Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| HCH4g0507 | ATGAGCCTTCGCAAGGGCTCTAAAGTTTGGGTGGAAGACAGAGATTTTGCTTGGGCTGCAGCTGAAGTTCTCGACTTCGTTGGTAAACAAGTTCGAATTTTGACTGTTACTGGAAAGAAGGTATTGGCTTCTCCTGAGAAGCTGTTATCAAGGGATGATGATGAAGACGACCATGGAGGAGTTGATGATATGACGAAGTTGACCTATTTAAATGAGCCTGGAGTGCTTTACAATCTTCAGAGAAGATATTCCCTCAATGATATATACACATACACCGGTAGCATTTTGATTGCTGTTAACCCATTCACCAAGCTTCCCCATCTGTACAATGTACACATGATGGAGCAGTATAAGGGAGCTCCTTTTGGGGAATTGAGCCCTCATGTTTTTGCTGTTGCTGATGCATCATATAGAGCAATGATTAGTGAGGGTCGAAGCCAGTCTATATTGGTTAGTGGAGAGAGTGGGGCGGGGAAAACTGAGACCACAAAATTGATTATGCAGTATCTTACATTTGTTGGTGGTCGAGCTGCAGGCAATGACAGAACTGTCGAGCAGCAAGTTCTTGAATCAAATCCATTACTGGAAGCATTTGGTAATGCAAGGACCGTAAGAAATGATAATTCCAGTCGTTTTGGAAAGTTTGTTGAGATCCAGTTTGATGCAAATGGTAGAATATCTGGTGCTGCAATCAGAACTTATCTTCTGGAACGTTCTCGTGTAGTACAAATCACAAACCCTGAGAGGAACTATCATTGTTTCTATCAGCTATGTGCATCTGGAAGGGATGCAGAGAGTTACAAGTTAGACCACCCAAGTCATTTTCACTACTTAAATCAAAGCAAGACCTATGAATTAGATGGTGTTAGCAACGCTGAGGAGTATATTCGGACCAGGAGAGCAATGGATATAGTTGGTATTAGTCACGAGGATCAGGAAGCTATCTTCCGTACTTTGGCTGCAATTTTGCATCTGGGAAACATTGAGTTTTCTCCTGGAAAAGAACATGACTCTTCAGTCTTGAAGGATCAAAAGTCTACCTTTCATCTAGAGATGGCTGCTAATCTTTTCATGTGTGATTCCAACCTCTTGGTCTCAGCACTCTGTACACGTTCAATCCAAACTCATGAAGGAATTATTGTCAAAGCTCTAGATTGTGATGGTGCCATTGCTAGTCGGGATGCATTGGCAAAGACCGTTTATGCTCGACTCTTTGATTGGCTTGTTGATAAGATCAATCGGTCTGTTGGACAAGATTTGAATTCTCAACTTCAAATTGGATTGTTGGACATTTATGGTTTTGAATGCTTTAAGGATAATAGTTTTGAGCAGTTTTGCATCAATTTTGCGAATGAAAAGCTTCAGCAACATTTTAATGAGCATGTATTTAAGATGGAGCAAGAAGAGTATAGCAAAGAAGAAATCAATTGGAGTTATATCGAATTCATTGACAATCAAGATGTGTTAGATTTGATCGAGAAGAAACCTATTGGGATAATTGCTCTGCTGGATGAAGCTTGTATGTTTCCAAGATCAACTCATGAAACATTCTCAACCAAATTATTTCAGAATTTCCATGCTCATACAAGGTTGGAAAAAGTAAAATTTTCAGAAACGGATTTTACTCTTTCCCATTATGCTGGAAAGGTTACTTATCATACAAATACATTTTTAGATAAAAACCGTGATTATGTTGTGGTAGAGCATTGCAATCTATTGGCTTCTTCTAGATGCACTTTTGTCGCTGGTCTCTTCTCTTCCTTACCAGAGGAATCTTCAAGATCATCCTATAAATTTTCTTCTGTAGCTTTGAGATTTAAGCAACAACTTCAAGCATTAATGGAGACACTCAACTCAACGGAGCCTCATTATATACGTTGTGTGAAGCCCAACTCTCTTAATAGGCCTCAGAAGTTTGAGAATCTGAGTATTCTGCACCAATTGCGCTGTGGGGGTGTTTTGGAGGCTGTTCGTATAAGTCTTGCAGGTTATCCTACTAGACGAACTTATGCTGAATTTATAGATCGTTTCGGATTGCTGGCTCCTGATTTAATGGATGGAAGTTATGATGAAAAAGTGATCACAGAGAAGATTCTACAAAAGTTGAAGCTAAAAAATTTTCAGTTGGGTAGAACCAAAGTATTTCTTAGGGCTGGTCAAATTGGAATTTTGGATGCTCGGCGAGCTGAAGTATTGGATAATGCTGCAAAGTGTATTCAACGTCGGTTACGAACATATCATGCACGAAGGGATTTTCTATTGATACGCTCTACTGCAGTTGCACTCCAAGCGTATTGTAGAGGATGCCTTGCTCGAAAGTTATATGTTGCAAAACGAGAAAGCACTTCTGCTACTACAATTCAAAAGTATATTCGCCGGTGGCTATTGAGGAATGCTTACTTGAAACTTTATTCAGCTGCTCTAACCGTGCAGTCAAATATTCGTGGCTTTATGACACGCAATAGGTTTTTGCACGAAAGAAGACGTAAAGCTGCAATATTAATTCAGGGTCGATGGAGGACGTACAAGGTTCGTGCTGTTTTCCACCGTCACCAAGCTTATATTATTGCTTTGCAATGTCGATGGAGACAAAAACTTGCAAAAAGGGAACTTCGACGACTTAAGCAAGAGGCTAATGAAGCTGGAGCATTGCGTTTAGCAAAGAACAAACTTGAGAAGCAGCTAGAGGATCTTACATGGCGGTTGCACCTGGAAAAAAGATTGCGGGCTTCCAATGAAGAGGCTAAGTCTAATGATATACTAAAATTACAAAAAACGCTAAAGTCTTTGAATCTGGAGTTGGATGCAGCTAAGTTAACCACAATTAATGAGTGCAACAAAAATGCTGTGCTTCAAAATCAAGTAGAATTGTTGGCCAAGGAGAAGCACGCTTTCGAAAGGGAAATTGTGGCAGTAGCTGAATTAAGAAAAGAAAATGCATTCCTCAAGAGTGCTTTGGATGCCTTGGAGAAGAAGAACGCCACTCTGGAGGTTCAGCTTGTTAAGTCACAAAAGGATAATAATAACACTTTGGAGAAGTTGCAAGAGGTTGAGCAGAAATGTGCTCAGCTACAACTGAATGTGAAAGGTCTTGAGGAGAAACTCTCACTTTTAGAGGATGAGAATCATATATTGCGACAGAAAGCCTTAAGTGCAACTCCAAGGAGCAACCGACCTGGTTTTGTAAGAGCATTGTCGGAGAAATCATCTGTTGCACTCGTTCCTCATGCTGATAGGAAAACCCTATTTGAGTCACCAACACCTACAAAACTGGTTGCACCTTTTTCACAGGGCCTTTCTGAATCACGGCGACCAAAATTGGCTGTGGAGAGGCACCAGGAAAATTATGAAGTCCTCTCTAGGTGTATTAAAGAAGATTTGGGGTTTAAAGGTGGCAAACCACTGGCCGCTTGTATCATTTACAAATGCCTTCTGAATTGGCATGCCTTTGAATCAGAACGAACGGTTATTTTTGACTACATAATCGAGGGAGTCAATGATGCTCTCAAGGCTGGAGATGAGAATATTACCTTGCCATATTGGTTGTCAAATGCCTCAGCATTGCTATGCCTCCTGCAAAGGAATTTACGTTCAAATGGATTTTTGAGTACAGCTACTCAGCGCTCTACAGGGTCTGCTGGCTTAGCTAGCAGGATTGGGCAAGGACTAAAATCACCCTTCAAATATCTTGGTTTTGAAGATGGGATTTCTCATCTAGAAGCTAGATATCCTGCAATATTGTTTAAACAGCAATTAACTGCTTGCGTGGAGAAAATTTTTGGCTTGATCCGTGATAATTTGAAGAAAGAATTATCTCCACTATTGGGCTCATGTATTCAGGCACCTAAAACTGCACGAGTGCATGCTGGAAAGTCCTCTAGATCGCCTGGTGTTCAGCAGCCTACTAATAGTCCATGGGATAATATCATCAAGTTTTTGGATTCTCTGATGAGTCAATTACGTGCAAATCATGTACCATCTTTCTTCATTCGTAAATTAATCACTCAGGTGTTCTCATTCATCAACATTTCACTATTTAATAGCCTCCTCCTGCGGCGTGAATGTTGTACATTTTCAAATGGGGAGTATGTGAAATCTGGTCTTGCAGAACTAGAGAAGTGGATTGTCAATGCAACAGAAGAGTATTCAGGAACCTCTTGGCACGAGCTGAACTATATCAGACAAGCTGTTGGGTTTCTGGTAATACATCAGAAGAGAAGAAAATCACTAGAAGAGATAAGACAGGATCTTTGCCCGGCATTGACAGTGAGACAAATTTATCGTATTAGTACTATGTATTGGGATGACAAATATGGCACTCAGAGTGTGTCCAATGAGGTGGTAGCTCAAATGAGGGAGATTCTAAACAAGGATAATCAGAACTTAACCTCCAATTCATTTTTGTTGGATGATGATCTAAGTATTCCATTCTCTACTGAAGACATCGATATGGCTCTTCCTTCGATTGAGCCTTCAGACATAGAACTTCCGACGTTCTTGTCAGAGTATCCTTGTGCACAATTTTTAGTCCAGCATCCAAAGCTTACACAACAGTAA | 4557 | 40.4 | MSLRKGSKVWVEDRDFAWAAAEVLDFVGKQVRILTVTGKKVLASPEKLLSRDDDEDDHGGVDDMTKLTYLNEPGVLYNLQRRYSLNDIYTYTGSILIAVNPFTKLPHLYNVHMMEQYKGAPFGELSPHVFAVADASYRAMISEGRSQSILVSGESGAGKTETTKLIMQYLTFVGGRAAGNDRTVEQQVLESNPLLEAFGNARTVRNDNSSRFGKFVEIQFDANGRISGAAIRTYLLERSRVVQITNPERNYHCFYQLCASGRDAESYKLDHPSHFHYLNQSKTYELDGVSNAEEYIRTRRAMDIVGISHEDQEAIFRTLAAILHLGNIEFSPGKEHDSSVLKDQKSTFHLEMAANLFMCDSNLLVSALCTRSIQTHEGIIVKALDCDGAIASRDALAKTVYARLFDWLVDKINRSVGQDLNSQLQIGLLDIYGFECFKDNSFEQFCINFANEKLQQHFNEHVFKMEQEEYSKEEINWSYIEFIDNQDVLDLIEKKPIGIIALLDEACMFPRSTHETFSTKLFQNFHAHTRLEKVKFSETDFTLSHYAGKVTYHTNTFLDKNRDYVVVEHCNLLASSRCTFVAGLFSSLPEESSRSSYKFSSVALRFKQQLQALMETLNSTEPHYIRCVKPNSLNRPQKFENLSILHQLRCGGVLEAVRISLAGYPTRRTYAEFIDRFGLLAPDLMDGSYDEKVITEKILQKLKLKNFQLGRTKVFLRAGQIGILDARRAEVLDNAAKCIQRRLRTYHARRDFLLIRSTAVALQAYCRGCLARKLYVAKRESTSATTIQKYIRRWLLRNAYLKLYSAALTVQSNIRGFMTRNRFLHERRRKAAILIQGRWRTYKVRAVFHRHQAYIIALQCRWRQKLAKRELRRLKQEANEAGALRLAKNKLEKQLEDLTWRLHLEKRLRASNEEAKSNDILKLQKTLKSLNLELDAAKLTTINECNKNAVLQNQVELLAKEKHAFEREIVAVAELRKENAFLKSALDALEKKNATLEVQLVKSQKDNNNTLEKLQEVEQKCAQLQLNVKGLEEKLSLLEDENHILRQKALSATPRSNRPGFVRALSEKSSVALVPHADRKTLFESPTPTKLVAPFSQGLSESRRPKLAVERHQENYEVLSRCIKEDLGFKGGKPLAACIIYKCLLNWHAFESERTVIFDYIIEGVNDALKAGDENITLPYWLSNASALLCLLQRNLRSNGFLSTATQRSTGSAGLASRIGQGLKSPFKYLGFEDGISHLEARYPAILFKQQLTACVEKIFGLIRDNLKKELSPLLGSCIQAPKTARVHAGKSSRSPGVQQPTNSPWDNIIKFLDSLMSQLRANHVPSFFIRKLITQVFSFINISLFNSLLLRRECCTFSNGEYVKSGLAELEKWIVNATEEYSGTSWHELNYIRQAVGFLVIHQKRRKSLEEIRQDLCPALTVRQIYRISTMYWDDKYGTQSVSNEVVAQMREILNKDNQNLTSNSFLLDDDLSIPFSTEDIDMALPSIEPSDIELPTFLSEYPCAQFLVQHPKLTQQ | 1518 |
Gff information
| Chromosome | Start | End | Strand | Old_gene | Gene | Num |
|---|---|---|---|---|---|---|
| 4 | 3321214 | 3343540 | - | evm.model.ptg000015l.507 | HCH4g0507 | 542751 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| HCH4g0507 | 1518 | Pfam | Myosin head (motor domain) | 61 | 717 | IPR001609 | GO:0003774(InterPro)|GO:0005524(InterPro)|GO:0016459(InterPro) | |
| HCH4g0507 | 1518 | SMART | DIL_2 | 1332 | 1439 | IPR002710 | - | |
| HCH4g0507 | 1518 | Coils | Coil | 948 | 968 | - | - | |
