Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
HCH4g0488 ATGGCTTCGAAGTTCTGTGATTCTTGTAAATCAGCAACGGCAACTCTCTTCTGCCGTGCTGACTCAGCTTTTCTCTGTCTCGGCTGCGACTCCAAAGTCCACGCCGCCAATAAACTCGCTTCCCGCCACGCTCGCGTTTGGGTTTGTGAAGTTTGCGAACAAGCTCCCGCTCATGTCACGTGCAAGGCCGATGCCGCTGCTCTCTGCGTCACGTGCGACCGTGATATTCACTCCGCTAATCCCCTCGCTCGCCGACACGAACGTGTTCCGGTTGTCCCGTTTTACGACTCTGCCTCTAACTCCGTCAACTCACTCGCCGTTAAACCTGGCTCCGCCGCCGCCGCCGCCGTTATTAATTTTCTCGATGACCGTTACTTTTCCGATGTTGAAGGTGATGCTGACGTCATCAGTAGAGAAGAAGCGGAAGCTGCTTCCTGGCTACTTCCCAACCCTAACCCTAAGGTGATTGAAAGTCCGGATCTGAATTCTGGTAAGTTTGAGTTTCCGGAAATGGATCCGTATTTGGATCTGGATTATGGACATGTAGATCCGAAATTGGAAGCGCAAGAGCAGAATAGTTCTGGAACTGATGGAGTTGTTCCTGTTCAGAGTAAAGGCGTTCATCTTTCTACGGCGACGAACGATCGATGTTTCGGTATCGATTTCGCCGGAGCTAAATCGTTCGCTTATGGTTATAATCCCCAATCTATGAGTCATAGTGTTTCTTCATCGTCGATCGATGTCGGAGTAGTTCCAGACGGAAATGTGATGACGGAGATATCGAATCCTTACACGAAACCGGCGACTGAAACGACGGTGCAAACGCTTCCGATTTCACCGGCGGATCGAGAAGCGAGAGTGTTGAGGTACAGAGAGAAGAGGAAGAATCGAAAGTTCGAGAAGACGATCCGATACGCATCTCGGAAAGCGTACGCCGAAACGAGACCTAGAATCAAAGGCCGGTTCGCGAAACGGACCGATACCGAAATTGAAGTCGACGGCGACCGTGTGAGCGGATATGGCGTTGTTCCGTCGTTTTAA 1041 50.91 MASKFCDSCKSATATLFCRADSAFLCLGCDSKVHAANKLASRHARVWVCEVCEQAPAHVTCKADAAALCVTCDRDIHSANPLARRHERVPVVPFYDSASNSVNSLAVKPGSAAAAAVINFLDDRYFSDVEGDADVISREEAEAASWLLPNPNPKVIESPDLNSGKFEFPEMDPYLDLDYGHVDPKLEAQEQNSSGTDGVVPVQSKGVHLSTATNDRCFGIDFAGAKSFAYGYNPQSMSHSVSSSSIDVGVVPDGNVMTEISNPYTKPATETTVQTLPISPADREARVLRYREKRKNRKFEKTIRYASRKAYAETRPRIKGRFAKRTDTEIEVDGDRVSGYGVVPSF 346
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 3176046 3177181 - evm.model.ptg000015l.488 HCH4g0488 542732

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
HCH4g0488 346 ProSiteProfiles Zinc finger B-box type profile. 44 91 IPR000315 GO:0008270(InterPro)
HCH4g0488 346 ProSiteProfiles CCT domain profile. 283 325 IPR010402 GO:0005515(InterPro)
HCH4g0488 346 Pfam CCT motif 283 325 IPR010402 GO:0005515(InterPro)
HCH4g0488 346 Pfam B-box zinc finger 46 91 IPR000315 GO:0008270(InterPro)
HCH4g0488 346 Pfam B-box zinc finger 4 42 IPR000315 GO:0008270(InterPro)
HCH4g0488 346 CDD Bbox1_BBX-like 6 48 IPR049808 -
HCH4g0488 346 CDD Bbox1_BBX-like 48 91 IPR049808 -
HCH4g0488 346 ProSiteProfiles Zinc finger B-box type profile. 1 48 IPR000315 GO:0008270(InterPro)
HCH4g0488 346 PANTHER ZINC FINGER PROTEIN CONSTANS-LIKE 4 4 327 IPR045281 GO:0003700(PANTHER)|GO:0005634(PANTHER)|GO:0009909(InterPro)|GO:0009909(PANTHER)
