Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
HCH4g0496 ATGGTAGATAATATGAAACAACCCAATTATCCTTTTCTTGTTTTTTATCTCTTTAGTGGTTGTGTTTTGATCCTTGCTACAATAGCTTTCGGAAAAAACACAACGACCGCCGTGTCGTTTCCGGTGCCGGTGAACGTCGGCGTGGTAATGGATATGAGTAGCTGGGTTGGGAAGATGGGGCTGAGTTGCATCAACATGTCGTTGTCGGATTTCTATGATTCACATCCTCATTACAACACTAGAATCGTTCTTCATCCCAGAGACTCTATGAATGATGTTATTGGAGCTGCTGCCGCAGCTCTTGACCTGATAAAGAACAACAAAGTCCAAGCAATCATTGGACCAAAAACTTCCATGCAAGCAAATTTCATCATCGAGCTCGGAGAAAAATCCCACGTCCCTATCATCACCTTCACTGCAACAAGCCCTACCCTCACTTCCCTCCGAAGCCCATACTTCTTCCGAGTCGCTCAAAACGATTCGTCTCAAGTCTCCGCCATTAGCGCCATCGTCAAACATTTCGGCTGGCGACACGTCGTGCCCATTTACGAAGACGACGAGTTCGGAGAAGGAATTTTACCTTACTTGATCGACGCATTACAAGACGTCAATGCTCAAGTCCCTTACCGGAGCGTCATCAATCCGTCGGCATCCGGTGACCAAATCGGAGAAGAACTTTACAAGTTAATGACAATGCAAACTAGGGTTTTCGTCGTTCACATGAATCACGATCTCTCATCTAAGGTTTTTAAAAAAGCGAAAGAAATTGGAATGATGAGTGAAGGGTATGTTTGGATTTTAACTGACGCCACGTCAAATTTATTAGAATCAATGGATTCTTCGATTTTGAATTCCATGCAAGGAGCTTTGGGAATCAAGACTTATGTTCCGAGATCAAATGAGCTAAAGAGTTTCAAAACCAGATGGATAAGGAAACTCCTACAGGACAACGTTGTACTCAACGAACCTCAATTAGATGTTTTTGGATTATGGGCTTATGATGCTGCTTCAGCTTTAGCTATAGCAATTGAAAAAACTGGAGCTTTAAATTTCACTTCTCGAAATTTCACAAACCCTTTAAACGACGTGACCGTGACAGATCTTCAAGCTCTTGGGGTTTCTGAAAATGGACAAAAAATTCGAGATTCCTTATCGGAAACGAAATTCAAAGGGCTTAGTGGAGAATTCAGCCTGGTCAACGGGCAATTAAAGTCAACGAATTTTCAGATTGTGAATGTGAATAGTAATGGAGGAAATGTTGTGGGATTATGGACGCCGGAAAATGGGACGGTGGAATTGAAATCTATAATTTGGCCCGGAGATTCGACGATGGTTCCGAGAGGATGGGAGATTCCGACGAACGGAAAAATACTGAGAATTGGAGTTCCGGTGAAAAATGGGTATAGCGAGTTTGTTAAAGTTAACAAGAATGGCTCCGTGGAAGGATATTGCATTGACGTGTTCAATAAAGTGGTGGAGGCGCTTCCGTACGCTCTTCCTCATGAATTTATTCCTTTTGCGTTACCAAATGGATCGAGTGCTGGTTCTTACGATGACCTCGTTTACCAAATATTCGATGGGAAAGTGGATGCTGTAGTAGGAGATGTGACGATCGTATCAAACAGATCTTTATACGTGGACTTCAGTTTACCGTTTACAGAATCAGGAGTTTCCATGGTGGTTCCAATTAAAAACAATTCAAAGAACAACGCCTGGGTTTTCCTCAAGCCATTGACATTAGACCTCTGGGTTACAAGCTTCTGCTTTTTCGTTTTCATGGGTTTCGTCGTCTGGGTTCTCGAGCACCGGATCAATGAAGATTTTCGTGGCCCACCATCTCACCAAATCGGCACAAGTCTCTGGTTCTCTTTCTGCACCATGGTTTTCGCTCAAAGGGAGACATTGGTGAGCAATTTGGCAAGGTTTGTGGTAGTGATATGGTTCTTTGTGGTGCTGATTCTGACACAAAGTTATACAGCAAGTTTGACTTCTCTTCTTACAGTTCAACAACTGCAACCGACAGTTACAGATGTGAATCTGATCATAAAGAACAAAATGTCTGTCGGTTTCCAAGAGGGTTCGTTTGTTTACGGGCTGTTGAAGAATTTTGGAATTCAAAATCTCAAGTCTTTTGAATCTCCTGAGGAACTGGATGAACTATTCAGACGAGGAATCATTGATGCTGCTTTTGATGAAATCCCTTATATTAAACTCTTTTTTTCCAAGTTTCCTAATAAGTATACCATGACTGATCCCAACTACAAAACTGATGGTTTTGGATTTGCATTTCCCAAAGGCTCGCCACTGGTGGGTGATATTTCAAGGGCAGTATTAAACGTGACAGAAAGTTATGAAGTAGTGAAACGAATTGAAAAGGAATGGTTTGGTGATCAAAACAACTCACCATCTTCAAGCTCCGAGGTCAATTTTTCAAGGCTCAATCTCAGCAGTTTCTGGGGCCTTTTCCTCATCGCCGGTTCCGCCGCCGTCTTATCTCTCATCCTTTACTTCATCATCTTCTTATACAAAGAGAAACACTCCCTCAACGGCGTTCAATCCCACGCCTCCATTTGGAAGAAACTCGGTGTTCTTCTCAAAATCTACGATGCCAAAGATCTGACTTCCCATACTTTTCGAAAGTCTCCTCTTTCCGGCCTCCCCGTCGAGGCCTCGCCGGCACCCAGCACGAATTACCCACTGAGTCCGTCGATGGATTCGGTTCAGGATCAGAGCTTTGAATTTTCCAATGATTTTGGCGACTTGAGCCCCGAAAATCGAGGTTCGTCACCGGAGATGGTGAATGATACGGTGATTGAGCTCGATCACCGGAACCGAGAGGGAGAGGTAAGAAATGGAGAAGAAATAATCCAAGTGATTGTGAAAAATTAA 