| HCH4g0507 | 1518 | SUPERFAMILY | P-loop containing nucleoside triphosphate hydrolases | 778 | 827 | IPR027417 | - | |
| HCH4g0507 | 1518 | Gene3D | - | 731 | 781 | - | - | |
| HCH4g0507 | 1518 | Gene3D | - | 782 | 832 | - | - | |
| HCH4g0507 | 1518 | Gene3D | Myosin VI head, motor domain, U50 subdomain | 308 | 598 | - | - | |
| HCH4g0507 | 1518 | ProSiteProfiles | Myosin N-terminal SH3-like domain profile. | 4 | 53 | IPR004009 | GO:0003774(InterPro)|GO:0005524(InterPro)|GO:0016459(InterPro) | |
| HCH4g0507 | 1518 | ProSiteProfiles | IQ motif profile. | 828 | 857 | - | - | |
| HCH4g0507 | 1518 | ProSiteProfiles | Myosin motor domain profile. | 59 | 729 | IPR001609 | GO:0003774(InterPro)|GO:0005524(InterPro)|GO:0016459(InterPro) | |
| HCH4g0507 | 1518 | SMART | iq_5 | 731 | 753 | IPR000048 | GO:0005515(InterPro) | |
| HCH4g0507 | 1518 | SMART | iq_5 | 827 | 849 | IPR000048 | GO:0005515(InterPro) | |
| HCH4g0507 | 1518 | SMART | iq_5 | 754 | 776 | IPR000048 | GO:0005515(InterPro) | |
| HCH4g0507 | 1518 | SMART | iq_5 | 802 | 824 | IPR000048 | GO:0005515(InterPro) | |
| HCH4g0507 | 1518 | SMART | iq_5 | 779 | 801 | IPR000048 | GO:0005515(InterPro) | |
| HCH4g0507 | 1518 | Pfam | IQ calmodulin-binding motif | 734 | 752 | IPR000048 | GO:0005515(InterPro) | |
| HCH4g0507 | 1518 | Pfam | IQ calmodulin-binding motif | 759 | 775 | IPR000048 | GO:0005515(InterPro) | |
| HCH4g0507 | 1518 | Pfam | IQ calmodulin-binding motif | 805 | 823 | IPR000048 | GO:0005515(InterPro) | |
| HCH4g0507 | 1518 | Pfam | IQ calmodulin-binding motif | 783 | 800 | IPR000048 | GO:0005515(InterPro) | |
| HCH4g0507 | 1518 | Pfam | IQ calmodulin-binding motif | 829 | 848 | IPR000048 | GO:0005515(InterPro) | |
| HCH4g0507 | 1518 | CDD | MYSc_Myo11 | 73 | 717 | IPR036018 | - | |
| HCH4g0507 | 1518 | ProSiteProfiles | Dilute domain profile. | 1159 | 1457 | IPR002710 | - | |
| HCH4g0507 | 1518 | Gene3D | - | 249 | 306 | - | - | |
| HCH4g0507 | 1518 | PRINTS | Myosin heavy chain signature | 146 | 171 | IPR001609 | GO:0003774(InterPro)|GO:0005524(InterPro)|GO:0016459(InterPro) | |
| HCH4g0507 | 1518 | PRINTS | Myosin heavy chain signature | 193 | 220 | IPR001609 | GO:0003774(InterPro)|GO:0005524(InterPro)|GO:0016459(InterPro) | |
