Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
HCH4g0394 ATGGCTGTCAAAACAGCACAATCATTTAGAGATCGGACACATGAATTTCAGAATGTCGTAGAGAGGCTAAAGAAGTCTTTCTCATCTGGTACGGGGGCGGCTGGACCAAGTGGTGGTTCAAAATCGGAAGAACAGCGTTCTGCGGTGGCACTTCAGTCTGAATTTAATAGGAGGGCTTCCAAGATTGGGTTGGGGATACACCAGACGTCTCAGAAGCTCTCAAAGTTGGCTAAGCTGGCAAAGAGGACTTCAGTTTTTGATGACCCAACAATGGAAATTCAGGAGTTAACTTCACTTATTAAGCAGGACATTACAACATTGAACTCTGCAGTTGTAGATCTTCAGCTCCTCAGCAACTCTAGAAATGAAAGTGGGAATTTATCCAGTGATACTACTAGTCATTCAACCACTGTGGTAGATGACCTTAAGAATCGATTGATGAGCACCACAAAAGAATTTAAAGAAGTCCTAACCATGCGAACAGAAAATTTAAAGGTTCACGAGAACAGAAGACAATTGTTTTCTTCTACTGCTTCAAAGGAATCTACAAATCCTTTTGTCCGACAGCGTCCATTGGCTTCTAGGTCAGCTGCTAGTGCCTCAAGCGCACCCCCTCCTCCATGGGCTCAGGGGTCAACATCTTTATCCAAAACATCTCCCAGAAAGTTGGATGGGGAGAGTCAGCCACTGCTACAGCAGCAGCAGCAACAACAACAACAGCAGATGGTTCCGTTGCAAGATACTTACATGCAGAGCAGGGCTGAAGCTCTTCAAAATGTAGAATCTACTATTCATGAATTGAGCAATATCTTCAATCAGCTTGCAACACTGGTTTCTGAACAAGGGGAGATTGCTATCAGGATCGATGAGAACATGGACGATAGTTTGGCAAACGTGGAGGGGGCACAGGGTGCTTTGCTCAAGTATCTAAACAGTATATCATCAAATAGGTGGTTGATGATCAAAATTTTCTTTGTATTAATATTTTTCCTTATGGTTTTCCTATTTTTTGTGGCATAG 1020 42.94 MAVKTAQSFRDRTHEFQNVVERLKKSFSSGTGAAGPSGGSKSEEQRSAVALQSEFNRRASKIGLGIHQTSQKLSKLAKLAKRTSVFDDPTMEIQELTSLIKQDITTLNSAVVDLQLLSNSRNESGNLSSDTTSHSTTVVDDLKNRLMSTTKEFKEVLTMRTENLKVHENRRQLFSSTASKESTNPFVRQRPLASRSAASASSAPPPPWAQGSTSLSKTSPRKLDGESQPLLQQQQQQQQQQMVPLQDTYMQSRAEALQNVESTIHELSNIFNQLATLVSEQGEIAIRIDENMDDSLANVEGAQGALLKYLNSISSNRWLMIKIFFVLIFFLMVFLFFVA 339
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 2578181 2581071 + evm.model.ptg000015l.394 HCH4g0394 542638
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
HCH4g0394 339 ProSitePatterns Syntaxin / epimorphin family signature. 253 292 IPR006012 GO:0005484(InterPro)|GO:0006886(InterPro)|GO:0016020(InterPro)
HCH4g0394 339 ProSiteProfiles t-SNARE coiled-coil homology domain profile. 247 309 IPR000727 -
HCH4g0394 339 MobiDBLite consensus disorder prediction 170 244 - -
HCH4g0394 339 Pfam Syntaxin-5 N-terminal, Sly1p-binding domain 6 25 IPR021538 -
HCH4g0394 339 SUPERFAMILY t-snare proteins 52 302 IPR010989 GO:0016020(InterPro)|GO:0016192(InterPro)
HCH4g0394 339 Gene3D - 50 302 - -
HCH4g0394 339 PANTHER SYNTAXIN 55 328 IPR045242 GO:0000139(PANTHER)|GO:0000149(PANTHER)|GO:0005484(PANTHER)|GO:0006886(PANTHER)|GO:0006888(PANTHER)|GO:0006906(PANTHER)|GO:0012505(PANTHER)|GO:0016021(PANTHER)|GO:0031201(PANTHER)|GO:0048278(PANTHER)
HCH4g0394 339 MobiDBLite consensus disorder prediction 25 47 - -
HCH4g0394 339 MobiDBLite consensus disorder prediction 168 244 - -
HCH4g0394 339 CDD SNARE_syntaxin5 250 328 - -
HCH4g0394 339 SMART tSNARE_6 242 309 IPR000727 -
HCH4g0394 339 Pfam SNARE domain 283 335 IPR000727 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
HCH1g0387 HCH-Chr1:51739662 HCH4g0394 HCH-Chr4:2578181 1.50E-75 dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
HCH4g0394 K08490 - csv:101203633 494.967