2889 43.13 MVDNMKQPNYPFLVFYLFSGCVLILATIAFGKNTTTAVSFPVPVNVGVVMDMSSWVGKMGLSCINMSLSDFYDSHPHYNTRIVLHPRDSMNDVIGAAAAALDLIKNNKVQAIIGPKTSMQANFIIELGEKSHVPIITFTATSPTLTSLRSPYFFRVAQNDSSQVSAISAIVKHFGWRHVVPIYEDDEFGEGILPYLIDALQDVNAQVPYRSVINPSASGDQIGEELYKLMTMQTRVFVVHMNHDLSSKVFKKAKEIGMMSEGYVWILTDATSNLLESMDSSILNSMQGALGIKTYVPRSNELKSFKTRWIRKLLQDNVVLNEPQLDVFGLWAYDAASALAIAIEKTGALNFTSRNFTNPLNDVTVTDLQALGVSENGQKIRDSLSETKFKGLSGEFSLVNGQLKSTNFQIVNVNSNGGNVVGLWTPENGTVELKSIIWPGDSTMVPRGWEIPTNGKILRIGVPVKNGYSEFVKVNKNGSVEGYCIDVFNKVVEALPYALPHEFIPFALPNGSSAGSYDDLVYQIFDGKVDAVVGDVTIVSNRSLYVDFSLPFTESGVSMVVPIKNNSKNNAWVFLKPLTLDLWVTSFCFFVFMGFVVWVLEHRINEDFRGPPSHQIGTSLWFSFCTMVFAQRETLVSNLARFVVVIWFFVVLILTQSYTASLTSLLTVQQLQPTVTDVNLIIKNKMSVGFQEGSFVYGLLKNFGIQNLKSFESPEELDELFRRGIIDAAFDEIPYIKLFFSKFPNKYTMTDPNYKTDGFGFAFPKGSPLVGDISRAVLNVTESYEVVKRIEKEWFGDQNNSPSSSSEVNFSRLNLSSFWGLFLIAGSAAVLSLILYFIIFLYKEKHSLNGVQSHASIWKKLGVLLKIYDAKDLTSHTFRKSPLSGLPVEASPAPSTNYPLSPSMDSVQDQSFEFSNDFGDLSPENRGSSPEMVNDTVIELDHRNREGEVRNGEEIIQVIVKN 962
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 3227654 3232557 + evm.model.ptg000015l.496 HCH4g0496 542740
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
HCH4g0496 962 Gene3D - 743 802 - -
HCH4g0496 962 Pfam Receptor family ligand binding region 63 415 IPR001828 -
HCH4g0496 962 Gene3D - 161 328 - -
HCH4g0496 962 PANTHER IONOTROPIC GLUTAMATE RECEPTOR 44 866 IPR015683 GO:0005886(PANTHER)|GO:0015276(PANTHER)|GO:0038023(PANTHER)
HCH4g0496 962 Pfam Ligand-gated ion channel 580 827 IPR001320 GO:0015276(InterPro)|GO:0016020(InterPro)
HCH4g0496 962 Pfam Ligated ion channel L-glutamate- and glycine-binding site 473 562 IPR019594 GO:0015276(InterPro)|GO:0016020(InterPro)
HCH4g0496 962 Gene3D - 458 570 - -
HCH4g0496 962 SUPERFAMILY Periplasmic binding protein-like I 40 440 IPR028082 -
HCH4g0496 962 CDD GluR_Plant 456 795 - -
HCH4g0496 962 PIRSF IGluLR_plant 9 929 IPR017103 -
HCH4g0496 962 FunFam Glutamate receptor 571 701 - -
HCH4g0496 962 Gene3D - 571 697 - -
HCH4g0496 962 FunFam Glutamate receptor 165 323 - -
HCH4g0496 962 SMART GluR_14 459 797 IPR001320 GO:0015276(InterPro)|GO:0016020(InterPro)
HCH4g0496 962 SUPERFAMILY Periplasmic binding protein-like II 435 797 - -
HCH4g0496 962 Gene3D - 348 457 - -
HCH4g0496 962 FunFam Glutamate receptor 457 571 - -
HCH4g0496 962 ProSiteProfiles Prokaryotic membrane lipoprotein lipid attachment site profile. 1 21 - -
HCH4g0496 962 CDD PBP1_GABAb_receptor_plant 45 429 IPR044440 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
HCH4g0493 HCH-Chr4:3205334 HCH4g0496 HCH-Chr4:3227654 2.00E-272 dispersed
HCH4g0496 HCH-Chr4:3227654 HCH6g0120 HCH-Chr6:1510322 8.00E-231 dispersed
HCH4g0495 HCH-Chr4:3216944 HCH4g0496 HCH-Chr4:3227654 9.90E-268 tandem
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
HCH4g0496 K05387 - csv:101205977 1204.5