Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
HCH4g0400 ATGATGAAAGAAAATAAGATTGCTGTAAGAATCACACGTTCCTTGGCTAAAGCCTCTGGTGTACCAGATGGTGTTTCCCCCTCATTGCAACTTTCACTCGAAGGACGTCGAAAACACGATCACGGATCGAATTCCAAACGCGCACAATCAGATGAGAATAATGCTTCTGGCACTGACACCTTTGGCCTTCAACATAAAAGAAGAGCAGTGCTCAAGGATGTGACTAACATCTCCTATAAGAGCAATTACCAGGCCTATCTGAAAGAACAAAAGGCAGGCTTAAATTATTTGTCTGGAAATGCACAGGGGAAAGAGGTTGCAAAGACAGAATCAGATGAAGATTTGTCTGTAGTAAGGATGGCAGAAACACAAGGTGTCTCTCTAATGATAAAGTCAGACAGAGAAGAGACAGAACAGAAAAACAAGTTTCATAGTTTCATACATCACCCCATGCCTTCAGAATCAGGACATCAGATAAAAGGTTTGGATCATAAAAAACTAATTAATGTTATTCATCTCACCATTTTGGATGCAGATTCAAACTCAGAAGATCCTCAATCATGCACCTTATATGCTCATGATATATACGATATTACTCGTGTAACCGAGCTTGATCAAAGGCCCTCTACTAATTATATGGAAGAGATGCAGAAACATATCAATCCAATCATGAGAGGCATTCTAATTGATTGGCTAGTGGAGGTTTCTGAAGAATACAAGCTGGTTTCTGACACACTTTACCTCACTGTGAATCTTCTTGATCGGTTTCTCTCTCAAAGTTACATTGAAAGGCAAAGATTGCAACTCCTCGGTGTTACTTGCATGTTAATCGCCTCTAAATATGAAGAACTCTGTGCACCATGTGCAGAAGACTTCTGCTTCATCACGGACAACAGCTACACGAGAGGAGAGGTACTAAAAATGGAGGGTGAAGTTTTGAGCTTGCTTAACTTTCAGCTATCTGTTCCCACTGCAAAAACATTTCTCAGGAGATTTGTTCAGGTAGCACAAGCTTCTTCTAAGGATCCTTGTATAGAATTTGAGCATTTGACAGATTATCTAGCCGAGTTAACTCTAGTTGAGTATAGCTTCTTAACGTTTCTGCCTTCAGCAGTAGCTGCATCCGTGGTGTTCTTAGCAAGATGGATTCTAAACCAACCAAATCATCCATGGAATCCAACTCTAGAGCAATATACTAACTACAGTGCCTCTGAGCTAAGAACTCCAGTACTTGCCTTAGAAGATTTGCAATTGAATGCTAATGGTTGCTCCTTAAATGCCATATTCCAGAAGTACAAGCAACTGAAGTTTCATTGTGTGGCCACTTTAACCTCCGCAAAATCCGTCCTATCAGTATTCCAAAGATCAGGCTGA 1374 40.47 MMKENKIAVRITRSLAKASGVPDGVSPSLQLSLEGRRKHDHGSNSKRAQSDENNASGTDTFGLQHKRRAVLKDVTNISYKSNYQAYLKEQKAGLNYLSGNAQGKEVAKTESDEDLSVVRMAETQGVSLMIKSDREETEQKNKFHSFIHHPMPSESGHQIKGLDHKKLINVIHLTILDADSNSEDPQSCTLYAHDIYDITRVTELDQRPSTNYMEEMQKHINPIMRGILIDWLVEVSEEYKLVSDTLYLTVNLLDRFLSQSYIERQRLQLLGVTCMLIASKYEELCAPCAEDFCFITDNSYTRGEVLKMEGEVLSLLNFQLSVPTAKTFLRRFVQVAQASSKDPCIEFEHLTDYLAELTLVEYSFLTFLPSAVAASVVFLARWILNQPNHPWNPTLEQYTNYSASELRTPVLALEDLQLNANGCSLNAIFQKYKQLKFHCVATLTSAKSVLSVFQRSG 457
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 2601293 2604052 - evm.model.ptg000015l.400 HCH4g0400 542644
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
HCH4g0400 457 SUPERFAMILY Cyclin-like 183 320 IPR036915 -
HCH4g0400 457 FunFam Mitotic cyclin 6 208 308 - -
HCH4g0400 457 Gene3D - 208 321 - -
HCH4g0400 457 Pfam Cyclin, C-terminal domain 323 445 IPR004367 -
HCH4g0400 457 MobiDBLite consensus disorder prediction 18 60 - -
HCH4g0400 457 FunFam Cyclin A1 311 442 - -
HCH4g0400 457 CDD CYCLIN_AtCycA-like_rpt2 323 437 - -
HCH4g0400 457 ProSitePatterns Cyclins signature. 225 256 IPR048258 -
HCH4g0400 457 MobiDBLite consensus disorder prediction 33 47 - -
HCH4g0400 457 PANTHER CYCLINS 177 434 IPR039361 GO:0000079(PANTHER)|GO:0000307(PANTHER)|GO:0005634(PANTHER)|GO:0005737(PANTHER)|GO:0016538(PANTHER)|GO:0044772(PANTHER)
HCH4g0400 457 SMART cyclin_7 230 314 IPR013763 -
HCH4g0400 457 SMART cyclin_7 327 415 IPR013763 -
HCH4g0400 457 Pfam Cyclin, N-terminal domain 194 321 IPR006671 -
HCH4g0400 457 Gene3D - 194 442 - -
HCH4g0400 457 SUPERFAMILY Cyclin-like 322 447 IPR036915 -
HCH4g0400 457 PIRSF Cyclin_A_B_D_E 16 456 IPR046965 GO:0016538(InterPro)|GO:0044772(InterPro)
HCH4g0400 457 SMART Cyclin_C_2 323 446 IPR004367 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
HCH13g0150 HCH-Chr13:958674 HCH4g0400 HCH-Chr4:2601293 3.60E-78 dispersed
HCH4g0400 HCH-Chr4:2601293 HCH4g0610 HCH-Chr4:4008048 3.60E-72 dispersed
HCH12g0338 HCH-Chr12:1958231 HCH4g0400 HCH-Chr4:2601293 3.90E-117 wgd
HCH4g0400 HCH-Chr4:2601293 HCH4g1352 HCH-Chr4:9549372 1.40E-108 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
HCH4g0400 K06627 - csv:101211578 561.607