Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
HCH4g0320 ATGGAAGCGCCGGAGTATTTCCAATTCACCACCGAAAACCGCCACTCCTCCGATACCGATACCGGCGGTGGCGGCACTGAACATTTCATCGTCGAGGAACTTCTCGATTTCTCCAACGACGATTCTGATATCATTGCCGACGGTACAATATTTAACGGTAATTCGACGGAATCTTCCGCCATTACTGTGATTGAGAGCTGCAATTCGTCTTCGTTTTCCAGCTGTGAACCGAATTCGTTTTTAGATGGCGGGAATTTAACCGACAATCATTTATCCGGCGAACTCTGCGTGCCGTATGACGATTTAGCTGAGCTCGAATGGCTTTCAAATTTCGTGGAAGAATCATTTTCAAGCGAAGATTTGCAAAAACTAGAACTGATCTCGGGTATGAAAGTCAAATCGGACGAGACTTTCAAAACTCGAGAAATCACCACCACCACCATCACCACGACCGAAATATTAAAACCAAATAACAATAACAACATGATATCAATCCCGGCCAAAGCTGCACGTAGCAAACGGTCACGTAGTATTCCATGCAATTGGAACAACTCCCATATCCTCCCTCTCTCTCCAACAACCTCCTCATCCGAAACCAATATTATCAATATTCCTACTCCACCAATTTCCTTTCCGGACACCAAATTACTCCCCTTAAACGCTACGGCAAAGGATAAGGAGAAGGAAATGGATTATTATTCCTCTGAGACGGCCTTGTCATCCGGAGAAGGTGGTGGAGGTGGTCGTAAATGCATGCATTGTGCTACCGATAAGACGCCGCAATGGCGAACCGGTCCGATGGGACCGAAAACTCTTTGTAACGCTTGCGGCGTCCGGTTCAAATCCGGTCGGCTAGTGCCGGAGTACCGTCCTGCTGCTAGTCCGACTTTTGTTCTAACTAAACACTCAAATTCTCACCGGAAAGTGATGGAGCTCCGCCGGCAGAAGGAGGTTCTCAGGGTTGAGCAGCACCAGCGATTACTTCTTGATCATAGTCAGGATATGGTGTTTGACGGCGGCGATGATTACCTGATTCATCAACATATGGGGCCTGATTTCCGGCAGCTGATTTAA 1074 47.21 MEAPEYFQFTTENRHSSDTDTGGGGTEHFIVEELLDFSNDDSDIIADGTIFNGNSTESSAITVIESCNSSSFSSCEPNSFLDGGNLTDNHLSGELCVPYDDLAELEWLSNFVEESFSSEDLQKLELISGMKVKSDETFKTREITTTTITTTEILKPNNNNNMISIPAKAARSKRSRSIPCNWNNSHILPLSPTTSSSETNIINIPTPPISFPDTKLLPLNATAKDKEKEMDYYSSETALSSGEGGGGGRKCMHCATDKTPQWRTGPMGPKTLCNACGVRFKSGRLVPEYRPAASPTFVLTKHSNSHRKVMELRRQKEVLRVEQHQRLLLDHSQDMVFDGGDDYLIHQHMGPDFRQLI 357
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 2095260 2097295 - evm.model.ptg000015l.320 HCH4g0320 542564
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
HCH4g0320 357 SMART GATA_3 245 295 IPR000679 GO:0006355(InterPro)|GO:0043565(InterPro)
HCH4g0320 357 Gene3D - 245 321 IPR013088 GO:0006355(InterPro)|GO:0008270(InterPro)
HCH4g0320 357 ProSitePatterns GATA-type zinc finger domain. 251 276 IPR000679 GO:0006355(InterPro)|GO:0043565(InterPro)
HCH4g0320 357 ProSiteProfiles GATA-type zinc finger domain profile. 245 281 IPR000679 GO:0006355(InterPro)|GO:0043565(InterPro)
HCH4g0320 357 FunFam GATA transcription factor 242 326 - -
HCH4g0320 357 MobiDBLite consensus disorder prediction 1 24 - -
HCH4g0320 357 Pfam GATA zinc finger 251 285 IPR000679 GO:0006355(InterPro)|GO:0043565(InterPro)
HCH4g0320 357 SUPERFAMILY Glucocorticoid receptor-like (DNA-binding domain) 247 309 - -
HCH4g0320 357 CDD ZnF_GATA 250 297 IPR000679 GO:0006355(InterPro)|GO:0043565(InterPro)
HCH4g0320 357 MobiDBLite consensus disorder prediction 9 23 - -
HCH4g0320 357 PIRSF Txn_fac_GATA_plant 11 338 IPR016679 GO:0003677(InterPro)|GO:0005634(InterPro)|GO:0045893(InterPro)
HCH4g0320 357 PANTHER GATA TRANSCRIPTION FACTOR 29 317 IPR051140 GO:0005634(PANTHER)|GO:0030154(PANTHER)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
HCH1g0673 HCH-Chr1:55631954 HCH4g0320 HCH-Chr4:2095260 3.70E-37 dispersed
HCH2g0495 HCH-Chr2:48563247 HCH4g0320 HCH-Chr4:2095260 7.90E-30 dispersed
HCH4g0320 HCH-Chr4:2095260 HCH4g1427 HCH-Chr4:10471747 2.40E-63 dispersed
HCH12g0746 HCH-Chr12:4758232 HCH4g0320 HCH-Chr4:2095260 1.20E-85 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
33415 PF00320 GATA 1.70E-15 CL0167 HCH TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
HCH4g0320 - - - 0.0