Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
HCH4g0366 ATGGAGGTAGTGGGAGAGAATGAATTGTTGGCAGTAGCTATAGACAAAGATAAAGGCAGCCAAAATGCTCTTAAATGGGCCATTGAGAATCTCCTTCACAAGGGTCAATTTATCATTCTCCTTCATGTCAAGCTCAGAACTTCCTCTCTCAACTCTCCTCTGCCTTCGCCCAGATTGATCTCTGCAAGTGATGGTGTTAATGGCAATAATTTGATGAACAACGACATCGATCCAAACATGAGGGAATTGTTCCTTCCTTTTCGTTGCTTTTGTACTCGTAAAGATATATACTGCAAAGATGTGATGATAGAAGACGTAGATGTTGCAAAAGGATTGATTGAATGCGTCTCTCAATTTTCAATTAAAACTTTGGTTGTTGGTGCCACAACTAGAAATGGCTTCTTGAGAAAATTCAAGGCAACAGATATTCCTGGTAGCACGATCAAAGGAGCACCAGATTTTTGCAATGTTTATGTCATATCAAGAGGAAAAATTCAAAGTATGCGTTCGGCCTCACGCCCGGTGCCTTCGGGAAATCCTAATTTCCTTCATAATCAACCCAACATCGGATCAGAAGGACCAGACAAACAAATTTCTCAGCCTCAGCCTCAGACTCAGACTCAGACTCAGAGTATGAGAATTCAGTTTTTCCCCCCTTCATTATGTCAAGAGAGGTTTACTGAGCAAGTTGTGTTTCGGAGCAGGTCACCGTTCACTCGGAAAGGCTATAACGGCAAAATGCCTGGGGAAATGCCTCTGCCAGATACTGATATTTCTTTTGTAAGCTCGGGAAGACCGAGCATTGATCGAATGTTCCCTACAATCTTTGACACCCCAGATTCTGGAAGGGTCACCCCGCAGCTATACAGTAGTGAAGCTGAGATGTTTAACAGCTTTGAGTCGCAGCACTTTGCGCGTAGGTCAGTGGACGTAAACTATCCGCCCGAAATTTTATCAATGTTGCAGGAAGGCGACAGATCATCAACTTCATCACATTCACAAACTATGGATGAAGTAGAGGCTGAGATGAGAAGGCTAAAACTGGAACTAAAGCAAACTATGGAGATGTATAGCACAGCTTGCAGGGAAGCACTTACAGCAAAGCAAAAGGCGAAAGAGCTTCAGCGATGGAAATCAGAGGAACAACGGAGACTAGAGGAGGCAAGACTTGCAGAGGAAGCTGCATTAATAATTGTCGAACGGGAAAAGGCAAAATCTAGAGCTGCAATTGAGGCTGCTGAAGCAGCTAAAAGGATTGCAGAGTTGGAAGCACATAAGAGAATTAAAGCAGAATTGACAGCATTCAGAGAAGCAGAAGAGAAAAAGAAAGCGCTTGATGCTTTGGCACACACGGACGTTCGGTATCGAAGGTACTCAATCGAGGAGATTGAATCTGCGACCGAGTTCTTTTCAGAATCTCTTAAGATTGGAGAGGGAGGTTATGGGCCTGTATACAAGGGTTACCTGGACCACACACCAGTTGCAATTAAGGTTTTACGTCCAGATGCAGCACAAGGAAGGTCACAGTTTCAACAAGAGGTTGAAGTACTGAGCTGCATACGCCATCCTAACATGGTTCTTCTCCTTGGAGCATGCCCCGAGTATGGCTGCTTAGTCTATGAGTTCATGGCGAATGGTAGCTTGGAAGATTGTCTCTTTTGTCGGCCAGATAGAAAACCTCTTTCTTGGCAGCTAAGATTTAAAATTGCAGCTGAAATTGGCACTTCCTTGTTGTTCCTCCATCAAACCAAGCCAGAGCCGCTTGTGCATCGTGATTTGAAACCTGCCAATATTCTGCTCGACTGTAACTTTGTTAGCAAGATTAGTGATGTTGGATTGGCTAGGCTTGTTCCCCCATCTGTAGCAGACAGTGTGACACAGTATAGGTTGACATCAACTGCTGGCACTTTCTGCTACATCGATCCTGAGTACCAACAGACAGGCATGCTTGGCGTAAAGTCTGACATATATTCTTTGGGAATCATGTATCTGCAACTGCTTACAGGCAAGCCAGCCATGGGTTTGACTCACCATGTTGGAAGAGCTATTGAAAAAGGGATATTAACCGAAATTCTCGACCCAACCGTGCCCGATTGGCCATTTGAAGAGGCCTTATCCTTCGCCAAACTGGCTCTAAACTGTGCAGAGTTAAGGCGGAAAGACAGACCCGATCTTAGCAAGGTTGTCCTCCCAGAACTTATCAGGTTACGATCAATCGCTGAAACCTGCCCGTTCCCATCGTTGACGGATGGTGTCAGCAGCCCCCGATACAATCACAGTCAGGTTTCTCTCCATCATGATGTAAGCGGTTACCATTTCTCCTCACATTCTTGCAACAGCTCAAGAGTTTTCTCAGAGACAAGATCATAG 2370 44.73 