Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
HCH4g0462 ATGGCCAGACCACAACAGCGATATCGAGGCGTTCGACAAAGGCATTGGGGCTCTTGGGTCTCTGAAATTCGCCACCCTTTATTGAAAACTAGAATCTGGCTCGGCACTTTTGAAACAGCTGAAGATGCCGCAAGAGCCTACGACGAAGCTGCTCGGCTCATGTGCGGACCAAGAGCCAAAACCAATTTCCCTTTCAATCCAAATGAGTCACACTCTTCTCCTTCTAAACTCCTATCAGCAAATTTAACAGCCAAACTCAATCGTTGCTACATGGCTTCTCTCCAAATGACACAGAAACCGACATCTCATCGTTTCAACACCGGCATTGCCATGTCCGGGAAAGCTGTCGAATTCGGCACATCGATGACCGAGAAGAGAATGGTAGCGGAGCAAGAGGCGTCGGATAGCTGGGTAGTGAAAAAGGTGCAATCAGAAAGCAACCATCAGCCGTTTGAGGAGCTGGAAGAGGATCACATTGAGCAGATGATAGAGGAGTTACTTCATTATGGATCCATTGAGCTGTGTTCTGTTGTACCATCTCAGCAGGCATTTTGA 555 47.93 MARPQQRYRGVRQRHWGSWVSEIRHPLLKTRIWLGTFETAEDAARAYDEAARLMCGPRAKTNFPFNPNESHSSPSKLLSANLTAKLNRCYMASLQMTQKPTSHRFNTGIAMSGKAVEFGTSMTEKRMVAEQEASDSWVVKKVQSESNHQPFEELEEDHIEQMIEELLHYGSIELCSVVPSQQAF 184
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 2986000 2986783 + evm.model.ptg000015l.462 HCH4g0462 542706
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
HCH4g0462 184 CDD AP2 6 64 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
HCH4g0462 184 SMART rav1_2 7 70 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
HCH4g0462 184 FunFam Ethylene-responsive transcription factor 2 6 66 - -
HCH4g0462 184 PANTHER DEHYDRATION-RESPONSIVE ELEMENT-BINDING PROTEIN 2C 7 156 - GO:0000976(PANTHER)|GO:0003700(PANTHER)|GO:0005634(PANTHER)|GO:0006950(PANTHER)|GO:0045893(PANTHER)
HCH4g0462 184 Pfam AP2 domain 7 56 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
HCH4g0462 184 SUPERFAMILY DNA-binding domain 7 65 IPR016177 GO:0003677(InterPro)
HCH4g0462 184 ProSiteProfiles AP2/ERF domain profile. 7 64 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
HCH4g0462 184 PRINTS Ethylene responsive element binding protein signature 30 46 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
HCH4g0462 184 PRINTS Ethylene responsive element binding protein signature 8 19 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
HCH4g0462 184 Gene3D AP2/ERF domain 6 65 IPR036955 GO:0003700(InterPro)|GO:0006355(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
HCH12g0399 HCH-Chr12:2281322 HCH4g0462 HCH-Chr4:2986000 2.40E-47 dispersed
HCH4g0462 HCH-Chr4:2986000 HCH4g1272 HCH-Chr4:8772694 2.80E-47 dispersed
HCH4g0461 HCH-Chr4:2981854 HCH4g0462 HCH-Chr4:2986000 2.10E-51 tandem
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
33428 PF00847 AP2 7.50E-12 CL0081 HCH TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
HCH4g0462 - - - 0.0