Gene search


Sequence information


Select Gene Cds Cds_length GC_content Pep Pep_length
HCH4g0377 ATGGGCGGCGATAGAGCGATCACTCTTGAAGAGATTAAAAACGAGGCCGTTGATTTGGAACATATTCCAATAGAGGAAGTGTTTGAACAGTTAAAATGTACCCGAGAAGGTCTGACCTCAGAGGAAGGAGCCAATCGCCTTCAAGTTTTTGGACCCAACAAACTAGAAGAGAAGAAGGAAAGTAAAATTCTCAAGTTTTTGGGTTTTATGTGGAATCCCTTATCTTGGGTCATGGAAGCTGCTGCCTTAATGGCTATAGTCTTGGCAAATGGTGATGGGCGACCTCCAGACTGGCAAGACTTTGTGGGGATCATTGTTTTGCTTATTATCAACTCTACCATAAGTTTTATTGAAGAAAACAATGCTGGTAATGCGGCTGCAGCACTCATGGCTGGTCTTGCACCCAAGACTAAGGTTCTCAGAGATGGTCGATGGTGTGAGCAAGATGCGGCTATTCTTGTTCCGGGTGATATTATCAGCATTAAGCTTGGAGATATAATACCAGCAGATGCCCGTCTTCTGGAGGGCGATCCTTTAAAAATTGATCAATCTGCTTTAACTGGGGAATCACTTCCAGTCACCAAGAACCCTTCAGATGAAGTATTTTCAGGTTCTACATGTAAACAGGGTGAAATTGAAGCAGTTGTAATTGCCACTGGTGTGCACACGTTTTTCGGCAAAGCTGCTCACTTGGTGGATAGCACCAATCAAGTTGGGCATTTTCAGAAAGTTCTTACTGCTATTGGTAATTTCTGCATTTGCTCCATCGCTGTTGGAATACTAATAGAGATTGTAGTCATGTACCCGATACAACATCGCAAGTATAGAGATGGAATTGACAACTTGTTGGTTCTTTTGATCGGTGGAATTCCTATTGCAATGCCAACTGTTTTGTCTGTCACAATGGCTATTGGTTCTCATAGGCTTTCACAGCAGGGTGCTATTACTAAGAGGATGACAGCTATTGAAGAAATGGCAGGCATGGATGTTCTTTGCAGTGATAAGACAGGAACTCTAACCTTAAACAAGCTATCTGTTGACAGAAACTTGATCGAAGTGTTTATCAAGGGTGTTGAAAAAGAGTATGTCATGCTTCTTGCAGCAAGGGCTTCTAGAACAGAAAATCAGGATGCTATTGATGCTGCTATAGTAGGGATGCTTGCTGATCCTAAAGAGGCACGGGCTGGAGTTAGGGAGGTTCATTTCCTTCCATTCAATCCTGTAGACAAAAGAACTGCCCTAACCTATATTGACCATGATGGAAATTGGCATCGAGTAAGCAAAGGCGCTCCTGAACAGATCCTAAATCTTTGCAATTCCAGGGAAGATACTAGAAAAAGGGTTCATGCAGTAATTGATAAGTTTGCTGAACGTGGACTCCGGTCACTGGCTGTTGCAAGACAGGAAGTACCAGAGAAAACGAAAGATAGCCCGGGAGGACCATGGCAGTTCGTTGGTTTGTTGCCTCTATTTGATCCTCCTAGGCATGATAGTGCAGAAACCATAAGAAGAGCTCTGAACCTAGGTGTAAATGTCAAGATGATTACTGGGGATCAACTTGCTATTGCCAAGGAAACAGGTCGTAGACTTGGTATGGGAACGAATATGTACCCGTCTTCTTCATTGCTCGGTCAAGACAAGGATGAATCTATTGCTACACTTCCAGTGGATGAGTTGATTGAGAAGGCTGATGGATTTGCTGGAGTTTTTCCAGAGCACAAATATGAAATCGTGAAAAGGCTACAGGAAAGGAAACATATATGTGGAATGACAGGAGATGGTGTTAATGATGCTCCTGCTTTGAAGAAGGCGGACATTGGAATTGCCGTTGCCGATGCTACTGATGCTGCCAGAAGTGCTTCAGATATCGTCCTCACAGAACCAGGATTGAGTGTAATTATTAGTGCTGTGTTAACCAGCAGGGCTATTTTCCAGAGGATGAAGAATTATACAATCTACGCAGTTTCAATTACCATCCGAATAGTGTTTGGCTTCATGTTCATTGCTTTGATTTGGAGGTTTGATTTTGCACCCTTCATGGTTCTAATAATAGCCATTCTAAATGATGGAACAATTATGACAATTTCAAAGGATCGAGTAAAGCCATCTCCACTGCCTGATAGTTGGAAACTGAAGGAGATTTTTGGCACTGGCATTGTGCTTGGAGGATACTTGGCTCTAATGACAGTAATATTCTTTTGGGCTGCGAACGAAACCAACTTTTTCTCGCACAAATTTCATGTAAAATCCCTGAGGGAAAGTCCTGAAGAAATGATGGCAGCCTTATACCTGCAAGTCAGCATTATAAGTCAAGCCCTTATTTTTGTCACAAGGTCTCGTAGCTGGTCATACTTTGAACGTCCTGGTCTCCTCCTAGTCGGCGCTTTCATCATTGCTCAACTGGTAGCAACCTTGATATCAGTTTATGCAAATTGGGGTTTTGCAAGGATAAGGGGAATGGGATGGGGGTGGGCTGGTGTTATATGGCTTTATAGCTTGGTAACATATCTCCCTCTCGACTTGCTGAAATTTGGAATCCGGTATGCTCACAGTGGGAAGGCTTGGGACACTCTCTTGGAGAACAAGACTGCCTTCACTACCAAGAAAGACTATGGCAAAGAAGAGAGAGAAGCCCAGTGGGCTGCAGCTCAACGTACTCTACATGGTCTCCAACCACCTGAAAACTCCAATCTCTTCCCTGAGAAAACTAGTTATAGGGAGCTTTCTGAGATTGCAGAGCAAGCCAAGCGTCGAGCTGAGGTTGCCAGGCTTCGTGAATTGAATACGCTGAAGGGTCATGTTGAATCAGTGGTGAAGCTGAAAGGACTGGATATTGATACGATTCAACAACATTATACAGTTTAA 2865 43.32 MGGDRAITLEEIKNEAVDLEHIPIEEVFEQLKCTREGLTSEEGANRLQVFGPNKLEEKKESKILKFLGFMWNPLSWVMEAAALMAIVLANGDGRPPDWQDFVGIIVLLIINSTISFIEENNAGNAAAALMAGLAPKTKVLRDGRWCEQDAAILVPGDIISIKLGDIIPADARLLEGDPLKIDQSALTGESLPVTKNPSDEVFSGSTCKQGEIEAVVIATGVHTFFGKAAHLVDSTNQVGHFQKVLTAIGNFCICSIAVGILIEIVVMYPIQHRKYRDGIDNLLVLLIGGIPIAMPTVLSVTMAIGSHRLSQQGAITKRMTAIEEMAGMDVLCSDKTGTLTLNKLSVDRNLIEVFIKGVEKEYVMLLAARASRTENQDAIDAAIVGMLADPKEARAGVREVHFLPFNPVDKRTALTYIDHDGNWHRVSKGAPEQILNLCNSREDTRKRVHAVIDKFAERGLRSLAVARQEVPEKTKDSPGGPWQFVGLLPLFDPPRHDSAETIRRALNLGVNVKMITGDQLAIAKETGRRLGMGTNMYPSSSLLGQDKDESIATLPVDELIEKADGFAGVFPEHKYEIVKRLQERKHICGMTGDGVNDAPALKKADIGIAVADATDAARSASDIVLTEPGLSVIISAVLTSRAIFQRMKNYTIYAVSITIRIVFGFMFIALIWRFDFAPFMVLIIAILNDGTIMTISKDRVKPSPLPDSWKLKEIFGTGIVLGGYLALMTVIFFWAANETNFFSHKFHVKSLRESPEEMMAALYLQVSIISQALIFVTRSRSWSYFERPGLLLVGAFIIAQLVATLISVYANWGFARIRGMGWGWAGVIWLYSLVTYLPLDLLKFGIRYAHSGKAWDTLLENKTAFTTKKDYGKEEREAQWAAAQRTLHGLQPPENSNLFPEKTSYRELSEIAEQAKRRAEVARLRELNTLKGHVESVVKLKGLDIDTIQQHYTV 954
       

Gff information


Chromosome Start End Strand Old_gene Gene Num
4 2468768 2474964 - evm.model.ptg000015l.377 HCH4g0377 542621
       

Annotation information


Select Seq ID Length Analysis Description Start End IPR GO
HCH4g0377 954 Pfam haloacid dehalogenase-like hydrolase 328 605 - -
HCH4g0377 954 Coils Coil 905 925 - -
HCH4g0377 954 CDD P-type_ATPase_H 37 844 IPR006534 GO:0008553(InterPro)|GO:0016020(InterPro)|GO:0120029(InterPro)
HCH4g0377 954 SMART Cation_ATPase_N_a_2 18 90 IPR004014 -
HCH4g0377 954 SFLD Haloacid Dehalogenase 314 642 - -
HCH4g0377 954 PRINTS H+-transporting ATPase (proton pump) signature 591 607 IPR001757 GO:0005215(InterPro)|GO:0005524(InterPro)|GO:0016020(InterPro)|GO:0016887(InterPro)
HCH4g0377 954 PRINTS H+-transporting ATPase (proton pump) signature 563 579 IPR001757 GO:0005215(InterPro)|GO:0005524(InterPro)|GO:0016020(InterPro)|GO:0016887(InterPro)
HCH4g0377 954 PRINTS H+-transporting ATPase (proton pump) signature 622 647 IPR001757 GO:0005215(InterPro)|GO:0005524(InterPro)|GO:0016020(InterPro)|GO:0016887(InterPro)
HCH4g0377 954 PRINTS H+-transporting ATPase (proton pump) signature 763 784 IPR001757 GO:0005215(InterPro)|GO:0005524(InterPro)|GO:0016020(InterPro)|GO:0016887(InterPro)
HCH4g0377 954 PRINTS H+-transporting ATPase (proton pump) signature 448 466 IPR001757 GO:0005215(InterPro)|GO:0005524(InterPro)|GO:0016020(InterPro)|GO:0016887(InterPro)
HCH4g0377 954 SUPERFAMILY Calcium ATPase, transmembrane domain M 18 850 IPR023298 -
HCH4g0377 954 PRINTS P-type cation-transporting ATPase superfamily signature 486 497 - -
HCH4g0377 954 PRINTS P-type cation-transporting ATPase superfamily signature 614 626 - -
HCH4g0377 954 PRINTS P-type cation-transporting ATPase superfamily signature 591 610 - -
HCH4g0377 954 PRINTS P-type cation-transporting ATPase superfamily signature 508 518 - -
HCH4g0377 954 PRINTS P-type cation-transporting ATPase superfamily signature 182 196 - -
HCH4g0377 954 PRINTS P-type cation-transporting ATPase superfamily signature 332 346 - -
HCH4g0377 954 FunFam ATPase 4 plasma membrane-type 576 818 - -
HCH4g0377 954 ProSitePatterns E1-E2 ATPases phosphorylation site. 334 340 IPR018303 -
HCH4g0377 954 FunFam Plasma membrane ATPase 484 639 - -
HCH4g0377 954 Pfam Cation transporter/ATPase, N-terminus 21 84 IPR004014 -
HCH4g0377 954 FunFam Plasma membrane ATPase 344 491 - -
HCH4g0377 954 NCBIfam HAD-IC family P-type ATPase 104 348 IPR001757 GO:0005215(InterPro)|GO:0005524(InterPro)|GO:0016020(InterPro)|GO:0016887(InterPro)
HCH4g0377 954 NCBIfam HAD-IC family P-type ATPase 566 681 IPR001757 GO:0005215(InterPro)|GO:0005524(InterPro)|GO:0016020(InterPro)|GO:0016887(InterPro)
HCH4g0377 954 SFLD p-type atpase 314 642 IPR044492 -
HCH4g0377 954 PANTHER CALCIUM-TRANSPORTING ATPASE 20 878 - GO:0005886(PANTHER)|GO:0008553(PANTHER)|GO:0015662(PANTHER)|GO:0016021(PANTHER)|GO:0034220(PANTHER)|GO:0051453(PANTHER)|GO:1902600(PANTHER)
HCH4g0377 954 Gene3D - 329 628 IPR023214 -
HCH4g0377 954 Gene3D - 97 818 - -
HCH4g0377 954 SUPERFAMILY HAD-like 328 638 IPR036412 -
HCH4g0377 954 NCBIfam plasma-membrane proton-efflux P-type ATPase 37 809 IPR006534 GO:0008553(InterPro)|GO:0016020(InterPro)|GO:0120029(InterPro)
HCH4g0377 954 SUPERFAMILY Calcium ATPase, transduction domain A 135 232 IPR008250 -
HCH4g0377 954 Pfam E1-E2 ATPase 134 311 - -
HCH4g0377 954 Gene3D - 135 219 - -
HCH4g0377 954 Gene3D - 344 491 IPR023299 GO:0000166(InterPro)
HCH4g0377 954 Gene3D - 903 954 - -
HCH4g0377 954 FunFam Plasma membrane ATPase 135 219 - -
       

Duplication type information


Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
HCH10g0243 HCH-Chr10:2018377 HCH4g0377 HCH-Chr4:2468768 0.00E+00 dispersed
HCH13g0763 HCH-Chr13:6838516 HCH4g0377 HCH-Chr4:2468768 0.00E+00 dispersed
HCH3g0287 HCH-Chr3:1812395 HCH4g0377 HCH-Chr4:2468768 0.00E+00 dispersed
HCH4g0377 HCH-Chr4:2468768 HCH8g1043 HCH-Chr8:46378910 0.00E+00 dispersed
HCH12g0305 HCH-Chr12:1737519 HCH4g0377 HCH-Chr4:2468768 0.00E+00 wgd
       

Pathway information


Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
HCH4g0377 K01535 - csv:101213505 1753.8