Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
HCH4g0400 | ATGATGAAAGAAAATAAGATTGCTGTAAGAATCACACGTTCCTTGGCTAAAGCCTCTGGTGTACCAGATGGTGTTTCCCCCTCATTGCAACTTTCACTCGAAGGACGTCGAAAACACGATCACGGATCGAATTCCAAACGCGCACAATCAGATGAGAATAATGCTTCTGGCACTGACACCTTTGGCCTTCAACATAAAAGAAGAGCAGTGCTCAAGGATGTGACTAACATCTCCTATAAGAGCAATTACCAGGCCTATCTGAAAGAACAAAAGGCAGGCTTAAATTATTTGTCTGGAAATGCACAGGGGAAAGAGGTTGCAAAGACAGAATCAGATGAAGATTTGTCTGTAGTAAGGATGGCAGAAACACAAGGTGTCTCTCTAATGATAAAGTCAGACAGAGAAGAGACAGAACAGAAAAACAAGTTTCATAGTTTCATACATCACCCCATGCCTTCAGAATCAGGACATCAGATAAAAGGTTTGGATCATAAAAAACTAATTAATGTTATTCATCTCACCATTTTGGATGCAGATTCAAACTCAGAAGATCCTCAATCATGCACCTTATATGCTCATGATATATACGATATTACTCGTGTAACCGAGCTTGATCAAAGGCCCTCTACTAATTATATGGAAGAGATGCAGAAACATATCAATCCAATCATGAGAGGCATTCTAATTGATTGGCTAGTGGAGGTTTCTGAAGAATACAAGCTGGTTTCTGACACACTTTACCTCACTGTGAATCTTCTTGATCGGTTTCTCTCTCAAAGTTACATTGAAAGGCAAAGATTGCAACTCCTCGGTGTTACTTGCATGTTAATCGCCTCTAAATATGAAGAACTCTGTGCACCATGTGCAGAAGACTTCTGCTTCATCACGGACAACAGCTACACGAGAGGAGAGGTACTAAAAATGGAGGGTGAAGTTTTGAGCTTGCTTAACTTTCAGCTATCTGTTCCCACTGCAAAAACATTTCTCAGGAGATTTGTTCAGGTAGCACAAGCTTCTTCTAAGGATCCTTGTATAGAATTTGAGCATTTGACAGATTATCTAGCCGAGTTAACTCTAGTTGAGTATAGCTTCTTAACGTTTCTGCCTTCAGCAGTAGCTGCATCCGTGGTGTTCTTAGCAAGATGGATTCTAAACCAACCAAATCATCCATGGAATCCAACTCTAGAGCAATATACTAACTACAGTGCCTCTGAGCTAAGAACTCCAGTACTTGCCTTAGAAGATTTGCAATTGAATGCTAATGGTTGCTCCTTAAATGCCATATTCCAGAAGTACAAGCAACTGAAGTTTCATTGTGTGGCCACTTTAACCTCCGCAAAATCCGTCCTATCAGTATTCCAAAGATCAGGCTGA | 1374 | 40.47 | MMKENKIAVRITRSLAKASGVPDGVSPSLQLSLEGRRKHDHGSNSKRAQSDENNASGTDTFGLQHKRRAVLKDVTNISYKSNYQAYLKEQKAGLNYLSGNAQGKEVAKTESDEDLSVVRMAETQGVSLMIKSDREETEQKNKFHSFIHHPMPSESGHQIKGLDHKKLINVIHLTILDADSNSEDPQSCTLYAHDIYDITRVTELDQRPSTNYMEEMQKHINPIMRGILIDWLVEVSEEYKLVSDTLYLTVNLLDRFLSQSYIERQRLQLLGVTCMLIASKYEELCAPCAEDFCFITDNSYTRGEVLKMEGEVLSLLNFQLSVPTAKTFLRRFVQVAQASSKDPCIEFEHLTDYLAELTLVEYSFLTFLPSAVAASVVFLARWILNQPNHPWNPTLEQYTNYSASELRTPVLALEDLQLNANGCSLNAIFQKYKQLKFHCVATLTSAKSVLSVFQRSG | 457 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
4 | 2601293 | 2604052 | - | evm.model.ptg000015l.400 | HCH4g0400 | 542644 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
HCH4g0400 | 457 | SUPERFAMILY | Cyclin-like | 183 | 320 | IPR036915 | - | |
HCH4g0400 | 457 | FunFam | Mitotic cyclin 6 | 208 | 308 | - | - | |
HCH4g0400 | 457 | Gene3D | - | 208 | 321 | - | - | |
HCH4g0400 | 457 | Pfam | Cyclin, C-terminal domain | 323 | 445 | IPR004367 | - | |
HCH4g0400 | 457 | MobiDBLite | consensus disorder prediction | 18 | 60 | - | - | |
HCH4g0400 | 457 | FunFam | Cyclin A1 | 311 | 442 | - | - | |
HCH4g0400 | 457 | CDD | CYCLIN_AtCycA-like_rpt2 | 323 | 437 | - | - | |
HCH4g0400 | 457 | ProSitePatterns | Cyclins signature. | 225 | 256 | IPR048258 | - | |
HCH4g0400 | 457 | MobiDBLite | consensus disorder prediction | 33 | 47 | - | - | |
HCH4g0400 | 457 | PANTHER | CYCLINS | 177 | 434 | IPR039361 | GO:0000079(PANTHER)|GO:0000307(PANTHER)|GO:0005634(PANTHER)|GO:0005737(PANTHER)|GO:0016538(PANTHER)|GO:0044772(PANTHER) | |
HCH4g0400 | 457 | SMART | cyclin_7 | 230 | 314 | IPR013763 | - | |
HCH4g0400 | 457 | SMART | cyclin_7 | 327 | 415 | IPR013763 | - | |
HCH4g0400 | 457 | Pfam | Cyclin, N-terminal domain | 194 | 321 | IPR006671 | - | |
HCH4g0400 | 457 | Gene3D | - | 194 | 442 | - | - | |
HCH4g0400 | 457 | SUPERFAMILY | Cyclin-like | 322 | 447 | IPR036915 | - | |
HCH4g0400 | 457 | PIRSF | Cyclin_A_B_D_E | 16 | 456 | IPR046965 | GO:0016538(InterPro)|GO:0044772(InterPro) | |
HCH4g0400 | 457 | SMART | Cyclin_C_2 | 323 | 446 | IPR004367 | - |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
HCH13g0150 | HCH-Chr13:958674 | HCH4g0400 | HCH-Chr4:2601293 | 3.60E-78 | dispersed | |
HCH4g0400 | HCH-Chr4:2601293 | HCH4g0610 | HCH-Chr4:4008048 | 3.60E-72 | dispersed | |
HCH12g0338 | HCH-Chr12:1958231 | HCH4g0400 | HCH-Chr4:2601293 | 3.90E-117 | wgd | |
HCH4g0400 | HCH-Chr4:2601293 | HCH4g1352 | HCH-Chr4:9549372 | 1.40E-108 | wgd |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
HCH4g0400 | K06627 | - | csv:101211578 | 561.607 |