Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
HCH4g0333 ATGGGCTCTGAAAGTAGCACTACTACTACTTCTTCAAATTCGAATTCAAATTCAAATTCAAATTTGGAATTGAAGAAAATAAAACGTAACAGAGATTCAAGCAAGCATCCAGTGTTCAGAGGCGTACGAATGCGTAATTGGGGTAAATGGGTGTCTGAAATTCGTGAACCGAGGAAGAAATCTCGTATTTGGTTAGGAACTTTTCCAACACCAGAAATGGCTGCTAGAGCACATGACGTGGCTGCCTTAAGCATCAAAGGAAACTCAGCGATTCTTAATTTTCCCGAACTTGTGGAGTTGCTACCTCGCCCTGTTTCTCTTGCCCCACGTGATGTTCAAGCTGCTGCTGCCAAGGCTGCTCATATGGAGAATTTCGATTCTCCTTCCCCCCCATTGTCGAATTCTTCATCGTCATCGTCTTCGTCTTCGAGGGACTTAACGACGACGGTGACGACGGAGGAGGAGGAGGAAGAGTTGAGTGAGATTGTGGAGTTACCAAATTTGGGAGAGGAATCGAGCAATGATACTGTATACGTTGATCCATTGGAAGCTGGTTGGTTATATAAATATTATCCACCACCATGGCTCCAGAATTTGGAAGATGATCAACATGATAATATTGGTTTTATATCAACCAGTTTCAAGGGATTATTGTGGGATTCATTTGATCATTAA 675 42.52 MGSESSTTTTSSNSNSNSNSNLELKKIKRNRDSSKHPVFRGVRMRNWGKWVSEIREPRKKSRIWLGTFPTPEMAARAHDVAALSIKGNSAILNFPELVELLPRPVSLAPRDVQAAAAKAAHMENFDSPSPPLSNSSSSSSSSSRDLTTTVTTEEEEEELSEIVELPNLGEESSNDTVYVDPLEAGWLYKYYPPPWLQNLEDDQHDNIGFISTSFKGLLWDSFDH 224
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 2187450 2188124 - evm.model.ptg000015l.333 HCH4g0333 542577
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
HCH4g0333 224 Pfam AP2 domain 37 87 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
HCH4g0333 224 FunFam Ethylene-responsive transcription factor 2 37 96 - -
HCH4g0333 224 MobiDBLite consensus disorder prediction 127 148 - -
HCH4g0333 224 PANTHER ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR ERF042-RELATED 12 174 IPR051032 -
HCH4g0333 224 MobiDBLite consensus disorder prediction 1 23 - -
HCH4g0333 224 Gene3D AP2/ERF domain 38 97 IPR036955 GO:0003700(InterPro)|GO:0006355(InterPro)
HCH4g0333 224 MobiDBLite consensus disorder prediction 118 160 - -
HCH4g0333 224 ProSiteProfiles AP2/ERF domain profile. 38 95 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
HCH4g0333 224 SMART rav1_2 38 101 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
HCH4g0333 224 CDD AP2 39 97 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
HCH4g0333 224 PRINTS Ethylene responsive element binding protein signature 61 77 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
HCH4g0333 224 PRINTS Ethylene responsive element binding protein signature 39 50 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
HCH4g0333 224 MobiDBLite consensus disorder prediction 1 37 - -
HCH4g0333 224 SUPERFAMILY DNA-binding domain 38 96 IPR016177 GO:0003677(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
HCH4g0333 HCH-Chr4:2187450 HCH8g0715 HCH-Chr8:43891189 1.70E-51 dispersed
HCH12g0749 HCH-Chr12:4783656 HCH4g0333 HCH-Chr4:2187450 1.00E-48 wgd
HCH4g0333 HCH-Chr4:2187450 HCH4g1420 HCH-Chr4:10429685 7.30E-42 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
33416 PF00847 AP2 6.90E-14 CL0081 HCH TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
HCH4g0333 K09286 - vvi:100268038 232.261