Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
HCH4g0433 ATGGGAGAAACAAAGGACATTGAATATGAGGAAGAGCTCCTCGACTACGAGGAAGATGAAGAGAAGGCTCCCGATTCTGTTGGGGCTAAAGTCAACGGTGAAGCTGGAAAGAAGGGCTATGTTGGAATTCACAGTTCAGGATTTAGAGACTTCCTTTTGAAGCCAGAGCTTCTCCGTGCTATTGTGGATTCTGGATTTGAGCACCCATCTGAAGTGCAACATGAATGTATTCCCCAAGCTATCCTCGGCATGGATGTCATTTGTCAGGCAAAATCTGGTATGGGTAAAACTGCTGTTTTTGTTCTGTCAACCCTGCAGCAGATTGACCCTGTTGCAGGTCAAGTTTCTGCTCTGGTTCTATGCCATACCAGGGAGCTAGCATACCAGATTTGTCACGAGTTCGAAAGGTTCAGCACTTATCTTCCTGATCTGAAGATTGCTGTGTTCTACGGTGGGGTCAATATTAAGATTCATAAAGATCTACTGAAAAATGAATGCCCTCATATTGTCGTTGGAACACCTGGAAGAATTTTGGCATTGGCAAGAGACAAAGACCTTTCTTTGAAGAATGTTAGGCATTTCATTCTTGATGAATGTGACAAGATGCTTGAGTCACTTGATATGAGGAGGGATGTGCAGGAGATTTTCAAGATGACTCCTCATGACAAACAAGTTATGATGTTTTCTGCAACACTCAGCAAAGAAATTCGCCCGGTTTGCAAGAAGTTTATGCAAGATCCAATGGAAATTTATGTGGATGATGAGGCAAAGTTGACATTGCATGGTCTTGTCCAGCACTATATCAAATTGAGCGAGATGGAGAAAAACCGGAAGTTGAATGACCTCCTTGACGCACTGGACTTCAATCAAGTAGTTATTTTTGTAAAGAGTGTTAATAGGGCAGCTGAGCTGGACAAGCTACTGGTGGAGTGTAATTTCCCGTCTATATGCATCCACTCTGGCATGTCTCAGGAAGAAAGGTTGACACGGTACAAGGGTTTCAAGGAAGGACATAAGAGGATTCTAGTGGCTACAGATTTGGTTGGTCGGGGAATTGACATTGAACGTGTGAATATTGTCATCAATTATGACATGCCAGATTCTGCTGATACTTATTTGCACAGGGTTGGTAGAGCTGGTAGGTTTGGTACCAAAGGGCTTGCGATTACTTTTGTCTCATCTGCAGCTGACTCCGATGTTCTCAATAATGTTCAAGAAAGGTTTGAAGTGGATATTAAGGAGCTTCCAGAGCAGATTGATACATCCACATATATGCCATCATAG 1284 42.83 MGETKDIEYEEELLDYEEDEEKAPDSVGAKVNGEAGKKGYVGIHSSGFRDFLLKPELLRAIVDSGFEHPSEVQHECIPQAILGMDVICQAKSGMGKTAVFVLSTLQQIDPVAGQVSALVLCHTRELAYQICHEFERFSTYLPDLKIAVFYGGVNIKIHKDLLKNECPHIVVGTPGRILALARDKDLSLKNVRHFILDECDKMLESLDMRRDVQEIFKMTPHDKQVMMFSATLSKEIRPVCKKFMQDPMEIYVDDEAKLTLHGLVQHYIKLSEMEKNRKLNDLLDALDFNQVVIFVKSVNRAAELDKLLVECNFPSICIHSGMSQEERLTRYKGFKEGHKRILVATDLVGRGIDIERVNIVINYDMPDSADTYLHRVGRAGRFGTKGLAITFVSSAADSDVLNNVQERFEVDIKELPEQIDTSTYMPS 427
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 2828547 2832613 - evm.model.ptg000015l.433 HCH4g0433 542677
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
HCH4g0433 427 FunFam DEAD-box ATP-dependent RNA helicase 259 427 - -
HCH4g0433 427 Pfam DEAD/DEAH box helicase 71 236 IPR011545 GO:0003676(InterPro)|GO:0005524(InterPro)
HCH4g0433 427 Pfam Helicase conserved C-terminal domain 275 383 IPR001650 -
HCH4g0433 427 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 115 394 IPR027417 -
HCH4g0433 427 CDD SF2_C_DEAD 263 392 - -
HCH4g0433 427 CDD DEADc_DDX39 45 252 - -
HCH4g0433 427 SMART ultradead3 65 266 IPR014001 -
HCH4g0433 427 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 278 423 IPR001650 -
HCH4g0433 427 FunFam DEAD-box ATP-dependent RNA helicase 56-like 34 252 - -
HCH4g0433 427 Gene3D - 259 426 IPR027417 -
HCH4g0433 427 SMART helicmild6 302 383 IPR001650 -
HCH4g0433 427 PANTHER ATP-DEPENDENT RNA HELICASE DBP3 46 410 - GO:0003723(PANTHER)|GO:0003724(PANTHER)
HCH4g0433 427 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 77 250 IPR014001 -
HCH4g0433 427 Gene3D - 42 258 IPR027417 -
HCH4g0433 427 ProSiteProfiles DEAD-box RNA helicase Q motif profile. 46 74 IPR014014 GO:0003724(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
HCH4g0433 HCH-Chr4:2828547 HCH7g1614 HCH-Chr7:48363434 2.10E-69 dispersed
HCH4g0433 HCH-Chr4:2828547 HCH4g1493 HCH-Chr4:11299365 2.20E-63 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
HCH4g0433 K12812 - csv:101217346 833.943