNSKEQSKHLSLILVLSITFLTFTVFWTFFLYRGYRSKDRGYHLHLETWKVTSFQRLEFTEVNILTNLTETNLIGSGGSGKVYCIDINHAGYYVAVKRIWSNKKLKEKLEKEFQAEVRILGSIRHSNIVKLLCCIWNENSKLLVYEYMKNQSLDKWLHGKKKRSIAAMTDVHQSVLDWPKRLKIAIGAAQGLSYMHHDCPTMIIHRDVKSSNILLDGEFQARIADFGLAKMLTKQGQPHTMSGIAGSFGYIAPEYAYSTRVNEKIDVYSFGVVLLELATGREPNSRNEHTSLAEWAWQQYSEGKPIINALDEEIRKPCNLKEMTTLFKLGLICTSTLPELRPSMKEVLHILCRCSTPEGCDRRTHVCEFDAAPLLGTPI 1005
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 2041356 2044879 - evm.model.ptg000015l.313 HCH4g0313 542557
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
HCH4g0313 1005 ProSitePatterns Serine/Threonine protein kinases active-site signature. 829 841 IPR008271 GO:0004672(InterPro)|GO:0006468(InterPro)
HCH4g0313 1005 Pfam Leucine rich repeat 457 516 IPR001611 GO:0005515(InterPro)
HCH4g0313 1005 Pfam Leucine rich repeat 522 564 IPR001611 GO:0005515(InterPro)
HCH4g0313 1005 SUPERFAMILY Protein kinase-like (PK-like) 681 977 IPR011009 -
HCH4g0313 1005 FunFam Leucine-rich repeat receptor-like protein kinase PXL1 285 382 - -
HCH4g0313 1005 PANTHER LRR RECEPTOR-LIKE SERINE/THREONINE-PROTEIN KINASE-RELATED 16 979 IPR050647 -
HCH4g0313 1005 ProSiteProfiles Protein kinase domain profile. 694 978 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
HCH4g0313 1005 FunFam LRR receptor-like serine/threonine-protein kinase GSO1 385 625 - -
HCH4g0313 1005 Gene3D Ribonuclease Inhibitor 386 495 IPR032675 -
HCH4g0313 1005 Gene3D Ribonuclease Inhibitor 34 184 IPR032675 -
HCH4g0313 1005 Pfam Leucine Rich Repeat 291 313 IPR001611 GO:0005515(InterPro)
HCH4g0313 1005 Pfam Leucine Rich Repeat 363 384 IPR001611 GO:0005515(InterPro)
HCH4g0313 1005 Pfam Leucine Rich Repeat 147 168 IPR001611 GO:0005515(InterPro)
HCH4g0313 1005 Pfam Leucine Rich Repeat 577 598 IPR001611 GO:0005515(InterPro)
HCH4g0313 1005 Pfam Leucine Rich Repeat 122 142 IPR001611 GO:0005515(InterPro)
HCH4g0313 1005 Pfam Leucine Rich Repeat 244 266 IPR001611 GO:0005515(InterPro)
HCH4g0313 1005 Pfam Leucine Rich Repeat 412 431 IPR001611 GO:0005515(InterPro)
HCH4g0313 1005 Pfam Leucine Rich Repeat 339 359 IPR001611 GO:0005515(InterPro)
HCH4g0313 1005 Pfam Leucine Rich Repeat 98 120 IPR001611 GO:0005515(InterPro)
HCH4g0313 1005 FunFam LRR receptor-like serine/threonine-protein kinase ERECTA 200 283 - -
HCH4g0313 1005 SMART LRR_typ_2 337 361 IPR003591 -
HCH4g0313 1005 SMART LRR_typ_2 242 266 IPR003591 -
HCH4g0313 1005 SMART LRR_typ_2 96 120 IPR003591 -
HCH4g0313 1005 SMART LRR_typ_2 551 575 IPR003591 -
HCH4g0313 1005 SMART LRR_typ_2 168 192 IPR003591 -
HCH4g0313 1005 SMART LRR_typ_2 503 527 IPR003591 -
HCH4g0313 1005 Gene3D Phosphorylase Kinase; domain 1 668 773 - -
HCH4g0313 1005 Pfam Protein kinase domain 696 975 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
HCH4g0313 1005 FunFam Kinase family with leucine-rich repeat domain-containing protein 774 993 - -
HCH4g0313 1005 Pfam Leucine rich repeat N-terminal domain 34 71 IPR013210 -
HCH4g0313 1005 FunFam Receptor-like protein kinase HSL1 674 773 - -
HCH4g0313 1005 SUPERFAMILY RNI-like 289 605 - -
HCH4g0313 1005 SMART serkin_6 694 976 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
HCH4g0313 1005 FunFam Receptor-like protein kinase HSL1 isoform A 32 183 - -
HCH4g0313 1005 CDD STKc_IRAK 700 979 - -
HCH4g0313 1005 SUPERFAMILY L domain-like 41 381 - -
HCH4g0313 1005 Gene3D Transferase(Phosphotransferase) domain 1 774 992 - -
HCH4g0313 1005 ProSitePatterns Protein kinases ATP-binding region signature. 700 723 IPR017441 GO:0005524(InterPro)
HCH4g0313 1005 Gene3D Ribonuclease Inhibitor 185 288 IPR032675 -
HCH4g0313 1005 Gene3D Ribonuclease Inhibitor 496 618 IPR032675 -
HCH4g0313 1005 Gene3D Ribonuclease Inhibitor 289 385 IPR032675 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
HCH4g0313 HCH-Chr4:2041356 HCH8g0699 HCH-Chr8:43721223 6.20E-125 dispersed
HCH12g0726 HCH-Chr12:4611859 HCH4g0313 HCH-Chr4:2041356 2.50E-62 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
81441 PF00069 Pkinase 2.00E-45 CL0016 HCH PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
HCH4g0313 - - - 0.0