Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
HCH4g0427 ATGCAAGAGCAAGCTACTAGTTCAGCTGCAGCTAGTTCATTGCCTTCTAGCAGTGAAAGATCTTCCAGTTCTGCTCTTCATCTTGAAGTTAAAGAAGGAATGGAGAGTGATGAGGAGATCCGGAGAGTGCCGGAGATAGGTGGTGAATCAGCTGGAACATCAGCTTCCGGGAGAGATACCGGCTCGGTTGCCGGTCCAGACCGGGTTCAAGCTTCAAGGGAAAGTCAAAGGAAGAGAGGTAGAAGTCCTGCTGACAAAGAAAGCAAGAGACTCAAGAGATTGCTGAGAAATAGAGTATCGGCACAACAAGCAAGGGAGAGAAAAAAGGCATATTTGAGTGAGTTAGAGATAAGGGTGAAGGATTTGGAGAGGAAGAATTCAGAACTTGAAGAAAGACTTTCCACTTTGCAAAACGAGAATCAGATGCTTAGACAGATATTGAAGAACACAACTGCGAGCAGGAGAAGTGGGGAGTGA 477 45.91 MQEQATSSAAASSLPSSSERSSSSALHLEVKEGMESDEEIRRVPEIGGESAGTSASGRDTGSVAGPDRVQASRESQRKRGRSPADKESKRLKRLLRNRVSAQQARERKKAYLSELEIRVKDLERKNSELEERLSTLQNENQMLRQILKNTTASRRSGE 158
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 2797134 2798412 + evm.model.ptg000015l.427 HCH4g0427 542671
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
HCH4g0427 158 ProSiteProfiles Basic-leucine zipper (bZIP) domain profile. 87 150 IPR004827 GO:0003700(InterPro)|GO:0006355(InterPro)
HCH4g0427 158 Gene3D Single helix bin 108 149 - -
HCH4g0427 158 MobiDBLite consensus disorder prediction 30 45 - -
HCH4g0427 158 FunFam Transcription factor HY5 108 149 - -
HCH4g0427 158 SUPERFAMILY Leucine zipper domain 89 147 IPR046347 GO:0003700(InterPro)|GO:0006355(InterPro)
HCH4g0427 158 MobiDBLite consensus disorder prediction 71 108 - -
HCH4g0427 158 CDD bZIP_HY5-like 90 141 - -
HCH4g0427 158 MobiDBLite consensus disorder prediction 1 108 - -
HCH4g0427 158 PANTHER TRANSCRIPTIONAL ACTIVATOR HAC1 1 156 IPR044280 GO:0000981(InterPro)|GO:0005634(PANTHER)|GO:0010017(PANTHER)|GO:0010099(PANTHER)|GO:0010114(PANTHER)|GO:0010218(PANTHER)|GO:0045944(InterPro)
HCH4g0427 158 SMART brlzneu 85 149 IPR004827 GO:0003700(InterPro)|GO:0006355(InterPro)
HCH4g0427 158 MobiDBLite consensus disorder prediction 1 24 - -
HCH4g0427 158 Coils Coil 84 153 - -
HCH4g0427 158 Pfam bZIP transcription factor 86 147 IPR004827 GO:0003700(InterPro)|GO:0006355(InterPro)
HCH4g0427 158 ProSitePatterns Basic-leucine zipper (bZIP) domain signature. 92 107 IPR004827 GO:0003700(InterPro)|GO:0006355(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
HCH12g0352 HCH-Chr12:2005148 HCH4g0427 HCH-Chr4:2797134 2.50E-34 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
33424 PF00170 bZIP_1 2.00E-14 CL0018 HCH TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
HCH4g0427 K16241 - csv:101218051 265.774