Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
HCH4g0435 ATGCCGCGTTTGCTTCATGGGACGCTTCTTGCTACCATATTTGGAATCGATAGGCTTCAAACTGGATTGCCTATTTTCTGCGGAAAGGATAAGAGGTCGACAAAAAAATTTCTTGCTGGAGTTAAGAGATGCATCCTCTGCCGGCCTGAGATTGTTGGATCTAAAATGTATGCAACAGTTGATCTGGATAAGGCCCGAGTTGGTCGGACGCGAATTGTAGATCAACCGTATAGACCTCAATGGAATGAGTCCTTTCGTATATATTGTGCCCATACAGTCTCTCATGTTATATTCACAGTTAAAGATGGAGATGTAATTGGTGCAACACTAATAGGAAGAGCTTATGTACCAGTTGAGGATATCATAAAAGGTTATGTATATGAGAGATGGGTTGAAATATTAGATGAAGATCATAATCCTATCCACGGCCATTCTAGGATCTATGTTAAATTGCAATTTCTCAATATTAACGAAGACAAGAATTGGTCTCGAGGAATTCAAGATCCGCAGTTTGGTGGCGTTCCTTACACATTCTTCAAACAAAGATGGGGTTGCAAAGTTTCGCTTTACCAGGATGCCCATATTCCAAATAACTTCCTTCCTTTAATTGGTCTCTCTGGAGGGAATTATCATGAAATACACAGGTGTTGGGAGGACGTTTTTGATGCAATCAGCAACGCAAGACACCTGATCTACATAACTGGATGGTCGGTGTATACAGAAATAACCTTGATACGAGACCGAGAAAGGCGAAGGACAGGAGATGATATTACTCTTGGGCAACTACTAAAGAAGAAGGCAGATGAAGGTGTGACTGTTTTGATTCTTGTTTGGGATGACAGAACTTCCATCCAGGATATCAGAGAAGACGGTTTGATGGCAACTCACGATGAAGAAACTGCAAGATACTTCAAGGACTCAAACGTACATTGCGTTCTATGCCCGCGAGATCCTGATGTTGGAAAAAGCATTATTCAGGGGTTTAAGACTGCTACAATGTTTACCCACCATCAGAAAACCATCGTGGTTGATAGTGAGATGGCTGGTGGAGGATCAGAGAAGAGGAGAATTGTGAGTTTTGTTGGTGGTATTGATCTTTGTGACGGGAGATATGATACACCGAAACATCCATTATTTTCAACTCTAGACTCAATCCACTATACTGATTTTCATCAGCCCAACTTTTTAGGCTCTTCAATCAAGAAAGGGGGTCCAAGAGAGCCATGGCATGATATCCATTGCCGCCTAGAAGGGCCGGTTGCTTGGGATCTCTTATACAATTTTGAGCAAAGATGGAAAAAGCAAGTTGGAAATAACTTGTTGATGACACAAAGAAAGCTTGAAGAAAGTATTACCCGCCCGTTAATGGTTTTACCATCAGATGATCCTGACACATGGAATGTTCAGATATTCCGATCAATTGATGGTGGTGCAGTTGTGGGCTTTCCTGAGATACCTGCAGATGCAGCCAGATTTGGCCTTGTCACAGGGAAGGATAATGTCATAGATAGGAGCATTCAAGATGCTTACATTCATGCTATTCGACGTGCAAAAGATTTCATATACATTGAAAATCAATATTTCCTCGGAAGCTCTTATGGCTGGAAATCAAATGGTGTGGGGGTGGAAGAACCCAATGCTTTGCATGTTAAACCAGATGAGCCGAAGAGCTGGAATCCGGATGCGATAAAGGTAGAAGGAATCAATGCTTTGCATCTGATACCGAAGGAGCTTTCACTAAAGATCGTGAGTAAGATTGAAGCTGGAGAAAGATTTGCTGTATATGTTGTGATTCCAATGTGGCCAGAAGGTAATCCTGAGAGTGCCTCAGTTCAGGCAATATTAGACTGGCAAAGGAGAACCATGAATATGATGTACACAGATATCACTCAAGCACTTCGAAAGAAGGGTCTCGATTCAGATCCTAGAGATTACTTGACATTCTTCTGCCTTGGCAACCGAGAGAAGAAGCGAACTGGGGAATATGCTCCACTAGAGAAACCAGAGGCCAACTCAAATTATGCTCGGGCTCAAGAGTTCCGACGTTTTATGATCTATGTTCATTCGAAAATGATGATAGTTGACGACGAATACATAATAGTTGGATCAGCCAACATCAACCAGAGATCAATGGATGGTGGAAGAGACTCTGAGATTGCCATGGGAGCTTATCAACCACATCACTTGGCATCTAGTGGGCCTGCAAGAGGGCAAATCTATGGCTTTCGGGCGGCTCTATGGTACGAGCATCTTGGTATATTTGACAGGGTCTTCCAGAATCCAGAGAGTGAAGACTGCATCCAAGTCCTAAACAAAATTGCTCATCAAAACTGGCAACTTTACTCAGACGACACCTTTGATGGTGATCTTCCTAGTCACCTTCTTCGCTACCCGATTGAAGTAGGTCATGATGGATCGGTTTCGGCGTTTGCCAATGTCGAATTTTTCCCTGACACAAAGGCTCGTGTTCTTGGCCAATACTCTGATTATCTACCTCCAATCCTCACCACTTGA 2514 42.72 