Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
HCH4g0475 ATGGCTTGTTCTTCAACATCTTTAGCTCTCATCTTCTTCCTCTTCTTCAGCTTCTCAGAAGCTAGAGAGATCTTGGTTGGAGGAAAAACTAATGCTTGGAAAATCCCTTCTTCTCAATCTCAATCTCTAAACCAATGGGCCGAAAGCTCTCGCTTCCGCATCGGCGACACTCTTGTGTGGAATTACGAAGAAGGGAAAGACTCAGTATTGCAAGTAACAAAGGAAGATTATGAAGCCTGCAACATTAAAAATCCAGTACAAGAACATGATGATGGAGAGACAAAAGTGAAGCTGAACAAGGCAGGGCCATTCTACTTCATCAGTGGGGCAAAGGGTCATTGCGAGCAGGGCCAGAAGGTAGTTGTTGTGGTTATGTCTCCAAGACGCAGTTATGTTGGCATCTCTCCAGCACCTTCTCCAATGGAGTTTGAGGGCCCAGCTGTTGCTCCTAGTAGCAGTGCTGCAAGTTTGAAGGCTGGTTTAGTGGCTGTTTTGGCAATTTTGGGTCTTGGATTTTCTTTCATGTGA 528 45.08 MACSSTSLALIFFLFFSFSEAREILVGGKTNAWKIPSSQSQSLNQWAESSRFRIGDTLVWNYEEGKDSVLQVTKEDYEACNIKNPVQEHDDGETKVKLNKAGPFYFISGAKGHCEQGQKVVVVVMSPRRSYVGISPAPSPMEFEGPAVAPSSSAASLKAGLVAVLAILGLGFSFM 175
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 3107581 3108349 + evm.model.ptg000015l.475 HCH4g0475 542719
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
HCH4g0475 175 ProSiteProfiles Phytocyanin domain profile. 22 126 IPR003245 GO:0009055(InterPro)
HCH4g0475 175 SUPERFAMILY Cupredoxins 21 125 IPR008972 -
HCH4g0475 175 CDD OsENODL1_like 22 125 IPR041846 -
HCH4g0475 175 PANTHER BLUE COPPER PROTEIN 12 133 IPR039391 GO:0009055(InterPro)|GO:0046658(PANTHER)
HCH4g0475 175 FunFam Early nodulin-like protein 1 21 129 - -
HCH4g0475 175 Pfam Plastocyanin-like domain 33 118 IPR003245 GO:0009055(InterPro)
HCH4g0475 175 Gene3D - 20 129 IPR008972 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
HCH4g0475 HCH-Chr4:3107581 HCH4g1422 HCH-Chr4:10440631 4.20E-21 dispersed
HCH4g0475 HCH-Chr4:3107581 HCH12g1062 HCH-Chr12:7980148 3.30E-26 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
HCH4g0475 - - - 0.0