Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
HCH4g0415 ATGAGCAATTTACCAGTCGGAGTTCCTCTCCCATCAAACCTCGTTGTTGATGCGGCGGACCCCGACTGGATGAGCAAAGGCGATAACGCCTGGCAGCTAACGGCGGCGACATTGGTCGGATTACAAAGTGTCCCCGGACTCATAATCCTATACGGCGGTGCGGTTAAGAAGAAATGGGCTATAAACTCAGCGTTCATGGCACTGTATGCTTTTGCGTCCGTTCTGGTTTGTTGGGTTTGCTGGGGGTATAGACTTTCGTTTGGAGATAAGCTTCTTCCGTTCTGGGGAAAACCAAATGTGGCTTTGGATGAAAAGTTTTTGCTCGACCAAGCATTCGCCGGGAAGTTTCCGTCGGCGACGATGGTGTTTTTTCAGTTTGTTTTCGCGGCGATTACTCTTGTTTTGATTGCTGGAGCTTTGCTTGGGAGGATGAATTTTTACGCGTGGATGTTGTTTGTGCCATTATGGCTCACTTTTTCATACACTTTTGTGGCGTTTAGTATTTGGAGTCCAAATGGGTTTTTTGCTAAGGTTGGATTGATTGATTATTCAGGTGGTTATGTCATTCATTTGTCTTCTGGAGTTGCTGGTTTTACCGCAGCTTATTGGGTGGGTCCACGTCTATCGAAGGACAGGGAAAGCTTCCCTCCTAATAACATCCTTCTGATGCTCGCCGGAGCTGGTTTGCTTTGGATGGGATGGACGGGCTTCAATGGCGGAGACCCTTACGCCGCCAACGTCGACGCCTCACTCGCCGTCTTGAATACTCACGTTTGCACCGCCACAAGCTTACTCACTTGGCTCATTTTTGATATTGTCTTCTTCCGCAAACCTTCCGTCATTGGAGCCGTCCAAGGCATGATCACCGGTTTAGTCTGCATCACTCCTGCTGCCGGAATCGTGCAAGGATGGGCAGCCATTATCATGGGAATCTTATCAGGCTCAATCCCTTGGTTCACCATGATGGTCGTCCACAAGAGATCCCCTCTCCTTCAAAAAGTCGACGATACGATGGCCGTCCTTCACACGCACGCCATCGCCGGCAGCCTTGGCGGAATTCTCAGCGGCATCTTCGCTGAGCCGAAGCTAAACAACTTGTTCTACGGTGGATACAAACAGTACGTCGGCCTATTGTACGGATTCAACACTGGCCAAGCCGGATTAGGGTTACGGCAGCTCGGAATTCAGCTACTAGGGATTCTGTTTGTGACCATCATAAATGTGGTCATGACAAGCGTTATATGCATACTGTTGCAGTACATTGTGCCGTTGAGGATGTCGGAGGAGGATATGGTGATCGGCGATGAGGCGGCGCACGGCGAAGAAGCTTATGCTATATGGGGACAGGGAGAGAAGCTTGATAGTTCTAAGTATGATGCGGAGTTGCCGGTGGTGGCCAAACATAGGCATGCTGCTGGCCATGTTGAAATGGCTTGA 1437 49.83 MSNLPVGVPLPSNLVVDAADPDWMSKGDNAWQLTAATLVGLQSVPGLIILYGGAVKKKWAINSAFMALYAFASVLVCWVCWGYRLSFGDKLLPFWGKPNVALDEKFLLDQAFAGKFPSATMVFFQFVFAAITLVLIAGALLGRMNFYAWMLFVPLWLTFSYTFVAFSIWSPNGFFAKVGLIDYSGGYVIHLSSGVAGFTAAYWVGPRLSKDRESFPPNNILLMLAGAGLLWMGWTGFNGGDPYAANVDASLAVLNTHVCTATSLLTWLIFDIVFFRKPSVIGAVQGMITGLVCITPAAGIVQGWAAIIMGILSGSIPWFTMMVVHKRSPLLQKVDDTMAVLHTHAIAGSLGGILSGIFAEPKLNNLFYGGYKQYVGLLYGFNTGQAGLGLRQLGIQLLGILFVTIINVVMTSVICILLQYIVPLRMSEEDMVIGDEAAHGEEAYAIWGQGEKLDSSKYDAELPVVAKHRHAAGHVEMA 478
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 2704473 2706519 + evm.model.ptg000015l.415 HCH4g0415 542659
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
HCH4g0415 478 SUPERFAMILY Ammonium transporter 23 426 - -
HCH4g0415 478 Gene3D Ammonium transporter AmtB like domains 12 448 IPR029020 -
HCH4g0415 478 Pfam Ammonium Transporter Family 30 444 IPR024041 GO:0008519(InterPro)|GO:0016020(InterPro)|GO:0072488(InterPro)
HCH4g0415 478 NCBIfam ammonium transporter 28 444 IPR001905 GO:0008519(InterPro)|GO:0016020(InterPro)|GO:0072488(InterPro)
HCH4g0415 478 ProSitePatterns Ammonium transporters signature. 182 207 IPR018047 GO:0008519(InterPro)|GO:0016020(InterPro)|GO:0072488(InterPro)
HCH4g0415 478 PANTHER AMMONIUM TRANSPORTER MEP2 22 455 IPR001905 GO:0005886(PANTHER)|GO:0008519(InterPro)|GO:0008519(PANTHER)|GO:0016020(InterPro)|GO:0072488(PANTHER)|GO:0072488(InterPro)
HCH4g0415 478 PRINTS Rhesus blood group protein signature 252 274 IPR002229 GO:0005886(InterPro)
HCH4g0415 478 PRINTS Rhesus blood group protein signature 125 141 IPR002229 GO:0005886(InterPro)
HCH4g0415 478 PRINTS Rhesus blood group protein signature 221 239 IPR002229 GO:0005886(InterPro)
HCH4g0415 478 FunFam Ammonium transporter 13 447 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
HCH14g0689 HCH-Chr14:35367082 HCH4g0415 HCH-Chr4:2704473 5.20E-159 dispersed
HCH2g0316 HCH-Chr2:43114283 HCH4g0415 HCH-Chr4:2704473 3.70E-168 dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
HCH4g0415 K03320 - csv:101210590 855.514