Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
HCH4g0488 ATGGCTTCGAAGTTCTGTGATTCTTGTAAATCAGCAACGGCAACTCTCTTCTGCCGTGCTGACTCAGCTTTTCTCTGTCTCGGCTGCGACTCCAAAGTCCACGCCGCCAATAAACTCGCTTCCCGCCACGCTCGCGTTTGGGTTTGTGAAGTTTGCGAACAAGCTCCCGCTCATGTCACGTGCAAGGCCGATGCCGCTGCTCTCTGCGTCACGTGCGACCGTGATATTCACTCCGCTAATCCCCTCGCTCGCCGACACGAACGTGTTCCGGTTGTCCCGTTTTACGACTCTGCCTCTAACTCCGTCAACTCACTCGCCGTTAAACCTGGCTCCGCCGCCGCCGCCGCCGTTATTAATTTTCTCGATGACCGTTACTTTTCCGATGTTGAAGGTGATGCTGACGTCATCAGTAGAGAAGAAGCGGAAGCTGCTTCCTGGCTACTTCCCAACCCTAACCCTAAGGTGATTGAAAGTCCGGATCTGAATTCTGGTAAGTTTGAGTTTCCGGAAATGGATCCGTATTTGGATCTGGATTATGGACATGTAGATCCGAAATTGGAAGCGCAAGAGCAGAATAGTTCTGGAACTGATGGAGTTGTTCCTGTTCAGAGTAAAGGCGTTCATCTTTCTACGGCGACGAACGATCGATGTTTCGGTATCGATTTCGCCGGAGCTAAATCGTTCGCTTATGGTTATAATCCCCAATCTATGAGTCATAGTGTTTCTTCATCGTCGATCGATGTCGGAGTAGTTCCAGACGGAAATGTGATGACGGAGATATCGAATCCTTACACGAAACCGGCGACTGAAACGACGGTGCAAACGCTTCCGATTTCACCGGCGGATCGAGAAGCGAGAGTGTTGAGGTACAGAGAGAAGAGGAAGAATCGAAAGTTCGAGAAGACGATCCGATACGCATCTCGGAAAGCGTACGCCGAAACGAGACCTAGAATCAAAGGCCGGTTCGCGAAACGGACCGATACCGAAATTGAAGTCGACGGCGACCGTGTGAGCGGATATGGCGTTGTTCCGTCGTTTTAA 1041 50.91 MASKFCDSCKSATATLFCRADSAFLCLGCDSKVHAANKLASRHARVWVCEVCEQAPAHVTCKADAAALCVTCDRDIHSANPLARRHERVPVVPFYDSASNSVNSLAVKPGSAAAAAVINFLDDRYFSDVEGDADVISREEAEAASWLLPNPNPKVIESPDLNSGKFEFPEMDPYLDLDYGHVDPKLEAQEQNSSGTDGVVPVQSKGVHLSTATNDRCFGIDFAGAKSFAYGYNPQSMSHSVSSSSIDVGVVPDGNVMTEISNPYTKPATETTVQTLPISPADREARVLRYREKRKNRKFEKTIRYASRKAYAETRPRIKGRFAKRTDTEIEVDGDRVSGYGVVPSF 346
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 3176046 3177181 - evm.model.ptg000015l.488 HCH4g0488 542732
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
HCH4g0488 346 ProSiteProfiles Zinc finger B-box type profile. 44 91 IPR000315 GO:0008270(InterPro)
HCH4g0488 346 ProSiteProfiles CCT domain profile. 283 325 IPR010402 GO:0005515(InterPro)
HCH4g0488 346 Pfam CCT motif 283 325 IPR010402 GO:0005515(InterPro)
HCH4g0488 346 Pfam B-box zinc finger 46 91 IPR000315 GO:0008270(InterPro)
HCH4g0488 346 Pfam B-box zinc finger 4 42 IPR000315 GO:0008270(InterPro)
HCH4g0488 346 CDD Bbox1_BBX-like 6 48 IPR049808 -
HCH4g0488 346 CDD Bbox1_BBX-like 48 91 IPR049808 -
HCH4g0488 346 ProSiteProfiles Zinc finger B-box type profile. 1 48 IPR000315 GO:0008270(InterPro)
HCH4g0488 346 PANTHER ZINC FINGER PROTEIN CONSTANS-LIKE 4 4 327 IPR045281 GO:0003700(PANTHER)|GO:0005634(PANTHER)|GO:0009909(InterPro)|GO:0009909(PANTHER)
HCH4g0488 346 SMART bboxneu5 1 48 IPR000315 GO:0008270(InterPro)
HCH4g0488 346 SMART bboxneu5 49 91 IPR000315 GO:0008270(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
HCH10g0276 HCH-Chr10:2280677 HCH4g0488 HCH-Chr4:3176046 4.40E-37 dispersed
HCH4g0488 HCH-Chr4:3176046 HCH9g0345 HCH-Chr9:2144707 8.30E-37 dispersed
HCH4g0488 HCH-Chr4:3176046 HCH8g1002 HCH-Chr8:46108337 6.50E-66 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
33432 PF00643 zf-B_box 3.90E-07 No_clan HCH TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
HCH4g0488 - - - 0.0