Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
HCH4g0334 ATGGCCAAAATTGCTCTGGGAAGCACCGGTGAGGCCGTCCAACCCGACTGCCTCCGAGCCCTCGTTGTTGAGTTTATCACCACCTTCCTCTTCGTCTTCGTCGGGGTTGGATCCTCTATGGCTGCTGATAAGTTATTGGCAAATACATTGGTGGGGTTATTCGCTGTCGCCGTGGCACATGCATTTGTCGTAGCTGTGATGATCTCCGCCGGCCACATTTCAGGTGGCCACCTTAATCCGGCCGTCACACTTGGTCTTCTCGCCGGTGGCCACATCACGGTTGTCCGATCCATTCTTTATTGGATCGATCAATTGGTAGCTTCTTCGGCTGCTTGTTTTCTACTAGCGTATCTTACCGGAGGCTCGACTACTCCAATTCATTCACTAGCAAGTGGGGTGGGCTCAGTCCAAGGAGTGATATGGGAGATAATTCTCACCTTCTCCTTGCTCTTCACTGTCTATGCCACAATAGTAGATCCAAAGAAGGGGTCACTTGATGGGCTGGGCCCATTGTTGACTGGGTTTGTAGTTGGAGCTAACATCTTGGCTGGTGGGCCTTTCTCTGGAGCCTCAATGAACCCAGCAAGATCATTTGGGCCAGCATTGGTATCTGGAAACTGGACTGACCATTGGGTTTATTGGGTTGGGCCTCTCATTGGTGGTGGGCTTTCTGGCTTCATATATGAAAACGTCTTCATTGATAGATCTCATGTCCCTCTGCCTAGGGCAGAAGATTAA 738 50.54 MAKIALGSTGEAVQPDCLRALVVEFITTFLFVFVGVGSSMAADKLLANTLVGLFAVAVAHAFVVAVMISAGHISGGHLNPAVTLGLLAGGHITVVRSILYWIDQLVASSAACFLLAYLTGGSTTPIHSLASGVGSVQGVIWEIILTFSLLFTVYATIVDPKKGSLDGLGPLLTGFVVGANILAGGPFSGASMNPARSFGPALVSGNWTDHWVYWVGPLIGGGLSGFIYENVFIDRSHVPLPRAED 245
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 2195407 2196926 - evm.model.ptg000015l.334 HCH4g0334 542578
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
HCH4g0334 245 FunFam Probable aquaporin TIP1-1 2 244 - -
HCH4g0334 245 Gene3D Glycerol uptake facilitator protein. 2 242 IPR023271 -
HCH4g0334 245 Pfam Major intrinsic protein 13 228 IPR000425 GO:0015267(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro)
HCH4g0334 245 ProSitePatterns MIP family signature. 77 85 IPR022357 -
HCH4g0334 245 PRINTS Major intrinsic protein family signature 174 196 IPR000425 GO:0015267(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro)
HCH4g0334 245 PRINTS Major intrinsic protein family signature 141 159 IPR000425 GO:0015267(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro)
HCH4g0334 245 PRINTS Major intrinsic protein family signature 19 38 IPR000425 GO:0015267(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro)
HCH4g0334 245 PRINTS Major intrinsic protein family signature 96 115 IPR000425 GO:0015267(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro)
HCH4g0334 245 PRINTS Major intrinsic protein family signature 59 83 IPR000425 GO:0015267(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro)
HCH4g0334 245 PRINTS Major intrinsic protein family signature 211 231 IPR000425 GO:0015267(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro)
HCH4g0334 245 CDD MIP 19 231 IPR000425 GO:0015267(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro)
HCH4g0334 245 SUPERFAMILY Aquaporin-like 13 240 IPR023271 -
HCH4g0334 245 PANTHER AQUAPORIN-8 1 238 IPR034294 GO:0006833(PANTHER)|GO:0015250(PANTHER)|GO:0016020(PANTHER)
HCH4g0334 245 NCBIfam MIP family channel protein 24 228 IPR000425 GO:0015267(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
HCH4g0334 HCH-Chr4:2195407 HCH5g0367 HCH-Chr5:2387645 3.30E-72 dispersed
HCH4g0334 HCH-Chr4:2195407 HCH4g1415 HCH-Chr4:10392737 3.90E-73 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
HCH4g0334 K09873 - cit:102611770 418.698