Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
HCH4g0456 ATGGCGTTCCGTAACCAACACTCTCGTGACCTCCCTCTCTTACCCGATCAACTCTCTCCCTCCGACACTTCAAAACCAGACCTTCCAATTCAAAACACACCCAATTGGCTAAACAACGCCCTTCTCCGAACTCAAAACACCGACACTAACAACACAGACTTCCTTAATCTCCACATGATCGGCGTCGACACCACAACCACTAGTTTGTCACGCGATTCCGATGACTTGAGAGTTAATAATAACAACAGTAGCGTTGGCGTTGGCGTTGGCGGTGACGGTGACGGTGACGGTGAGGGTTTGAAGAACAGTGATGATGTGGCGGTTGAGAGTGAAGATGGTAATTGGAGAATGGGAGGTTTTAAAGCTGAGATTTTGGGGCATCCTCTTTATGAGCAAATGCTTTCTGCTCATGTTGCTTGTCTTCGGATCGCCACTCCCGTCGATCAATTGCCGAGGATTGATTCTCAGATTGCTCTTTCTCAGAATGTCATTTCTAAGTATACTTCTTTAGGTCATGCCTCCATTGCTAATGGCAAAGAGCTTGATCAGTTTATGACACATTATGTTTTACTGCTTTGTTCTTTTAAAGAGCAATTGCAACAACATGTCCGTGTCCATGCGATGGAAGCCGTGTATGCTTGCTGGGAAATTGAGCAATCTCTTCAAAGTTTGACAGGTGTTTCACCAAGTGAAGGTACAGGTGCTACAATGTCCGATGATGATGAGGACCAAATAGATAGTGATGCTAATTTGTTTGATGGAAGTTTCGAGGGACATGATACTATGGGATTTGGTCCACTTATTCCAACTGAGAGTGAAAGATCATTGATGGAGAGGGTGAGACACGAATTGAAGCATGAACTAAAGAATGGCTACAAGGAGAAAATTGTAGACATAAGGGAGGAAATTTTGCGAAAAAGGAGAGCAGGAAAACTTCCTGGTGACACCACGTCTGTCTTAAAAGCTTGGTGGCAATCACATTCAAAATGGCCATATCCTACTGAGGAAGATAAAGCGAAGTTGGTTGTGGAAACTGGTCTGCAATTGAAGCAGATAAACAATTGGTTTATCAATCAGAGGAAGAGGAATTGGCACACCAATCCCTCTACATCAACAGCCTTGAAGAGTAAACGCAAAAGTAATGCAGGTGAGACAACAGGCAGTGGCCATCTTCCATAA 1179 44.02 MAFRNQHSRDLPLLPDQLSPSDTSKPDLPIQNTPNWLNNALLRTQNTDTNNTDFLNLHMIGVDTTTTSLSRDSDDLRVNNNNSSVGVGVGGDGDGDGEGLKNSDDVAVESEDGNWRMGGFKAEILGHPLYEQMLSAHVACLRIATPVDQLPRIDSQIALSQNVISKYTSLGHASIANGKELDQFMTHYVLLLCSFKEQLQQHVRVHAMEAVYACWEIEQSLQSLTGVSPSEGTGATMSDDDEDQIDSDANLFDGSFEGHDTMGFGPLIPTESERSLMERVRHELKHELKNGYKEKIVDIREEILRKRRAGKLPGDTTSVLKAWWQSHSKWPYPTEEDKAKLVVETGLQLKQINNWFINQRKRNWHTNPSTSTALKSKRKSNAGETTGSGHLP 392
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 2948091 2950966 - evm.model.ptg000015l.456 HCH4g0456 542700
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
HCH4g0456 392 MobiDBLite consensus disorder prediction 71 87 - -
HCH4g0456 392 SMART KNOX2_2 171 226 IPR005541 GO:0003677(InterPro)|GO:0005634(InterPro)
HCH4g0456 392 SUPERFAMILY Homeodomain-like 305 369 IPR009057 -
HCH4g0456 392 MobiDBLite consensus disorder prediction 71 102 - -
HCH4g0456 392 Pfam ELK domain 283 304 IPR005539 GO:0003677(InterPro)
HCH4g0456 392 SMART ELK_2 283 304 IPR005539 GO:0003677(InterPro)
HCH4g0456 392 Gene3D - 304 365 - -
HCH4g0456 392 SMART KNOX1_2 118 162 IPR005540 GO:0003677(InterPro)|GO:0005634(InterPro)
HCH4g0456 392 MobiDBLite consensus disorder prediction 17 31 - -
HCH4g0456 392 PANTHER HOMEOBOX PROTEIN TRANSCRIPTION FACTORS 121 365 IPR050224 GO:0000978(PANTHER)|GO:0000981(PANTHER)|GO:0006357(PANTHER)
HCH4g0456 392 MobiDBLite consensus disorder prediction 363 392 - -
HCH4g0456 392 Pfam Homeobox KN domain 323 362 IPR008422 GO:0003677(InterPro)|GO:0006355(InterPro)
HCH4g0456 392 FunFam homeobox protein knotted-1-like 3 isoform X1 304 365 - -
HCH4g0456 392 ProSiteProfiles 'Homeobox' domain profile. 303 366 IPR001356 GO:0003677(InterPro)
HCH4g0456 392 ProSiteProfiles ELK domain profile. 283 303 IPR005539 GO:0003677(InterPro)
HCH4g0456 392 SMART HOX_1 305 370 IPR001356 GO:0003677(InterPro)
HCH4g0456 392 MobiDBLite consensus disorder prediction 225 246 - -
HCH4g0456 392 CDD homeodomain 306 367 IPR001356 GO:0003677(InterPro)
HCH4g0456 392 MobiDBLite consensus disorder prediction 1 31 - -
HCH4g0456 392 Pfam KNOX2 domain 175 225 IPR005541 GO:0003677(InterPro)|GO:0005634(InterPro)
HCH4g0456 392 Pfam KNOX1 domain 121 158 IPR005540 GO:0003677(InterPro)|GO:0005634(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
HCH4g0456 HCH-Chr4:2948091 HCH5g0461 HCH-Chr5:3108955 3.20E-101 dispersed
HCH12g0393 HCH-Chr12:2235004 HCH4g0456 HCH-Chr4:2948091 1.60E-136 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
33426 PF03791 KNOX2 2.20E-19 No_clan HCH TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
HCH4g0456 - - - 0.0