Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
HCH4g0472 ATGTCGGACGAGGAACATCACTTCGAAGCCAAGGCTGATGCCGGAGCTTCCAAAACATTCCCTCAACAAGCTGGAACCATTCGTAAGAATGGTTACATTGTCATCAAGGGCCGTCCTTGCAAGGTTGTTGAGGTGTCTACATCCAAGACTGGAAAGCACGGGCATGCTAAGTGTCATTTTGTGGCGATTGATATATTCAATGGCAAGAAAATTGAAGATATCGTCCCATCGTCTCACAATTGTGATGTTCCTGAGGTTACTCGCATTGATTATCAGCTTATTGACATATCTGAAGATGGATTTGTGAGCCTTTTGACTGACAATGGAAACACTAAGGATGATTTGAGGCTTCCTACTGATGAAAACTTACTTTCCCAGATTAAAGATGGTTTTGCTGAAGGAAAGGACCTTGTTGTGAGTGTCATGTCAGCCATGGGAGAGGAGCAAATTTGTGGCTTGAAGGATATTGGCCCCAAAAACTAA 483 43.27 MSDEEHHFEAKADAGASKTFPQQAGTIRKNGYIVIKGRPCKVVEVSTSKTGKHGHAKCHFVAIDIFNGKKIEDIVPSSHNCDVPEVTRIDYQLIDISEDGFVSLLTDNGNTKDDLRLPTDENLLSQIKDGFAEGKDLVVSVMSAMGEEQICGLKDIGPKN 160
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 3082338 3084397 + evm.model.ptg000015l.472 HCH4g0472 542716
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
HCH4g0472 160 MobiDBLite consensus disorder prediction 1 21 - -
HCH4g0472 160 PANTHER TRANSLATION INITIATION FACTOR 5A FAMILY MEMBER 1 157 IPR001884 GO:0003723(InterPro)|GO:0003746(InterPro)|GO:0003746(PANTHER)|GO:0006414(PANTHER)|GO:0043022(InterPro)|GO:0045901(InterPro)
HCH4g0472 160 SUPERFAMILY Nucleic acid-binding proteins 86 156 IPR012340 -
HCH4g0472 160 FunFam Eukaryotic translation initiation factor 5A 1 85 - -
HCH4g0472 160 Pfam Translation initiation factor 5A-like, N-terminal 17 79 IPR048670 -
HCH4g0472 160 FunFam Eukaryotic translation initiation factor 5A 86 158 - -
HCH4g0472 160 ProSitePatterns Eukaryotic initiation factor 5A hypusine signature. 50 57 IPR019769 GO:0003723(InterPro)|GO:0003746(InterPro)|GO:0043022(InterPro)|GO:0045901(InterPro)|GO:0045905(InterPro)
HCH4g0472 160 NCBIfam translation initiation factor IF-5A 18 152 IPR001884 GO:0003723(InterPro)|GO:0003746(InterPro)|GO:0043022(InterPro)|GO:0045901(InterPro)
HCH4g0472 160 SUPERFAMILY Translation proteins SH3-like domain 15 93 IPR008991 -
HCH4g0472 160 Gene3D - 86 159 IPR012340 -
HCH4g0472 160 SMART eIF_5a_2 85 154 IPR020189 GO:0003723(InterPro)|GO:0003746(InterPro)|GO:0043022(InterPro)|GO:0045901(InterPro)|GO:0045905(InterPro)
HCH4g0472 160 Gene3D - 1 85 IPR014722 -
HCH4g0472 160 Pfam Eukaryotic elongation factor 5A hypusine, DNA-binding OB fold 86 154 IPR020189 GO:0003723(InterPro)|GO:0003746(InterPro)|GO:0043022(InterPro)|GO:0045901(InterPro)|GO:0045905(InterPro)
HCH4g0472 160 PIRSF Transl_init_eIF5A 1 157 IPR001884 GO:0003723(InterPro)|GO:0003746(InterPro)|GO:0043022(InterPro)|GO:0045901(InterPro)
HCH4g0472 160 CDD S1_eIF5A 86 156 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
HCH4g0472 HCH-Chr4:3082338 HCH8g0931 HCH-Chr8:45622373 4.30E-81 dispersed
HCH12g0416 HCH-Chr12:2420416 HCH4g0472 HCH-Chr4:3082338 7.40E-81 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
HCH4g0472 K03263 - csv:101211156 316.62