Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
HCH4g0495 ATGATGATATTGGTTATGGGCAACGTAGAGAAGAAGGAAACGATGAAAAAAGTGAAAGTGGGAGTGGGAGTGGTTCTTGATTTGAAAAGTCCGATTGGGGAGAGGGGTTTGAGTTGTATAAAAATGTCTCTCTCTGACTTTTATGCTTCTCATCCTCATTACAACACCAGAATTCTCCCTCACATAAGAGATTCCAATGGTGATGTTGTCGAAGCCGCCGCTCAAGCTGTAGAATTGATAGAGAAAGAGGAAGTGCAAGCCATGATAGGTCCACAGAGCTCAATGCAAGCAAACTTCATGATTGAGATTGAAGATAAAGCTCAGGTTCCCACCATCTCTTTTTCAGCCACAAGACCTTCTTTAACCTCACATAGAAGCTCCTTCTTCTTCAGAGTTACACAGAATGATTCTTCTCAAGTTAAAGCCATTGGAGCCATTGTCAGAAGCTTTAGATGGCGACAAGTCGTCCCCATTTATGTCGACAATGAGTTCGGAGAAGGAATCATACCTTACCTTGTCGATGCTCTACAAGACGTCGATGCCCGAGTCCCTTACCAGAGCCTCATCTCTCCCAAAGCCACCGACGATCAAATTTCCGGCGAGCTTTTTAAGTTGATGACGATGCAGACTCGGGTTTTTGTTGTCCACATGTTACCGGATCTTGCTTCACGACTCTTCTTAAAGGCCAAAGAGATTGGAATGATGAACGAAGGCTATGTTTGGATAATGACAGATGGTGTCACAAACGAACTGGATTCAATAAACCCATCGATGGAAGGAGTTTTAGGGATAAAAACTTATGTCCCGACATCCAAAAAGCTCGAATCCTTCAAACTTCGATGGATGGTGAGATTTCGAAAGTATTATCCGACCATGAAAGACATTCCTCAACTTAACGTGTTTGGATTATGGGCTTACGATGCTGCTTGGGCACTTGCCATGGCCGTCGAACATGCCGGAACCGACAACCTCAAATACGACACCACAAACATTAATTCCCCCAATTATCTTCACAGCTTCGGCGTCAATCGAAACGGTAAGAGACTGCGAGACGCCTTGTCGAATGTCACATTCAGGGGACTGGCCGGCGACTTCAATCTCAAAAACGGCCAGTTACAATCTTCCCTTTTTGAGATAATAAATGTGATCGGAAATGAAGAAAGAAATGTGGGGTTTTGGTCGCCGGAAACTGGGTTGACGAAGGAACTGAGAAATTCTAGCAGTTCAAAGAGTGATCTGAGGGAGATCATATGGCCGGGAAATTCGAGTTCGGTGCCGAAAGGGTGGGAGATTCCGATGAATGAAAAGAAGTTGAAAGTTGGGGTTCCGATGGATAGTTTTGATGAATTTGTAAAAGTGGTTTTTGATTCTAACAACGAAACCTATAAAGTAAGTGGATATTGCATAGACGTGTTCGCGGCTGTGATTGAAGCATTGCCTTACGCTGTTCCTTATGAATTCATTCCATTTCACAAAGACAATGGAAGCTTTGATGACTTGACTTATCAAGTCTTCCTCGGGAACTTCGATGCTGTTGTGGGGGACATAACAATCGTAGCGAACAGATCTTTATACATAGACTACACATTGCCATTCGCAGAATCAGGTGTTTCCATGGTTGTTCCCGTGAGACAGACCAAGAATACCAATGCATGGGTTTTTTTGAAGCCTCTCGCTTTAAACCTGTGGGTGACGACATGCATCTTCTTTGTCATCGTGGCATTTGTTGTTTGGATTCTAGAACACAGAGTCAATGAAGACTTTCGTGGGCCTGTTTTGGATCAGATTGGCACCAGTTTGTGGTACTCTTTCTCCACCATGGTTTTTGCTCATCGGGAGGTTACATTCAACAACTGGACAAGGCTTGTGGTGATAATATGGCTATTTGTGGTTCTTATCATTTCACAAAGTTACACCGCAAGTTTGGCTTCACTTTTGACGGTTCAAGAACTGAATCCAACAGTAACTGATATCAATCAACTTCTTGCAAATGAAGATAATATTGGGTATCAAGAAGGTTCTTTTGTCCATGGAATCTTGAAGTCTTTGAAATTTGATGACTCTAAACTCATAACGTATGATTCTGTTGAAGAAATGAACGATCTTTTCACTAAAGGAAGCATCAGTGGTGGAATTGCAGCTGCAGTTGATGAAATCCCTTACATTAAGCTATTTATGTCTAGATATTGCTCTAAATATACCACCACTGAACCCACCTTTAAAGCAGATGGCTTTGGCTTCGTTTTTCCAATGGGTTCGCCGCTGGTACAGGATATTTCAAGAGCAATCTTGAATGTAACACAAGGAGATAAAATGAGAGAGATTGAAAACAAATGGTTCGGAAAGTTTAAAAAGTGTTCATCTTCAGACACCCCCGATTTTTCTTCATCACCCCTGAGCATCGACAGTTTCTGGGGACTTTTTCTCATCACTGGGATTGTTTCACTCTTTTCCTGCATCGTTTACATTTCCAAATTTCTCTACAACCAACGTCGATTGTGGCTGAATTCTAATTCTCCGGTGCGGCGGAGATTCTCGGACTTGGTATCGGAATTCATTGAGAGAGACGCCAGCGCTCAAGGGATAAGGAGAAGAACCCCCATTAATAGCAGTCATGTTCATCCAGAGGACCAGAACCAGATGGATCAAATCTGTTAA 2658 42.66 