Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
HCH4g0456 | ATGGCGTTCCGTAACCAACACTCTCGTGACCTCCCTCTCTTACCCGATCAACTCTCTCCCTCCGACACTTCAAAACCAGACCTTCCAATTCAAAACACACCCAATTGGCTAAACAACGCCCTTCTCCGAACTCAAAACACCGACACTAACAACACAGACTTCCTTAATCTCCACATGATCGGCGTCGACACCACAACCACTAGTTTGTCACGCGATTCCGATGACTTGAGAGTTAATAATAACAACAGTAGCGTTGGCGTTGGCGTTGGCGGTGACGGTGACGGTGACGGTGAGGGTTTGAAGAACAGTGATGATGTGGCGGTTGAGAGTGAAGATGGTAATTGGAGAATGGGAGGTTTTAAAGCTGAGATTTTGGGGCATCCTCTTTATGAGCAAATGCTTTCTGCTCATGTTGCTTGTCTTCGGATCGCCACTCCCGTCGATCAATTGCCGAGGATTGATTCTCAGATTGCTCTTTCTCAGAATGTCATTTCTAAGTATACTTCTTTAGGTCATGCCTCCATTGCTAATGGCAAAGAGCTTGATCAGTTTATGACACATTATGTTTTACTGCTTTGTTCTTTTAAAGAGCAATTGCAACAACATGTCCGTGTCCATGCGATGGAAGCCGTGTATGCTTGCTGGGAAATTGAGCAATCTCTTCAAAGTTTGACAGGTGTTTCACCAAGTGAAGGTACAGGTGCTACAATGTCCGATGATGATGAGGACCAAATAGATAGTGATGCTAATTTGTTTGATGGAAGTTTCGAGGGACATGATACTATGGGATTTGGTCCACTTATTCCAACTGAGAGTGAAAGATCATTGATGGAGAGGGTGAGACACGAATTGAAGCATGAACTAAAGAATGGCTACAAGGAGAAAATTGTAGACATAAGGGAGGAAATTTTGCGAAAAAGGAGAGCAGGAAAACTTCCTGGTGACACCACGTCTGTCTTAAAAGCTTGGTGGCAATCACATTCAAAATGGCCATATCCTACTGAGGAAGATAAAGCGAAGTTGGTTGTGGAAACTGGTCTGCAATTGAAGCAGATAAACAATTGGTTTATCAATCAGAGGAAGAGGAATTGGCACACCAATCCCTCTACATCAACAGCCTTGAAGAGTAAACGCAAAAGTAATGCAGGTGAGACAACAGGCAGTGGCCATCTTCCATAA | 1179 | 44.02 | MAFRNQHSRDLPLLPDQLSPSDTSKPDLPIQNTPNWLNNALLRTQNTDTNNTDFLNLHMIGVDTTTTSLSRDSDDLRVNNNNSSVGVGVGGDGDGDGEGLKNSDDVAVESEDGNWRMGGFKAEILGHPLYEQMLSAHVACLRIATPVDQLPRIDSQIALSQNVISKYTSLGHASIANGKELDQFMTHYVLLLCSFKEQLQQHVRVHAMEAVYACWEIEQSLQSLTGVSPSEGTGATMSDDDEDQIDSDANLFDGSFEGHDTMGFGPLIPTESERSLMERVRHELKHELKNGYKEKIVDIREEILRKRRAGKLPGDTTSVLKAWWQSHSKWPYPTEEDKAKLVVETGLQLKQINNWFINQRKRNWHTNPSTSTALKSKRKSNAGETTGSGHLP | 392 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
4 | 2948091 | 2950966 | - | evm.model.ptg000015l.456 | HCH4g0456 | 542700 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
HCH4g0456 | 392 | MobiDBLite | consensus disorder prediction | 71 | 87 | - | - | |
HCH4g0456 | 392 | SMART | KNOX2_2 | 171 | 226 | IPR005541 | GO:0003677(InterPro)|GO:0005634(InterPro) | |
HCH4g0456 | 392 | SUPERFAMILY | Homeodomain-like | 305 | 369 | IPR009057 | - | |
HCH4g0456 | 392 | MobiDBLite | consensus disorder prediction | 71 | 102 | - | - | |
HCH4g0456 | 392 | Pfam | ELK domain | 283 | 304 | IPR005539 | GO:0003677(InterPro) | |
HCH4g0456 | 392 | SMART | ELK_2 | 283 | 304 | IPR005539 | GO:0003677(InterPro) | |
HCH4g0456 | 392 | Gene3D | - | 304 | 365 | - | - | |
HCH4g0456 | 392 | SMART | KNOX1_2 | 118 | 162 | IPR005540 | GO:0003677(InterPro)|GO:0005634(InterPro) | |
HCH4g0456 | 392 | MobiDBLite | consensus disorder prediction | 17 | 31 | - | - | |
HCH4g0456 | 392 | PANTHER | HOMEOBOX PROTEIN TRANSCRIPTION FACTORS | 121 | 365 | IPR050224 | GO:0000978(PANTHER)|GO:0000981(PANTHER)|GO:0006357(PANTHER) | |
HCH4g0456 | 392 | MobiDBLite | consensus disorder prediction | 363 | 392 | - | - | |
HCH4g0456 | 392 | Pfam | Homeobox KN domain | 323 | 362 | IPR008422 | GO:0003677(InterPro)|GO:0006355(InterPro) | |
HCH4g0456 | 392 | FunFam | homeobox protein knotted-1-like 3 isoform X1 | 304 | 365 | - | - | |
HCH4g0456 | 392 | ProSiteProfiles | 'Homeobox' domain profile. | 303 | 366 | IPR001356 | GO:0003677(InterPro) | |
HCH4g0456 | 392 | ProSiteProfiles | ELK domain profile. | 283 | 303 | IPR005539 | GO:0003677(InterPro) | |
HCH4g0456 | 392 | SMART | HOX_1 | 305 | 370 | IPR001356 | GO:0003677(InterPro) | |
HCH4g0456 | 392 | MobiDBLite | consensus disorder prediction | 225 | 246 | - | - | |
HCH4g0456 | 392 | CDD | homeodomain | 306 | 367 | IPR001356 | GO:0003677(InterPro) | |
HCH4g0456 | 392 | MobiDBLite | consensus disorder prediction | 1 | 31 | - | - | |
HCH4g0456 | 392 | Pfam | KNOX2 domain | 175 | 225 | IPR005541 | GO:0003677(InterPro)|GO:0005634(InterPro) | |
HCH4g0456 | 392 | Pfam | KNOX1 domain | 121 | 158 | IPR005540 | GO:0003677(InterPro)|GO:0005634(InterPro) |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
HCH4g0456 | HCH-Chr4:2948091 | HCH5g0461 | HCH-Chr5:3108955 | 3.20E-101 | dispersed | |
HCH12g0393 | HCH-Chr12:2235004 | HCH4g0456 | HCH-Chr4:2948091 | 1.60E-136 | wgd |
Transcription factors information

Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
---|---|---|---|---|---|---|---|
33426 | PF03791 | KNOX2 | 2.20E-19 | No_clan | HCH | TF |
Pathway information
