Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
HCH4g0416 ATGGAGACTCCATTCGAGGGGATAGTGAAAGATTTCAATGGGAGATTAGCATGTTATAAGCAGGATTGGTTAGGTGCACTCTGTTCAGGAGTCAGGATCTTGGCTCCTACTATGTACATCTTCTTTGCCTCTGCTCTTCCTGTTATTGCCTTTGGTGAGCAACTTCATAGGGATACAGATGGAAGCTTGAGCACAGTGGAAACATTAGCCTCAACTGCCCTGTGTGGAATCCTTCACTCAATCTTTGGGGGGCAGCCATTGCTGATTGTAGGAGTGGCAGAACCTACAGTTATAATGTATACTTACCTGTACAATTTCTGCAGAAGCCGACCAGAGTTAGGAGGCAAGCTCTTCTTAGCCTGGGCTGGATGGGTGTGTGTGTGGACATCATTCCTGTTGATCCTCCTTGCAATCTTCAATGCATGCAACATCATCAACAAATTTACAAGAGTTGCAGGGGAACTATTTGGCATGCTCATTTCTGTCCTTTTCATCCAAGAGGCAATAAGGGGGTTGATCAGCGAGTTCAATATTCCCAAGTCAGAAAATCCAGCAGAGTTGAAGAACCAATTTCAATGGTTGTATGCTAATGGGTTGCTCGCTATCATATTTTCAGTTGGTCTACTCGTTACTGCCCTCAAAAGCAGAAGGGCAAGATCATGGAGATATGGCACAGGCTGGTTTCGGGGTTTCATCGCAGATTATGGGGTTCCATTTATGGTCCTGTTTTGGACAGCATTGTCTTATGGAGTTCCCAGCAAAGTTCCAGAAGAAGTTCCAAGGAGACTCTTTTGTCCATTACCTTGGGAACCAGCCTCATTGTACCATTGGACTGTTGTCATGGACATGGGAAAGGTCCCAATAATGTATATCTTTGCTGCTTTTATTCCAGCAATGATGATAGCAGGACTGTATTTCTTTGATCATAGTGTGGCTTCACAATTGGCACAACAGAAAGAGTTTAATCTCCAAAATCCATCTGCCTATCATTATGATATACTCTTACTTGGAATTATGACTTTGATTTGTGGATTGCTTGGACTTCCTCCTTCTAATGGTGTCCTTCCACAGTCTCCAATGCATACCAAGAGTCTTGCAGTGCTCAAACGGCAGTTAATCAAAAGAAAAATGGTGAAGCGAGCAAAAGAATGTATCAAACTAAAAGCGAGCAACTCAGAAATTTATGGAAAGATGCAAGATGTGTTCCTTGAAATGGATACATCTCCAACTCCTAATGAGCTAGAAAATTTGAAGAATGCAGTGATGAATAACAATGATGGCGGAGATAAGAAGGTAAAATTTGATCCCGAGAAACACATCGATGCTTATTTACCGGTTCGTGTGAATGAGCAGAGGATAAGCAACTTGCTGCAATCCCTGCTCGTGGCTGCATCACTTTTTGCGGTCCCCATAATGAAAATGATTCCCACCTCAGTTCTTTGGGGATATTTTGCTTATATGGCCATTGATAGTCTCCCAGGAAATCAGTTCTGGGAAAGGATGTTACTACTCTTCATCACGCCCGGTCGGCGATTCAAGGTATTGGAAGGTTCTCATTTATCATTCATGGAATCAGTCCCATTCAAGAGCATTGCTATGTTCACCCTCTTCCAATTTGCATATTTCCTGTTGTGCTATGGAGTGACATGGATACCTATAGCTGGAATATTGTTCCCAATTCCATTCTTCCTCCTCATAAGCATAAGAGAGCATATGCTTCCCAAGTTCTTCCAGCCAGACCATCTTCAAGAGCTGGATGCCTCAGAGTATGAGGTGGTTGCCAGTGCCCTACAACGCGCCCTGACGCTAACAGAAAAGCAACCACTCATTAATGAGAATAACGATGAGTTCTATGACGCCGAGATATTAGACGAGCTTACAACTCATAGAGGAGAGTTGAAGCTTAGAACCATAAGTTTCAATGAAGAAAGGTTCTATCAGATTCATCCTGAAAGCTCCCTTCGGATACGAGGGTGA 1977 43.15 METPFEGIVKDFNGRLACYKQDWLGALCSGVRILAPTMYIFFASALPVIAFGEQLHRDTDGSLSTVETLASTALCGILHSIFGGQPLLIVGVAEPTVIMYTYLYNFCRSRPELGGKLFLAWAGWVCVWTSFLLILLAIFNACNIINKFTRVAGELFGMLISVLFIQEAIRGLISEFNIPKSENPAELKNQFQWLYANGLLAIIFSVGLLVTALKSRRARSWRYGTGWFRGFIADYGVPFMVLFWTALSYGVPSKVPEEVPRRLFCPLPWEPASLYHWTVVMDMGKVPIMYIFAAFIPAMMIAGLYFFDHSVASQLAQQKEFNLQNPSAYHYDILLLGIMTLICGLLGLPPSNGVLPQSPMHTKSLAVLKRQLIKRKMVKRAKECIKLKASNSEIYGKMQDVFLEMDTSPTPNELENLKNAVMNNNDGGDKKVKFDPEKHIDAYLPVRVNEQRISNLLQSLLVAASLFAVPIMKMIPTSVLWGYFAYMAIDSLPGNQFWERMLLLFITPGRRFKVLEGSHLSFMESVPFKSIAMFTLFQFAYFLLCYGVTWIPIAGILFPIPFFLLISIREHMLPKFFQPDHLQELDASEYEVVASALQRALTLTEKQPLINENNDEFYDAEILDELTTHRGELKLRTISFNEERFYQIHPESSLRIRG 658
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 2710035 2713645 + evm.model.ptg000015l.416 HCH4g0416 542660
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
HCH4g0416 658 Gene3D Helical hairpin bin 15 56 - -
HCH4g0416 658 FunFam probable boron transporter 2 15 57 - -
HCH4g0416 658 PANTHER ANION EXCHANGE PROTEIN 2 630 IPR003020 GO:0005452(InterPro)|GO:0005886(PANTHER)|GO:0006820(InterPro)|GO:0016020(InterPro)|GO:0022857(PANTHER)|GO:0050801(PANTHER)|GO:0055085(PANTHER)
HCH4g0416 658 Pfam HCO3- transporter integral membrane domain 446 588 IPR011531 GO:0006820(InterPro)|GO:0016020(InterPro)
HCH4g0416 658 Pfam HCO3- transporter integral membrane domain 192 371 IPR011531 GO:0006820(InterPro)|GO:0016020(InterPro)
HCH4g0416 658 Pfam HCO3- transporter integral membrane domain 4 178 IPR011531 GO:0006820(InterPro)|GO:0016020(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
HCH4g0416 HCH-Chr4:2710035 HCH6g0432 HCH-Chr6:11121183 1.80E-218 dispersed
HCH4g0416 HCH-Chr4:2710035 HCH6g0199 HCH-Chr6:2666437 3.80E-280 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
HCH4g0416 K24194 - csv:101220188 1093.95