MPRLLHGTLLATIFGIDRLQTGLPIFCGKDKRSTKKFLAGVKRCILCRPEIVGSKMYATVDLDKARVGRTRIVDQPYRPQWNESFRIYCAHTVSHVIFTVKDGDVIGATLIGRAYVPVEDIIKGYVYERWVEILDEDHNPIHGHSRIYVKLQFLNINEDKNWSRGIQDPQFGGVPYTFFKQRWGCKVSLYQDAHIPNNFLPLIGLSGGNYHEIHRCWEDVFDAISNARHLIYITGWSVYTEITLIRDRERRRTGDDITLGQLLKKKADEGVTVLILVWDDRTSIQDIREDGLMATHDEETARYFKDSNVHCVLCPRDPDVGKSIIQGFKTATMFTHHQKTIVVDSEMAGGGSEKRRIVSFVGGIDLCDGRYDTPKHPLFSTLDSIHYTDFHQPNFLGSSIKKGGPREPWHDIHCRLEGPVAWDLLYNFEQRWKKQVGNNLLMTQRKLEESITRPLMVLPSDDPDTWNVQIFRSIDGGAVVGFPEIPADAARFGLVTGKDNVIDRSIQDAYIHAIRRAKDFIYIENQYFLGSSYGWKSNGVGVEEPNALHVKPDEPKSWNPDAIKVEGINALHLIPKELSLKIVSKIEAGERFAVYVVIPMWPEGNPESASVQAILDWQRRTMNMMYTDITQALRKKGLDSDPRDYLTFFCLGNREKKRTGEYAPLEKPEANSNYARAQEFRRFMIYVHSKMMIVDDEYIIVGSANINQRSMDGGRDSEIAMGAYQPHHLASSGPARGQIYGFRAALWYEHLGIFDRVFQNPESEDCIQVLNKIAHQNWQLYSDDTFDGDLPSHLLRYPIEVGHDGSVSAFANVEFFPDTKARVLGQYSDYLPPILTT 837
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 2846438 2850924 + evm.model.ptg000015l.435 HCH4g0435 542679
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
HCH4g0435 837 Gene3D Endonuclease Chain A 486 731 - -
HCH4g0435 837 Pfam Phospholipase D C terminal 756 826 IPR024632 -
HCH4g0435 837 ProSiteProfiles Phospholipase D phosphodiesterase active site profile. 332 370 IPR001736 GO:0003824(InterPro)
HCH4g0435 837 ProSiteProfiles Phospholipase D phosphodiesterase active site profile. 683 710 IPR001736 GO:0003824(InterPro)
HCH4g0435 837 ProSiteProfiles C2 domain profile. 1 131 IPR000008 -
HCH4g0435 837 SUPERFAMILY Phospholipase D/nuclease 158 448 - -
HCH4g0435 837 CDD C2_plant_PLD 1 154 - -
HCH4g0435 837 SMART C2_3c 8 130 IPR000008 -
HCH4g0435 837 FunFam Phospholipase D 473 729 - -
HCH4g0435 837 SUPERFAMILY Phospholipase D/nuclease 483 766 - -
HCH4g0435 837 PIRSF PLD_plant 1 837 IPR011402 GO:0004630(InterPro)|GO:0005509(InterPro)|GO:0016020(InterPro)|GO:0046470(InterPro)
HCH4g0435 837 Gene3D Endonuclease Chain A 207 456 - -
HCH4g0435 837 Pfam Phospholipase D Active site motif 333 370 IPR001736 GO:0003824(InterPro)
HCH4g0435 837 Pfam Phospholipase D Active site motif 685 710 IPR001736 GO:0003824(InterPro)
HCH4g0435 837 SUPERFAMILY C2 domain (Calcium/lipid-binding domain, CaLB) 53 156 IPR035892 -
HCH4g0435 837 Pfam C2 domain 54 132 IPR000008 -
HCH4g0435 837 PANTHER PHOSPHOLIPASE D 45 824 IPR015679 GO:0004630(PANTHER)|GO:0005886(PANTHER)|GO:0009395(PANTHER)
HCH4g0435 837 FunFam Phospholipase D delta 207 451 - -
HCH4g0435 837 SMART pld_4 332 370 IPR001736 GO:0003824(InterPro)
HCH4g0435 837 SMART pld_4 683 710 IPR001736 GO:0003824(InterPro)
HCH4g0435 837 Gene3D C2 domain 47 166 IPR035892 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
HCH4g0435 HCH-Chr4:2846438 HCH4g0820 HCH-Chr4:5270106 5.80E-201 dispersed
HCH4g0435 HCH-Chr4:2846438 HCH4g1310 HCH-Chr4:9179378 0.00E+00 wgd
HCH4g0435 HCH-Chr4:2846438 HCH6g0221 HCH-Chr6:2927551 0.00E+00 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
HCH4g0435 K01115 - csv:101207900 1432.54