Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
HCH4g0398 ATGGACGTTCCCTCAGTGGAACTAAATAGTGAGAGTGAAGAAGATTCATACCCTTTATTAATGGCTCGGTCAGGAAATTTGAACAGCAGTGAGCATATCATTGACATAACTGGTAGTGGTGATCCTTCCCCCTCCAGCTCATCCCATGCCAGGAATTCAAATGGCTTAAATTCATCACAGCATGAAGACAGAGCTTCAAGTAGTGCACGAGTTGCTTTATCTCAACCTTCAATTTCTTCTACTGGATCGAATTCCAGGAATTCCTCATTCATAAGGAGAGGGGATGCACGACGTCGCAGGAGTCCTTTAAATTCTGGTCTATGGATATCTATTGAATTACTACTCACTATGAGCCAAATTATTGCAGCTATTATTGTTTTGTCATTGTCAAGGAATGAAAAACCCCGCGCACCTTTGTTTGCTTGGATTGTGGGATATGCATCTGGATGTGTTGCCACCCTTCCTCTTCTCTATTGGCGCTATCGACATCGTAATCAAGCTTCAGAACAAGATTCTGTTCAAGCCAGTCAGAATTCTTCGCGCATTAATGTACCTGCTGGTCCATTTTCTCTATCAGTTTCTAGGGCATCGGAAGGAGAAGAACCTCAGCATCTTGCCCCATCTCCTAGGGGCAGTCAAGTGTCAGGAGTACTGAATGCAAGATTTAAAGTATTGGTTGAATATTTTAAGATGGGCTTGGATTGCTTCTTTGCTGTTTGGTTTGTGGTTGGTAATGTTTGGATCTTTGGAGGGCATTCATCAGCTTCTGAAGCTCCTAACTTGTACAGGCTATGTATAGTGTTTCTCACGTTTAGCTGTATTGGATATGCTATGCCCTTCATTCTATGTGTAACTATTTGCTGTTGTCTACCTTGTATAATTTCCATCCTTGGGTTTAGAGAGGATTTGACTCAGACACGAGGAGCTACAACAGAATCAATTGATGCGCTGCCAACTTATAAGTTTAAGCTGAAGAAAAGTAGAAGTGGAGATGATAGAGAAAACAGCTCAGGGGCTGGTGAAGGTGGGGTTGTGGCTGCTGGAACTGACAAGGAACGAGTGATTTCGGGAGAAGATGCTGTTTGTTGCATCTGCTTGGCAAAATACGCTAACAATGAGGAACTGAGAGAGTTACCATGTTCTCATTTTTTCCACAAGGATTGTGTGGATAAATGGTTGAAGATCAATGCTCTATGCCCCCTATGTAAAAGTGAAGTTGGTGAGAGTGCCATCGGCTCTCGTCATGAGACAAATCATAGCCAACGACAGGAAGAGTAA 1278 42.8 MDVPSVELNSESEEDSYPLLMARSGNLNSSEHIIDITGSGDPSPSSSSHARNSNGLNSSQHEDRASSSARVALSQPSISSTGSNSRNSSFIRRGDARRRRSPLNSGLWISIELLLTMSQIIAAIIVLSLSRNEKPRAPLFAWIVGYASGCVATLPLLYWRYRHRNQASEQDSVQASQNSSRINVPAGPFSLSVSRASEGEEPQHLAPSPRGSQVSGVLNARFKVLVEYFKMGLDCFFAVWFVVGNVWIFGGHSSASEAPNLYRLCIVFLTFSCIGYAMPFILCVTICCCLPCIISILGFREDLTQTRGATTESIDALPTYKFKLKKSRSGDDRENSSGAGEGGVVAAGTDKERVISGEDAVCCICLAKYANNEELRELPCSHFFHKDCVDKWLKINALCPLCKSEVGESAIGSRHETNHSQRQEE 425
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 2590064 2592365 - evm.model.ptg000015l.398 HCH4g0398 542642
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
HCH4g0398 425 ProSiteProfiles Zinc finger RING-type profile. 362 403 IPR001841 -
HCH4g0398 425 MobiDBLite consensus disorder prediction 1 96 - -
HCH4g0398 425 Pfam Ring finger domain 362 403 IPR001841 -
HCH4g0398 425 SUPERFAMILY RING/U-box 354 408 - -
HCH4g0398 425 FunFam E3 ubiquitin-protein ligase 345 411 - -
HCH4g0398 425 SMART ring_2 362 402 IPR001841 -
HCH4g0398 425 MobiDBLite consensus disorder prediction 22 90 - -
HCH4g0398 425 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 345 411 IPR013083 -
HCH4g0398 425 SMART ringv_2 361 403 IPR011016 GO:0008270(InterPro)
HCH4g0398 425 PANTHER C3H4 TYPE ZINC FINGER PROTEIN 21 407 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
HCH12g1317 HCH-Chr12:26209122 HCH4g0398 HCH-Chr4:2590064 7.20E-46 dispersed
HCH12g1319 HCH-Chr12:26265777 HCH4g0398 HCH-Chr4:2590064 1.20E-48 dispersed
HCH4g0398 HCH-Chr4:2590064 HCH7g1596 HCH-Chr7:48256709 4.00E-41 dispersed
HCH4g0398 HCH-Chr4:2590064 HCH6g1267 HCH-Chr6:46976968 1.90E-11 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
HCH4g0398 - - - 0.0