Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
HCH4g0334 | ATGGCCAAAATTGCTCTGGGAAGCACCGGTGAGGCCGTCCAACCCGACTGCCTCCGAGCCCTCGTTGTTGAGTTTATCACCACCTTCCTCTTCGTCTTCGTCGGGGTTGGATCCTCTATGGCTGCTGATAAGTTATTGGCAAATACATTGGTGGGGTTATTCGCTGTCGCCGTGGCACATGCATTTGTCGTAGCTGTGATGATCTCCGCCGGCCACATTTCAGGTGGCCACCTTAATCCGGCCGTCACACTTGGTCTTCTCGCCGGTGGCCACATCACGGTTGTCCGATCCATTCTTTATTGGATCGATCAATTGGTAGCTTCTTCGGCTGCTTGTTTTCTACTAGCGTATCTTACCGGAGGCTCGACTACTCCAATTCATTCACTAGCAAGTGGGGTGGGCTCAGTCCAAGGAGTGATATGGGAGATAATTCTCACCTTCTCCTTGCTCTTCACTGTCTATGCCACAATAGTAGATCCAAAGAAGGGGTCACTTGATGGGCTGGGCCCATTGTTGACTGGGTTTGTAGTTGGAGCTAACATCTTGGCTGGTGGGCCTTTCTCTGGAGCCTCAATGAACCCAGCAAGATCATTTGGGCCAGCATTGGTATCTGGAAACTGGACTGACCATTGGGTTTATTGGGTTGGGCCTCTCATTGGTGGTGGGCTTTCTGGCTTCATATATGAAAACGTCTTCATTGATAGATCTCATGTCCCTCTGCCTAGGGCAGAAGATTAA | 738 | 50.54 | MAKIALGSTGEAVQPDCLRALVVEFITTFLFVFVGVGSSMAADKLLANTLVGLFAVAVAHAFVVAVMISAGHISGGHLNPAVTLGLLAGGHITVVRSILYWIDQLVASSAACFLLAYLTGGSTTPIHSLASGVGSVQGVIWEIILTFSLLFTVYATIVDPKKGSLDGLGPLLTGFVVGANILAGGPFSGASMNPARSFGPALVSGNWTDHWVYWVGPLIGGGLSGFIYENVFIDRSHVPLPRAED | 245 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
4 | 2195407 | 2196926 | - | evm.model.ptg000015l.334 | HCH4g0334 | 542578 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
HCH4g0334 | 245 | FunFam | Probable aquaporin TIP1-1 | 2 | 244 | - | - | |
HCH4g0334 | 245 | Gene3D | Glycerol uptake facilitator protein. | 2 | 242 | IPR023271 | - | |
HCH4g0334 | 245 | Pfam | Major intrinsic protein | 13 | 228 | IPR000425 | GO:0015267(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro) | |
HCH4g0334 | 245 | ProSitePatterns | MIP family signature. | 77 | 85 | IPR022357 | - | |
HCH4g0334 | 245 | PRINTS | Major intrinsic protein family signature | 174 | 196 | IPR000425 | GO:0015267(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro) | |
HCH4g0334 | 245 | PRINTS | Major intrinsic protein family signature | 141 | 159 | IPR000425 | GO:0015267(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro) | |
HCH4g0334 | 245 | PRINTS | Major intrinsic protein family signature | 19 | 38 | IPR000425 | GO:0015267(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro) | |
HCH4g0334 | 245 | PRINTS | Major intrinsic protein family signature | 96 | 115 | IPR000425 | GO:0015267(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro) | |
HCH4g0334 | 245 | PRINTS | Major intrinsic protein family signature | 59 | 83 | IPR000425 | GO:0015267(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro) | |
HCH4g0334 | 245 | PRINTS | Major intrinsic protein family signature | 211 | 231 | IPR000425 | GO:0015267(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro) | |
HCH4g0334 | 245 | CDD | MIP | 19 | 231 | IPR000425 | GO:0015267(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro) | |
HCH4g0334 | 245 | SUPERFAMILY | Aquaporin-like | 13 | 240 | IPR023271 | - | |
HCH4g0334 | 245 | PANTHER | AQUAPORIN-8 | 1 | 238 | IPR034294 | GO:0006833(PANTHER)|GO:0015250(PANTHER)|GO:0016020(PANTHER) | |
HCH4g0334 | 245 | NCBIfam | MIP family channel protein | 24 | 228 | IPR000425 | GO:0015267(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro) |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
HCH4g0334 | HCH-Chr4:2195407 | HCH5g0367 | HCH-Chr5:2387645 | 3.30E-72 | dispersed | |
HCH4g0334 | HCH-Chr4:2195407 | HCH4g1415 | HCH-Chr4:10392737 | 3.90E-73 | wgd |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
HCH4g0334 | K09873 | - | cit:102611770 | 418.698 |