Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
HCH4g0490 ATGGTGGCGATGGCGCAAAAGGAGAGGACCAGAGTGAAGGTTGGTGTGGTTCTGGATATGAATGGTAGTTTTGGGAAGATGAGTCAGAGTTGTATTTCAATGGCTCTCTCTGACTTTTATGCTTCTCATTCTCATTACAACACCAGACTCCTTCTTAACACCATTGACTCCAAAGCCACTGTTGTTGATGCAGCTGCTGCAGGTGTAGAATTGATAAAGAAAGAGGAAGTGCAAGCCATAATAGGTCCACAGAGCTCAATGCAAGCAAACTTCATGATTGAGATTGGAGACAAAGCTCATGTTCCCACCATCTCTTTTTCAGCAACAAGACCTTCTCTAACTTCACATAGAAGCTCTTTCTTCTTCAGAGTGGCTCAAAACGATTCTTCTCAAGTTAAAGCCATTGGAGACATCGTCAAAGCCTTCAGATGGCGACAAGTCGTCCCCATTTATGTCGACAATGAGTTCGGAGAAGGAATCATCCCTTACCTTATCGATGCTCTGGAAGACGTCGACGCCCGAGTTCCTTACCAGAGCCTCATCTCTCCCACAGCCACCGACGACCAAATGGCCGGCGAGCTTCGTAAGTTGATGACGATGCAAACCAGAGTTTTTATAGTTCATATGTTATCGAGTCTTGCCTCTCGACTCTTCACAATGGCCAAACAGATCGGAATGATGAAGAAAGGCTATGTTTGGATAATGACGGATGGTATCACAAACGAACTTGGTACGATAAAACCTGCAGTTTTGGAAACGATGGAAGGTGTTATAGGGATAAAAACGTATGTCCCAAGATCCAAAATGCTCGAATACTTTAAACTTCGATGGAAGAAGAGATTTCAAAAATACTATCCGACCATAGAAGAAATTCCAGAACTGAGTGTGTTTGGATTATGGGCTTACGATGCTGCATGGGCACTAGCCATTGCCATGGAACAGGCCGGAACCGACAACCTCAAATACGACACCACGAACATTACGGTCCTTAACGTTAACTCATCAAATTACCTTTACACCTTAGGCATCAATCAAAACGGTCAAAAACTTCTAGACGCCTTTTCGAATGTAACATTCAGGGGCCTGGCCGGTGAATTCAGTCTCATAAATGGTGAGTTACAATCGTCCCTTTTTCAGATAATAAATGTGATCGGAAATGGAGAAAGAAATATTGGGTTTTGGTCGCCGGAAATTGGGTTGACGAAGAGTCCGTTCAATTTGACGAAAACAAGATCAAAGTTGAGGAGGGTCATTTGGCCGCCGGGAGACTCAACTTCTGTACCCAAAGGGTGGGAGATTCCAACGAATGAAAAGAAGTTGAGAGTTGGGGTTCCGGTGAAGGATGGTTTTGTTGAATTTGTGAAAGTGGTTTTTGATTCAAATACAAACACCCACCAAGTGAGTGGATATTGCATAGATGTGTTCAAGGCTGTGATTGAAGCATTGCCTTACGCTGTTTCTTATGAATTCATTCCATTTGACAAAACTAATGGAGAGCCCGGTGGTAGCTACGATAACTTAACTTATCAAGTTTACCTTGGGAAGTTTGATGCTGTGGTTGGAGACGTAACAATCTTAGCGAACAGGTCTTCATACATAGACTACACATTGCCATTCACAGAATCAGGTGTTTCCATGGTTGTGCCTGTGCGAGCGACTAAGGAGACCAACGGATGGATTTTCTTCAAGCCTCTCGCTTTTACCCTGTGGATGACGACGGGCCTCTTCTTTATTGGCATCGCACTTGTTGTTTGGATTTTAGAACACAGAGTCAATGAAGACTTTCGTGGACCTTATTGGGATCAGATCGGCACCAGTTTGTGGTATTCTTTCTCCACCATGGTTTTTGCTCATCGGGAGGTTACAATCAACAACTTGACAAGGGTTGTGGTGGTGATATGGCTATTTGCCGTTCTAATCATTACACAGAGTTACACTGCAAGTTTGGCTTCACTTTTGACAGTTCAAGAATTGAAACCAACTGTAACTGATATAAGCCAACTTCTTGCAAATGAAGAGAATATTGGGTATCAGCAAGGTTCTTTCATCTATGGAATCTTGAAGTCGTTGAAATTCGATGACTCTAAACTCAAAACATATGGTTCTGCTGAAGAAATGGACGAGCTTTTCACTAAAGGAAGCATCAATGGTGGAATAGCAGCTGCAGTTGATGAAAACCCTTATATTAAGCTATTTATGGCTCAATATTGCTCTAAATATACCACCATTGAACCCACATATAAAGCCGATGGATTTGGCTTCGTTTTTCCAATGGGTTCGCCGCTTGTACCTGAAATCTCAAGAGCGATATTGAATGTAACAGAAGGAGATAGAATGAGAGAAATAGAAAACGCATGGTTCAGACAGGTTAAAAAGTGTTCATCTTCAGACACCGCTGAGTTGTCTTCTACCCGCCTGAGCATCGAAAATTTCTTGGGACTTTTTAAGCTAACTGGTTATGCTGCGCTAGGATCTTGCGTCGTTTATATTGGAACCTTTCTATTCAAAGAACGGAGGGTGTGGATGAATCAACATTCCCCGTTATGGAGGAGAATCTGTGACTTGTTTTGGAAATTCCTCCAGAGAGATTCCAGTGCCCAGTACCGACTGAGGAGGAGAACCGGTCGTGGATAG 