Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
HCH4g0410 ATGTCGAGCGCCATCGTTTTGGGATATTCAAGCTCCTGGTCTCGCGCTCTCGTCAATATCTCTCCGTACACTTTCTCCGCCATTGGCATCGCCATCTCCATCGGTGTTTCCGTCCTCGGCGCCGCCTGGGGGATTTATATTACAGGAAGCAGTTTGATCGGTGCTGCAATCAAAGCTCCTCGTATTACTTCTAAGAATTTGATTAGTGTAATTTTCTGTGAAGCTGTTGCTATATATGGTGTCATTGTTGCCATTATCTTACAGACAAGGTTAGAGAGTGTTGGATCATCTCAGATATATGCCCCTGAGTCTTTGAGAGCAGGATATGCAATTTTTGCATCTGGAATTATTGTTGGCTTTGCAAACCTTGTCTGCGGGTTGTGTGTGGGAATCATTGGAAGCAGCTGCGCATTATCTGATGCCCAAAACTCCTCTCTTTTTGTGAAAATTCTTGTCATCGAGATCTTTGGCAGTGCACTTGGGTTGTTCGGAGTGATTGTTGGAATAATTATGTCAGCTCAAGCTTCTTGGCCTGCTAGGTCAGGTTGA 549 45.17 MSSAIVLGYSSSWSRALVNISPYTFSAIGIAISIGVSVLGAAWGIYITGSSLIGAAIKAPRITSKNLISVIFCEAVAIYGVIVAIILQTRLESVGSSQIYAPESLRAGYAIFASGIIVGFANLVCGLCVGIIGSSCALSDAQNSSLFVKILVIEIFGSALGLFGVIVGIIMSAQASWPARSG 182
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 2684505 2686057 + evm.model.ptg000015l.410 HCH4g0410 542654
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
HCH4g0410 182 CDD ATP-synt_Vo_c_ATP6F_rpt2 107 171 - -
HCH4g0410 182 PANTHER V-TYPE PROTON ATPASE PROTEOLIPID SUBUNIT 10 175 - GO:0016021(PANTHER)
HCH4g0410 182 SUPERFAMILY F1F0 ATP synthase subunit C 21 89 IPR035921 -
HCH4g0410 182 Pfam ATP synthase subunit C 28 87 IPR002379 GO:0015078(InterPro)|GO:0033177(InterPro)|GO:1902600(InterPro)
HCH4g0410 182 Pfam ATP synthase subunit C 112 171 IPR002379 GO:0015078(InterPro)|GO:0033177(InterPro)|GO:1902600(InterPro)
HCH4g0410 182 PRINTS Vacuolar ATP synthase 16kDa subunit signature 123 149 IPR000245 GO:0033179(InterPro)|GO:0046961(InterPro)|GO:1902600(InterPro)
HCH4g0410 182 PRINTS Vacuolar ATP synthase 16kDa subunit signature 67 91 IPR000245 GO:0033179(InterPro)|GO:0046961(InterPro)|GO:1902600(InterPro)
HCH4g0410 182 PRINTS Vacuolar ATP synthase 16kDa subunit signature 41 65 IPR000245 GO:0033179(InterPro)|GO:0046961(InterPro)|GO:1902600(InterPro)
HCH4g0410 182 PRINTS Vacuolar ATP synthase 16kDa subunit signature 150 173 IPR000245 GO:0033179(InterPro)|GO:0046961(InterPro)|GO:1902600(InterPro)
HCH4g0410 182 SUPERFAMILY F1F0 ATP synthase subunit C 104 172 IPR035921 -
HCH4g0410 182 CDD ATP-synt_Vo_c_ATP6F_rpt1 25 87 - -
HCH4g0410 182 Gene3D - 23 177 IPR035921 -
HCH4g0410 182 FunFam V-type proton ATPase proteolipid subunit 23 178 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
HCH12g0344 HCH-Chr12:1977071 HCH4g0410 HCH-Chr4:2684505 7.30E-46 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
HCH4g0410 K03661 - csv:101221052 308.916