MMILVMGNVEKKETMKKVKVGVGVVLDLKSPIGERGLSCIKMSLSDFYASHPHYNTRILPHIRDSNGDVVEAAAQAVELIEKEEVQAMIGPQSSMQANFMIEIEDKAQVPTISFSATRPSLTSHRSSFFFRVTQNDSSQVKAIGAIVRSFRWRQVVPIYVDNEFGEGIIPYLVDALQDVDARVPYQSLISPKATDDQISGELFKLMTMQTRVFVVHMLPDLASRLFLKAKEIGMMNEGYVWIMTDGVTNELDSINPSMEGVLGIKTYVPTSKKLESFKLRWMVRFRKYYPTMKDIPQLNVFGLWAYDAAWALAMAVEHAGTDNLKYDTTNINSPNYLHSFGVNRNGKRLRDALSNVTFRGLAGDFNLKNGQLQSSLFEIINVIGNEERNVGFWSPETGLTKELRNSSSSKSDLREIIWPGNSSSVPKGWEIPMNEKKLKVGVPMDSFDEFVKVVFDSNNETYKVSGYCIDVFAAVIEALPYAVPYEFIPFHKDNGSFDDLTYQVFLGNFDAVVGDITIVANRSLYIDYTLPFAESGVSMVVPVRQTKNTNAWVFLKPLALNLWVTTCIFFVIVAFVVWILEHRVNEDFRGPVLDQIGTSLWYSFSTMVFAHREVTFNNWTRLVVIIWLFVVLIISQSYTASLASLLTVQELNPTVTDINQLLANEDNIGYQEGSFVHGILKSLKFDDSKLITYDSVEEMNDLFTKGSISGGIAAAVDEIPYIKLFMSRYCSKYTTTEPTFKADGFGFVFPMGSPLVQDISRAILNVTQGDKMREIENKWFGKFKKCSSSDTPDFSSSPLSIDSFWGLFLITGIVSLFSCIVYISKFLYNQRRLWLNSNSPVRRRFSDLVSEFIERDASAQGIRRRTPINSSHVHPEDQNQMDQIC 885
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 3216944 3222012 + evm.model.ptg000015l.495 HCH4g0495 542739
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
HCH4g0495 885 FunFam Glutamate receptor 141 295 - -
HCH4g0495 885 FunFam Glutamate receptor 342 436 - -
HCH4g0495 885 CDD GluR_Plant 436 780 - -
HCH4g0495 885 MobiDBLite consensus disorder prediction 864 885 - -
HCH4g0495 885 Pfam Ligand-gated ion channel 783 813 IPR001320 GO:0015276(InterPro)|GO:0016020(InterPro)
HCH4g0495 885 PIRSF IGluLR_plant 1 884 IPR017103 -
HCH4g0495 885 FunFam Glutamate receptor 2.7 688 788 - -
HCH4g0495 885 Pfam Receptor family ligand binding region 38 384 IPR001828 -
HCH4g0495 885 Gene3D - 137 300 - -
HCH4g0495 885 Gene3D - 686 788 - -
HCH4g0495 885 PANTHER IONOTROPIC GLUTAMATE RECEPTOR 21 852 IPR015683 GO:0005886(PANTHER)|GO:0015276(PANTHER)|GO:0038023(PANTHER)
HCH4g0495 885 Gene3D - 344 441 - -
HCH4g0495 885 SMART GluR_14 437 782 IPR001320 GO:0015276(InterPro)|GO:0016020(InterPro)
HCH4g0495 885 FunFam Glutamate receptor 437 551 - -
HCH4g0495 885 Gene3D - 443 551 - -
HCH4g0495 885 FunFam Glutamate receptor 551 681 - -
HCH4g0495 885 Pfam Bacterial extracellular solute-binding proteins, family 3 458 559 IPR001638 -
HCH4g0495 885 CDD PBP1_GABAb_receptor_plant 26 403 IPR044440 -
HCH4g0495 885 Gene3D - 552 679 - -
HCH4g0495 885 SUPERFAMILY Periplasmic binding protein-like II 416 782 - -
HCH4g0495 885 SUPERFAMILY Periplasmic binding protein-like I 21 430 IPR028082 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
HCH4g0490 HCH-Chr4:3189587 HCH4g0495 HCH-Chr4:3216944 0.00E+00 dispersed
HCH4g0495 HCH-Chr4:3216944 HCH6g0120 HCH-Chr6:1510322 1.50E-215 dispersed
HCH4g0493 HCH-Chr4:3205334 HCH4g0495 HCH-Chr4:3216944 4.40E-232 proximal
HCH4g0495 HCH-Chr4:3216944 HCH4g0496 HCH-Chr4:3227654 9.90E-268 tandem
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
HCH4g0495 K05387 - csv:101203794 1120.53