Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
HCH4g0461 ATGGGTAGAACACAACAAAGATTTCGTGGCGTTCGACAACGGCATTGGGGCTCTTGGGTCTCCGAAATTCGTCACCCTTTATTGAAGACGAGAATTTGGTTAGGCACTTTTGAAACTGCCGAAGATGCGGCTCGGGCCTATGACGAAGCAGCACGGCTCATGTGCGGCCCAAGGGCGGCTAGAACCAACTTCCCTTATGACCCCGCCTTCTCTCTTTCTTCATCTTCCAAACTTCTGTCTGCTACTCTTACTGCCAAACTCAACCGTTGCTATATGGCCTCTCTACACCTCACCAACCATAACCAATCCCTCCACCGCCGACTACCCGCCTCAGCCATTGCACCACTCGCAGACCAACCGGCAACGAAAGCGGTGCCGGAGAATGAGCAGTTGATGAAGATTAAGCCGCTTGAAGATGATCATATTGAGCAAATGATTGAGGAACTGCTTCATTATGGGTCCATCGAGCTCGTTGAGACTATTTGA 486 50.62 MGRTQQRFRGVRQRHWGSWVSEIRHPLLKTRIWLGTFETAEDAARAYDEAARLMCGPRAARTNFPYDPAFSLSSSSKLLSATLTAKLNRCYMASLHLTNHNQSLHRRLPASAIAPLADQPATKAVPENEQLMKIKPLEDDHIEQMIEELLHYGSIELVETI 161
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 2981854 2982439 + evm.model.ptg000015l.461 HCH4g0461 542705
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
HCH4g0461 161 FunFam Ethylene-responsive transcription factor 2 6 66 - -
HCH4g0461 161 SUPERFAMILY DNA-binding domain 7 66 IPR016177 GO:0003677(InterPro)
HCH4g0461 161 PANTHER SHN SHINE , DNA BINDING / TRANSCRIPTION FACTOR 5 116 IPR050913 -
HCH4g0461 161 Pfam AP2 domain 7 56 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
HCH4g0461 161 PRINTS Ethylene responsive element binding protein signature 8 19 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
HCH4g0461 161 PRINTS Ethylene responsive element binding protein signature 30 46 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
HCH4g0461 161 SMART rav1_2 7 71 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
HCH4g0461 161 ProSiteProfiles AP2/ERF domain profile. 7 65 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
HCH4g0461 161 CDD AP2 6 67 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
HCH4g0461 161 Gene3D AP2/ERF domain 6 66 IPR036955 GO:0003700(InterPro)|GO:0006355(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
HCH4g0461 HCH-Chr4:2981854 HCH6g0276 HCH-Chr6:3882899 6.00E-38 dispersed
HCH4g0461 HCH-Chr4:2981854 HCH4g0462 HCH-Chr4:2986000 2.10E-51 tandem
HCH12g0399 HCH-Chr12:2281322 HCH4g0461 HCH-Chr4:2981854 1.10E-47 wgd
HCH4g0461 HCH-Chr4:2981854 HCH4g1272 HCH-Chr4:8772694 2.30E-42 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
33427 PF00847 AP2 1.60E-11 CL0081 HCH TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
HCH4g0461 - - - 0.0