2634 42.98 MVAMAQKERTRVKVGVVLDMNGSFGKMSQSCISMALSDFYASHSHYNTRLLLNTIDSKATVVDAAAAGVELIKKEEVQAIIGPQSSMQANFMIEIGDKAHVPTISFSATRPSLTSHRSSFFFRVAQNDSSQVKAIGDIVKAFRWRQVVPIYVDNEFGEGIIPYLIDALEDVDARVPYQSLISPTATDDQMAGELRKLMTMQTRVFIVHMLSSLASRLFTMAKQIGMMKKGYVWIMTDGITNELGTIKPAVLETMEGVIGIKTYVPRSKMLEYFKLRWKKRFQKYYPTIEEIPELSVFGLWAYDAAWALAIAMEQAGTDNLKYDTTNITVLNVNSSNYLYTLGINQNGQKLLDAFSNVTFRGLAGEFSLINGELQSSLFQIINVIGNGERNIGFWSPEIGLTKSPFNLTKTRSKLRRVIWPPGDSTSVPKGWEIPTNEKKLRVGVPVKDGFVEFVKVVFDSNTNTHQVSGYCIDVFKAVIEALPYAVSYEFIPFDKTNGEPGGSYDNLTYQVYLGKFDAVVGDVTILANRSSYIDYTLPFTESGVSMVVPVRATKETNGWIFFKPLAFTLWMTTGLFFIGIALVVWILEHRVNEDFRGPYWDQIGTSLWYSFSTMVFAHREVTINNLTRVVVVIWLFAVLIITQSYTASLASLLTVQELKPTVTDISQLLANEENIGYQQGSFIYGILKSLKFDDSKLKTYGSAEEMDELFTKGSINGGIAAAVDENPYIKLFMAQYCSKYTTIEPTYKADGFGFVFPMGSPLVPEISRAILNVTEGDRMREIENAWFRQVKKCSSSDTAELSSTRLSIENFLGLFKLTGYAALGSCVVYIGTFLFKERRVWMNQHSPLWRRICDLFWKFLQRDSSAQYRLRRRTGRG 877
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 3189587 3193299 - evm.model.ptg000015l.490 HCH4g0490 542734
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
HCH4g0490 877 Gene3D - 129 295 - -
HCH4g0490 877 FunFam Glutamate receptor 558 688 - -
HCH4g0490 877 Gene3D - 558 685 - -
HCH4g0490 877 SMART GluR_14 439 789 IPR001320 GO:0015276(InterPro)|GO:0016020(InterPro)
HCH4g0490 877 Pfam Ligand-gated ion channel 568 820 IPR001320 GO:0015276(InterPro)|GO:0016020(InterPro)
HCH4g0490 877 CDD GluR_Plant 438 787 - -
HCH4g0490 877 Pfam Receptor family ligand binding region 30 385 IPR001828 -
HCH4g0490 877 PANTHER IONOTROPIC GLUTAMATE RECEPTOR 12 851 IPR015683 GO:0005886(PANTHER)|GO:0015276(PANTHER)|GO:0038023(PANTHER)
HCH4g0490 877 FunFam Glutamate receptor 133 291 - -
HCH4g0490 877 Gene3D - 686 795 - -
HCH4g0490 877 PIRSF IGluLR_plant 1 875 IPR017103 -
HCH4g0490 877 SUPERFAMILY Periplasmic binding protein-like I 10 402 IPR028082 -
HCH4g0490 877 FunFam Glutamate receptor 439 558 - -
HCH4g0490 877 CDD PBP1_GABAb_receptor_plant 13 404 IPR044440 -
HCH4g0490 877 Pfam Ligated ion channel L-glutamate- and glycine-binding site 460 549 IPR019594 GO:0015276(InterPro)|GO:0016020(InterPro)
HCH4g0490 877 SUPERFAMILY Periplasmic binding protein-like II 421 788 - -
HCH4g0490 877 FunFam Glutamate receptor 2.7 695 795 - -
HCH4g0490 877 Gene3D - 439 557 - -
HCH4g0490 877 Gene3D - 325 438 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
HCH4g0490 HCH-Chr4:3189587 HCH4g0495 HCH-Chr4:3216944 0.00E+00 dispersed
HCH4g0490 HCH-Chr4:3189587 HCH4g0493 HCH-Chr4:3205334 3.00E-224 proximal
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
HCH4g0490 K05387 - csv:101203794 1167.53