HCH4g0488 346 SMART bboxneu5 1 48 IPR000315 GO:0008270(InterPro)
HCH4g0488 346 SMART bboxneu5 49 91 IPR000315 GO:0008270(InterPro)
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
HCH4g0488 - - - - 0.0
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
HCH10g0276 HCH-Chr10:2280677 HCH4g0488 HCH-Chr4:3176046 4.40E-37 dispersed
HCH4g0488 HCH-Chr4:3176046 HCH9g0345 HCH-Chr9:2144707 8.30E-37 dispersed
HCH4g0488 HCH-Chr4:3176046 HCH8g1002 HCH-Chr8:46108337 6.50E-66 transposed
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
HCH9g0345 . 19 366 C2C2-CO-like Transcription Factor Family AT5G15850 50.3 1.2e-57 220.7
HCH4g0488 . 1 346 C2C2-CO-like Transcription Factor Family AT5G24930 60.5 3.1e-82 302.4
HCH8g1002 . 20 370 C2C2-CO-like Transcription Factor Family AT5G24930 51.2 6.4e-56 214.9
HCH8g1002 . 1 370 C2C2-CO-like Transcription Factor Family AT5G57660 51.6 2.1e-67 253.1
HCH2g0643 . 1 413 C2C2-CO-like Transcription Factor Family AT3G07650 55.4 8.6e-88 320.9
HCH7g0361 . 1 415 C2C2-CO-like Transcription Factor Family AT3G07650 52.8 1.8e-82 303.1
HCH2g0643 . 1 413 C2C2-CO-like Transcription Factor Family AT5G48250 55.5 6.2e-86 314.7
HCH7g0361 . 1 415 C2C2-CO-like Transcription Factor Family AT5G48250 52.8 2.9e-83 305.8
HCH2g0643 . 1 413 C2C2-CO-like Transcription Factor Family AT5G48250 55.5 6.2e-86 314.7
HCH7g0361 . 1 415 C2C2-CO-like Transcription Factor Family AT5G48250 52.8 2.9e-83 305.8
HCH7g0529 . 1 204 C2C2-CO-like Transcription Factor Family AT1G75540 54.6 5.2e-52 201.8
HCH12g0156 . 1 214 C2C2-CO-like Transcription Factor Family AT1G75540 50.9 2.6e-51 199.5
HCH13g1365 . 1 183 C2C2-CO-like Transcription Factor Family AT2G21320 60.1 3.4e-55 211.5
HCH14g0629 . 1 184 C2C2-CO-like Transcription Factor Family AT2G21320 54.3 6.9e-48 187.2
HCH13g1365 . 1 184 C2C2-CO-like Transcription Factor Family AT4G38960 62.5 3.3e-56 214.9
HCH14g0629 . 1 183 C2C2-CO-like Transcription Factor Family AT4G38960 56.8 2.4e-51 198.7
HCH7g0529 . 1 201 C2C2-CO-like Transcription Factor Family AT4G39070 58.1 2.1e-55 212.6
HCH4g0768 . 1 210 C2C2-CO-like Transcription Factor Family AT4G39070 51.9 1.8e-46 183.0
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0010751 0 1 0 1 1 1 1 1 1 1 1 1 2 1 1 2 1 2 2 1 1 1 1 1 1 1 0 2 1 1 32
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
33432 PF00643 zf-B_box 3.90E-07 No_clan HCH TF