Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
HCH4g0320 ATGGAAGCGCCGGAGTATTTCCAATTCACCACCGAAAACCGCCACTCCTCCGATACCGATACCGGCGGTGGCGGCACTGAACATTTCATCGTCGAGGAACTTCTCGATTTCTCCAACGACGATTCTGATATCATTGCCGACGGTACAATATTTAACGGTAATTCGACGGAATCTTCCGCCATTACTGTGATTGAGAGCTGCAATTCGTCTTCGTTTTCCAGCTGTGAACCGAATTCGTTTTTAGATGGCGGGAATTTAACCGACAATCATTTATCCGGCGAACTCTGCGTGCCGTATGACGATTTAGCTGAGCTCGAATGGCTTTCAAATTTCGTGGAAGAATCATTTTCAAGCGAAGATTTGCAAAAACTAGAACTGATCTCGGGTATGAAAGTCAAATCGGACGAGACTTTCAAAACTCGAGAAATCACCACCACCACCATCACCACGACCGAAATATTAAAACCAAATAACAATAACAACATGATATCAATCCCGGCCAAAGCTGCACGTAGCAAACGGTCACGTAGTATTCCATGCAATTGGAACAACTCCCATATCCTCCCTCTCTCTCCAACAACCTCCTCATCCGAAACCAATATTATCAATATTCCTACTCCACCAATTTCCTTTCCGGACACCAAATTACTCCCCTTAAACGCTACGGCAAAGGATAAGGAGAAGGAAATGGATTATTATTCCTCTGAGACGGCCTTGTCATCCGGAGAAGGTGGTGGAGGTGGTCGTAAATGCATGCATTGTGCTACCGATAAGACGCCGCAATGGCGAACCGGTCCGATGGGACCGAAAACTCTTTGTAACGCTTGCGGCGTCCGGTTCAAATCCGGTCGGCTAGTGCCGGAGTACCGTCCTGCTGCTAGTCCGACTTTTGTTCTAACTAAACACTCAAATTCTCACCGGAAAGTGATGGAGCTCCGCCGGCAGAAGGAGGTTCTCAGGGTTGAGCAGCACCAGCGATTACTTCTTGATCATAGTCAGGATATGGTGTTTGACGGCGGCGATGATTACCTGATTCATCAACATATGGGGCCTGATTTCCGGCAGCTGATTTAA 1074 47.21 MEAPEYFQFTTENRHSSDTDTGGGGTEHFIVEELLDFSNDDSDIIADGTIFNGNSTESSAITVIESCNSSSFSSCEPNSFLDGGNLTDNHLSGELCVPYDDLAELEWLSNFVEESFSSEDLQKLELISGMKVKSDETFKTREITTTTITTTEILKPNNNNNMISIPAKAARSKRSRSIPCNWNNSHILPLSPTTSSSETNIINIPTPPISFPDTKLLPLNATAKDKEKEMDYYSSETALSSGEGGGGGRKCMHCATDKTPQWRTGPMGPKTLCNACGVRFKSGRLVPEYRPAASPTFVLTKHSNSHRKVMELRRQKEVLRVEQHQRLLLDHSQDMVFDGGDDYLIHQHMGPDFRQLI 357
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 2095260 2097295 - evm.model.ptg000015l.320 HCH4g0320 542564

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
HCH4g0320 357 SMART GATA_3 245 295 IPR000679 GO:0006355(InterPro)|GO:0043565(InterPro)
HCH4g0320 357 Gene3D - 245 321 IPR013088 GO:0006355(InterPro)|GO:0008270(InterPro)
HCH4g0320 357 ProSitePatterns GATA-type zinc finger domain. 251 276 IPR000679 GO:0006355(InterPro)|GO:0043565(InterPro)
HCH4g0320 357 ProSiteProfiles GATA-type zinc finger domain profile. 245 281 IPR000679 GO:0006355(InterPro)|GO:0043565(InterPro)
HCH4g0320 357 FunFam GATA transcription factor 242 326 - -
HCH4g0320 357 MobiDBLite consensus disorder prediction 1 24 - -
HCH4g0320 357 Pfam GATA zinc finger 251 285 IPR000679 GO:0006355(InterPro)|GO:0043565(InterPro)
HCH4g0320 357 SUPERFAMILY Glucocorticoid receptor-like (DNA-binding domain) 247 309 - -
HCH4g0320 357 CDD ZnF_GATA 250 297 IPR000679 GO:0006355(InterPro)|GO:0043565(InterPro)
HCH4g0320 357 MobiDBLite consensus disorder prediction 9 23 - -
HCH4g0320 357 PIRSF Txn_fac_GATA_plant 11 338 IPR016679 GO:0003677(InterPro)|GO:0005634(InterPro)|GO:0045893(InterPro)
HCH4g0320 357 PANTHER GATA TRANSCRIPTION FACTOR 29 317 IPR051140 GO:0005634(PANTHER)|GO:0030154(PANTHER)
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
HCH4g0320 - - - - 0.0
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
HCH1g0673 HCH-Chr1:55631954 HCH4g0320 HCH-Chr4:2095260 3.70E-37 dispersed
HCH2g0495 HCH-Chr2:48563247 HCH4g0320 HCH-Chr4:2095260 7.90E-30 dispersed
HCH4g0320 HCH-Chr4:2095260 HCH4g1427 HCH-Chr4:10471747 2.40E-63 dispersed
HCH12g0746 HCH-Chr12:4758232 HCH4g0320 HCH-Chr4:2095260 1.20E-85 wgd
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
HCH12g0746 . 33 334 C2C2-Gata Transcription Factor Family AT5G25830 51.4 2.4e-73 272.7
HCH4g0320 . 69 357 C2C2-Gata Transcription Factor Family AT5G25830 51.7 1.4e-65 246.9
HCH13g1375 . 24 292 C2C2-Gata Transcription Factor Family AT3G51080 50.9 6.8e-54 208.0
HCH14g0625 . 92 269 C2C2-Gata Transcription Factor Family AT4G36240 51.9 8.6e-41 164.1
HCH5g0328 . 1 516 C2C2-Gata Transcription Factor Family AT4G17570 52.7 2.0e-135 479.6
HCH6g1060 . 1 515 C2C2-Gata Transcription Factor Family AT4G17570 50.8 9.9e-127 450.7
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0002406 3 2 1 1 0 1 2 2 2 2 2 2 3 2 2 3 2 2 3 2 2 2 2 2 2 2 2 4 2 1 60
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
33415 PF00320 GATA 1.70E-15 CL0167 HCH TF