MEVVGENELLAVAIDKDKGSQNALKWAIENLLHKGQFIILLHVKLRTSSLNSPLPSPRLISASDGVNGNNLMNNDIDPNMRELFLPFRCFCTRKDIYCKDVMIEDVDVAKGLIECVSQFSIKTLVVGATTRNGFLRKFKATDIPGSTIKGAPDFCNVYVISRGKIQSMRSASRPVPSGNPNFLHNQPNIGSEGPDKQISQPQPQTQTQTQSMRIQFFPPSLCQERFTEQVVFRSRSPFTRKGYNGKMPGEMPLPDTDISFVSSGRPSIDRMFPTIFDTPDSGRVTPQLYSSEAEMFNSFESQHFARRSVDVNYPPEILSMLQEGDRSSTSSHSQTMDEVEAEMRRLKLELKQTMEMYSTACREALTAKQKAKELQRWKSEEQRRLEEARLAEEAALIIVEREKAKSRAAIEAAEAAKRIAELEAHKRIKAELTAFREAEEKKKALDALAHTDVRYRRYSIEEIESATEFFSESLKIGEGGYGPVYKGYLDHTPVAIKVLRPDAAQGRSQFQQEVEVLSCIRHPNMVLLLGACPEYGCLVYEFMANGSLEDCLFCRPDRKPLSWQLRFKIAAEIGTSLLFLHQTKPEPLVHRDLKPANILLDCNFVSKISDVGLARLVPPSVADSVTQYRLTSTAGTFCYIDPEYQQTGMLGVKSDIYSLGIMYLQLLTGKPAMGLTHHVGRAIEKGILTEILDPTVPDWPFEEALSFAKLALNCAELRRKDRPDLSKVVLPELIRLRSIAETCPFPSLTDGVSSPRYNHSQVSLHHDVSGYHFSSHSCNSSRVFSETRS 789
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 2415927 2419670 + evm.model.ptg000015l.366 HCH4g0366 542610
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
HCH4g0366 789 CDD STK_N 11 163 - -
HCH4g0366 789 Coils Coil 329 356 - -
HCH4g0366 789 ProSitePatterns Serine/Threonine protein kinases active-site signature. 588 600 IPR008271 GO:0004672(InterPro)|GO:0006468(InterPro)
HCH4g0366 789 MobiDBLite consensus disorder prediction 169 208 - -
HCH4g0366 789 SUPERFAMILY Adenine nucleotide alpha hydrolases-like 12 134 - -
HCH4g0366 789 PANTHER OS02G0152300 PROTEIN 11 763 IPR051348 -
HCH4g0366 789 ProSiteProfiles Protein kinase domain profile. 470 734 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
HCH4g0366 789 Gene3D Transferase(Phosphotransferase) domain 1 543 742 - -
HCH4g0366 789 Gene3D HUPs 9 149 IPR014729 -
HCH4g0366 789 Gene3D Phosphorylase Kinase; domain 1 448 542 - -
HCH4g0366 789 Pfam Protein kinase domain 473 728 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
HCH4g0366 789 FunFam Adenine nucleotide alpha hydrolase-like domain kinase 442 542 - -
HCH4g0366 789 Coils Coil 403 425 - -
HCH4g0366 789 SUPERFAMILY Protein kinase-like (PK-like) 453 729 IPR011009 -
HCH4g0366 789 SMART serkin_6 470 734 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
HCH4g0366 789 Pfam Universal stress protein family 12 136 IPR006016 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
HCH10g0198 HCH-Chr10:1618982 HCH4g0366 HCH-Chr4:2415927 1.30E-216 dispersed
HCH4g0366 HCH-Chr4:2415927 HCH7g0502 HCH-Chr7:3775906 4.00E-212 dispersed
HCH12g0288 HCH-Chr12:1615446 HCH4g0366 HCH-Chr4:2415927 4.80E-258 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
81445 PF00069 Pkinase 1.40E-37 CL0016 HCH PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
HCH4g0366 - - - 0.0