Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
HCH4g0459 ATGAAGCTTCTTCGTCTATCAGCTCCTGCTCCCGTTTCTCCATTTTCTGCTTCAATGTCTGCTTTTTCTCCAGGAATTCCAATGGGAATGGAGAGCCTTCAGAATGATGCTCATAAGAAAATGCTAATTGCTCTTATTGTGTGTTCTTCACTTGCTGCAATCATAGTGGTTTCCTTGTGTTTTTGGATTTTTCATAGAAGATATAAATACAAGTATCAGAAAAGAAGTTTTAGAAGCTCAGATGCTGAGAAAGGTCTTGTTGGGTTGGCTCCAATCTTGCGTAAATTCAGCTCCAACAAAATGGTTGCTAGTAAAATATCTGTTCCAATGATTGATTATGAGATATTAGAAAAGGCCACAGATGTTTTCCAGGAAAGTAATGTTTTGGGGGAGGGTGGATTTGGACGTGTTTACAAGGCTCAATTGGATAATAACTTACTTGTTGCTGTCAAAAAACTCGAATGTCGCGACAAGGATTCGGAGAGGGAATTCGAGACTGAAGTTGATTTGTTGAGCAAAATTCAACATTCTAATATTATACGCCTATTGGGTTATAGTATTCATGGCGAATCAAGGCTTCTGGTTTACGAGCTGATGGAGAACGGATCGCTGGAGACACTGTTACATGGACCTTCTCATGGTTTGGAATTAACTTGGCACATGAGGATGAAGATTGCTCTTGATGCAGCTAGAGGATTAGAGTATCTGCATGAGCACTGCAAGCCCTCAGTGATACATAGAGATCTGAAATCATCCAATATTCTTTTGGATGCAAATTTCAATGCCAAGCTTTCGGATTTTGGTTTGTCTGTGATTGTTGGGGCACAAAACAAGAACGATATAAAGCTTTCGGGCACGATGGGTTACGTCGCTCCAGAATATCTTTTAGATGGTAAATTGACAGATAAGAGTGATGTCTATGCTTTTGGTGTTGTGCTTCTGGAGCTTCTGTTGGGAAGAAGGCCGGTTGAAAAACTGGCACCATCTCAGTGTCAATCCATTGTCACATGGGCAATGCCACAGCTTACTGATCGATCAAAGTTACCTGAAATCATTGACCCGGCAATTAAAAATACGATGGATCCAAAGCATTTGTTTCAGGTTGCTGCTGTGGCTGTGCTGTGTGTGCAACCAGAACCGAGCTATCGCCCGTTAATAACAGATGTTCTGCACTCTCTTATTCCTCTTGTTCCCATAGAGCTTGGAGGGACGCTAAGAACAACGCAACCTGCAGCTCTTGTGGCTCCATCTTAG 1254 41.79 MKLLRLSAPAPVSPFSASMSAFSPGIPMGMESLQNDAHKKMLIALIVCSSLAAIIVVSLCFWIFHRRYKYKYQKRSFRSSDAEKGLVGLAPILRKFSSNKMVASKISVPMIDYEILEKATDVFQESNVLGEGGFGRVYKAQLDNNLLVAVKKLECRDKDSEREFETEVDLLSKIQHSNIIRLLGYSIHGESRLLVYELMENGSLETLLHGPSHGLELTWHMRMKIALDAARGLEYLHEHCKPSVIHRDLKSSNILLDANFNAKLSDFGLSVIVGAQNKNDIKLSGTMGYVAPEYLLDGKLTDKSDVYAFGVVLLELLLGRRPVEKLAPSQCQSIVTWAMPQLTDRSKLPEIIDPAIKNTMDPKHLFQVAAVAVLCVQPEPSYRPLITDVLHSLIPLVPIELGGTLRTTQPAALVAPS 417
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 2967227 2969969 + evm.model.ptg000015l.459 HCH4g0459 542703
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
HCH4g0459 417 ProSiteProfiles Protein kinase domain profile. 123 394 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
HCH4g0459 417 FunFam probable receptor-like protein kinase At1g80640 199 398 - -
HCH4g0459 417 Pfam Protein tyrosine and serine/threonine kinase 126 352 IPR001245 GO:0004672(InterPro)|GO:0006468(InterPro)
HCH4g0459 417 Gene3D Phosphorylase Kinase; domain 1 89 198 - -
HCH4g0459 417 PANTHER OS01G0750732 PROTEIN 27 396 IPR050885 -
HCH4g0459 417 FunFam Protein kinase superfamily protein 90 198 - -
HCH4g0459 417 SUPERFAMILY Protein kinase-like (PK-like) 99 393 IPR011009 -
HCH4g0459 417 CDD STKc_IRAK 129 396 - -
HCH4g0459 417 SMART serkin_6 123 394 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
HCH4g0459 417 ProSitePatterns Protein kinases ATP-binding region signature. 129 152 IPR017441 GO:0005524(InterPro)
HCH4g0459 417 Gene3D Transferase(Phosphotransferase) domain 1 199 398 - -
HCH4g0459 417 ProSitePatterns Serine/Threonine protein kinases active-site signature. 244 256 IPR008271 GO:0004672(InterPro)|GO:0006468(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
HCH4g0459 HCH-Chr4:2967227 HCH8g0133 HCH-Chr8:5392505 3.80E-76 dispersed
HCH12g1637 HCH-Chr12:43476148 HCH4g0459 HCH-Chr4:2967227 1.50E-108 transposed
HCH12g0398 HCH-Chr12:2274416 HCH4g0459 HCH-Chr4:2967227 1.90E-155 wgd
HCH4g0459 HCH-Chr4:2967227 HCH4g1273 HCH-Chr4:8778717 7.00E-139 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
81447 PF00069 Pkinase 1.00E-48 CL0016 HCH PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
HCH4g0459 - - - 0.0