Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
HCH4g0490 | ATGGTGGCGATGGCGCAAAAGGAGAGGACCAGAGTGAAGGTTGGTGTGGTTCTGGATATGAATGGTAGTTTTGGGAAGATGAGTCAGAGTTGTATTTCAATGGCTCTCTCTGACTTTTATGCTTCTCATTCTCATTACAACACCAGACTCCTTCTTAACACCATTGACTCCAAAGCCACTGTTGTTGATGCAGCTGCTGCAGGTGTAGAATTGATAAAGAAAGAGGAAGTGCAAGCCATAATAGGTCCACAGAGCTCAATGCAAGCAAACTTCATGATTGAGATTGGAGACAAAGCTCATGTTCCCACCATCTCTTTTTCAGCAACAAGACCTTCTCTAACTTCACATAGAAGCTCTTTCTTCTTCAGAGTGGCTCAAAACGATTCTTCTCAAGTTAAAGCCATTGGAGACATCGTCAAAGCCTTCAGATGGCGACAAGTCGTCCCCATTTATGTCGACAATGAGTTCGGAGAAGGAATCATCCCTTACCTTATCGATGCTCTGGAAGACGTCGACGCCCGAGTTCCTTACCAGAGCCTCATCTCTCCCACAGCCACCGACGACCAAATGGCCGGCGAGCTTCGTAAGTTGATGACGATGCAAACCAGAGTTTTTATAGTTCATATGTTATCGAGTCTTGCCTCTCGACTCTTCACAATGGCCAAACAGATCGGAATGATGAAGAAAGGCTATGTTTGGATAATGACGGATGGTATCACAAACGAACTTGGTACGATAAAACCTGCAGTTTTGGAAACGATGGAAGGTGTTATAGGGATAAAAACGTATGTCCCAAGATCCAAAATGCTCGAATACTTTAAACTTCGATGGAAGAAGAGATTTCAAAAATACTATCCGACCATAGAAGAAATTCCAGAACTGAGTGTGTTTGGATTATGGGCTTACGATGCTGCATGGGCACTAGCCATTGCCATGGAACAGGCCGGAACCGACAACCTCAAATACGACACCACGAACATTACGGTCCTTAACGTTAACTCATCAAATTACCTTTACACCTTAGGCATCAATCAAAACGGTCAAAAACTTCTAGACGCCTTTTCGAATGTAACATTCAGGGGCCTGGCCGGTGAATTCAGTCTCATAAATGGTGAGTTACAATCGTCCCTTTTTCAGATAATAAATGTGATCGGAAATGGAGAAAGAAATATTGGGTTTTGGTCGCCGGAAATTGGGTTGACGAAGAGTCCGTTCAATTTGACGAAAACAAGATCAAAGTTGAGGAGGGTCATTTGGCCGCCGGGAGACTCAACTTCTGTACCCAAAGGGTGGGAGATTCCAACGAATGAAAAGAAGTTGAGAGTTGGGGTTCCGGTGAAGGATGGTTTTGTTGAATTTGTGAAAGTGGTTTTTGATTCAAATACAAACACCCACCAAGTGAGTGGATATTGCATAGATGTGTTCAAGGCTGTGATTGAAGCATTGCCTTACGCTGTTTCTTATGAATTCATTCCATTTGACAAAACTAATGGAGAGCCCGGTGGTAGCTACGATAACTTAACTTATCAAGTTTACCTTGGGAAGTTTGATGCTGTGGTTGGAGACGTAACAATCTTAGCGAACAGGTCTTCATACATAGACTACACATTGCCATTCACAGAATCAGGTGTTTCCATGGTTGTGCCTGTGCGAGCGACTAAGGAGACCAACGGATGGATTTTCTTCAAGCCTCTCGCTTTTACCCTGTGGATGACGACGGGCCTCTTCTTTATTGGCATCGCACTTGTTGTTTGGATTTTAGAACACAGAGTCAATGAAGACTTTCGTGGACCTTATTGGGATCAGATCGGCACCAGTTTGTGGTATTCTTTCTCCACCATGGTTTTTGCTCATCGGGAGGTTACAATCAACAACTTGACAAGGGTTGTGGTGGTGATATGGCTATTTGCCGTTCTAATCATTACACAGAGTTACACTGCAAGTTTGGCTTCACTTTTGACAGTTCAAGAATTGAAACCAACTGTAACTGATATAAGCCAACTTCTTGCAAATGAAGAGAATATTGGGTATCAGCAAGGTTCTTTCATCTATGGAATCTTGAAGTCGTTGAAATTCGATGACTCTAAACTCAAAACATATGGTTCTGCTGAAGAAATGGACGAGCTTTTCACTAAAGGAAGCATCAATGGTGGAATAGCAGCTGCAGTTGATGAAAACCCTTATATTAAGCTATTTATGGCTCAATATTGCTCTAAATATACCACCATTGAACCCACATATAAAGCCGATGGATTTGGCTTCGTTTTTCCAATGGGTTCGCCGCTTGTACCTGAAATCTCAAGAGCGATATTGAATGTAACAGAAGGAGATAGAATGAGAGAAATAGAAAACGCATGGTTCAGACAGGTTAAAAAGTGTTCATCTTCAGACACCGCTGAGTTGTCTTCTACCCGCCTGAGCATCGAAAATTTCTTGGGACTTTTTAAGCTAACTGGTTATGCTGCGCTAGGATCTTGCGTCGTTTATATTGGAACCTTTCTATTCAAAGAACGGAGGGTGTGGATGAATCAACATTCCCCGTTATGGAGGAGAATCTGTGACTTGTTTTGGAAATTCCTCCAGAGAGATTCCAGTGCCCAGTACCGACTGAGGAGGAGAACCGGTCGTGGATAG | 2634 | 42.98 | MVAMAQKERTRVKVGVVLDMNGSFGKMSQSCISMALSDFYASHSHYNTRLLLNTIDSKATVVDAAAAGVELIKKEEVQAIIGPQSSMQANFMIEIGDKAHVPTISFSATRPSLTSHRSSFFFRVAQNDSSQVKAIGDIVKAFRWRQVVPIYVDNEFGEGIIPYLIDALEDVDARVPYQSLISPTATDDQMAGELRKLMTMQTRVFIVHMLSSLASRLFTMAKQIGMMKKGYVWIMTDGITNELGTIKPAVLETMEGVIGIKTYVPRSKMLEYFKLRWKKRFQKYYPTIEEIPELSVFGLWAYDAAWALAIAMEQAGTDNLKYDTTNITVLNVNSSNYLYTLGINQNGQKLLDAFSNVTFRGLAGEFSLINGELQSSLFQIINVIGNGERNIGFWSPEIGLTKSPFNLTKTRSKLRRVIWPPGDSTSVPKGWEIPTNEKKLRVGVPVKDGFVEFVKVVFDSNTNTHQVSGYCIDVFKAVIEALPYAVSYEFIPFDKTNGEPGGSYDNLTYQVYLGKFDAVVGDVTILANRSSYIDYTLPFTESGVSMVVPVRATKETNGWIFFKPLAFTLWMTTGLFFIGIALVVWILEHRVNEDFRGPYWDQIGTSLWYSFSTMVFAHREVTINNLTRVVVVIWLFAVLIITQSYTASLASLLTVQELKPTVTDISQLLANEENIGYQQGSFIYGILKSLKFDDSKLKTYGSAEEMDELFTKGSINGGIAAAVDENPYIKLFMAQYCSKYTTIEPTYKADGFGFVFPMGSPLVPEISRAILNVTEGDRMREIENAWFRQVKKCSSSDTAELSSTRLSIENFLGLFKLTGYAALGSCVVYIGTFLFKERRVWMNQHSPLWRRICDLFWKFLQRDSSAQYRLRRRTGRG | 877 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
4 | 3189587 | 3193299 | - | evm.model.ptg000015l.490 | HCH4g0490 | 542734 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
HCH4g0490 | 877 | Gene3D | - | 129 | 295 | - | - | |
HCH4g0490 | 877 | FunFam | Glutamate receptor | 558 | 688 | - | - | |
HCH4g0490 | 877 | Gene3D | - | 558 | 685 | - | - | |
HCH4g0490 | 877 | SMART | GluR_14 | 439 | 789 | IPR001320 | GO:0015276(InterPro)|GO:0016020(InterPro) | |
HCH4g0490 | 877 | Pfam | Ligand-gated ion channel | 568 | 820 | IPR001320 | GO:0015276(InterPro)|GO:0016020(InterPro) | |
HCH4g0490 | 877 | CDD | GluR_Plant | 438 | 787 | - | - | |
HCH4g0490 | 877 | Pfam | Receptor family ligand binding region | 30 | 385 | IPR001828 | - | |
HCH4g0490 | 877 | PANTHER | IONOTROPIC GLUTAMATE RECEPTOR | 12 | 851 | IPR015683 | GO:0005886(PANTHER)|GO:0015276(PANTHER)|GO:0038023(PANTHER) | |
HCH4g0490 | 877 | FunFam | Glutamate receptor | 133 | 291 | - | - | |
HCH4g0490 | 877 | Gene3D | - | 686 | 795 | - | - | |
HCH4g0490 | 877 | PIRSF | IGluLR_plant | 1 | 875 | IPR017103 | - | |
HCH4g0490 | 877 | SUPERFAMILY | Periplasmic binding protein-like I | 10 | 402 | IPR028082 | - | |
HCH4g0490 | 877 | FunFam | Glutamate receptor | 439 | 558 | - | - | |
HCH4g0490 | 877 | CDD | PBP1_GABAb_receptor_plant | 13 | 404 | IPR044440 | - | |
HCH4g0490 | 877 | Pfam | Ligated ion channel L-glutamate- and glycine-binding site | 460 | 549 | IPR019594 | GO:0015276(InterPro)|GO:0016020(InterPro) | |
HCH4g0490 | 877 | SUPERFAMILY | Periplasmic binding protein-like II | 421 | 788 | - | - | |
HCH4g0490 | 877 | FunFam | Glutamate receptor 2.7 | 695 | 795 | - | - | |
HCH4g0490 | 877 | Gene3D | - | 439 | 557 | - | - | |
HCH4g0490 | 877 | Gene3D | - | 325 | 438 | - | - |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
HCH4g0490 | HCH-Chr4:3189587 | HCH4g0495 | HCH-Chr4:3216944 | 0.00E+00 | dispersed | |
HCH4g0490 | HCH-Chr4:3189587 | HCH4g0493 | HCH-Chr4:3205334 | 3.00E-224 | proximal |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
HCH4g0490 | K05387 | - | csv:101203794 | 1167.53 |