| HCH4g0507 | 1518 | PRINTS | Myosin heavy chain signature | 425 | 453 | IPR001609 | GO:0003774(InterPro)|GO:0005524(InterPro)|GO:0016459(InterPro) | |
| HCH4g0507 | 1518 | PRINTS | Myosin heavy chain signature | 478 | 506 | IPR001609 | GO:0003774(InterPro)|GO:0005524(InterPro)|GO:0016459(InterPro) | |
| HCH4g0507 | 1518 | PRINTS | Myosin heavy chain signature | 89 | 108 | IPR001609 | GO:0003774(InterPro)|GO:0005524(InterPro)|GO:0016459(InterPro) | |
| HCH4g0507 | 1518 | FunFam | Myosin heavy chain | 249 | 303 | - | - | |
| HCH4g0507 | 1518 | Gene3D | - | 664 | 730 | - | - | |
| HCH4g0507 | 1518 | CDD | MyosinXI_CBD | 1110 | 1480 | IPR037975 | GO:0007015(InterPro) | |
| HCH4g0507 | 1518 | Gene3D | Kinesin motor domain | 62 | 659 | IPR036961 | - | |
| HCH4g0507 | 1518 | Coils | Coil | 920 | 940 | - | - | |
| HCH4g0507 | 1518 | ProSiteProfiles | IQ motif profile. | 755 | 784 | - | - | |
| HCH4g0507 | 1518 | Coils | Coil | 864 | 908 | - | - | |
| HCH4g0507 | 1518 | Coils | Coil | 972 | 1048 | - | - | |
| HCH4g0507 | 1518 | PANTHER | MYOSIN | 9 | 829 | - | GO:0000146(PANTHER)|GO:0005737(PANTHER)|GO:0007015(PANTHER)|GO:0015629(PANTHER)|GO:0030050(PANTHER)|GO:0031982(PANTHER)|GO:0051015(PANTHER) | |
| HCH4g0507 | 1518 | Gene3D | - | 435 | 620 | - | - | |
| HCH4g0507 | 1518 | ProSiteProfiles | IQ motif profile. | 803 | 832 | - | - | |
| HCH4g0507 | 1518 | Pfam | DIL domain | 1333 | 1436 | IPR002710 | - | |
| HCH4g0507 | 1518 | SUPERFAMILY | P-loop containing nucleoside triphosphate hydrolases | 29 | 777 | IPR027417 | - | |
| HCH4g0507 | 1518 | ProSiteProfiles | IQ motif profile. | 851 | 880 | - | - | |
| HCH4g0507 | 1518 | SMART | MYSc_2a | 53 | 730 | IPR001609 | GO:0003774(InterPro)|GO:0005524(InterPro)|GO:0016459(InterPro) | |
| HCH4g0507 | 1518 | ProSiteProfiles | IQ motif profile. | 780 | 809 | - | - |
Duplication type information
| Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
|---|---|---|---|---|---|---|
| HCH1g0546 | HCH-Chr1:54426403 | HCH4g0507 | HCH-Chr4:3321214 | 5.30E-168 | dispersed | |
| HCH4g0507 | HCH-Chr4:3321214 | HCH7g1382 | HCH-Chr7:46587930 | 0.00E+00 | dispersed | |
| HCH12g1113 | HCH-Chr12:8661373 | HCH4g0507 | HCH-Chr4:3321214 | 9.00E-152 | transposed | |
| HCH4g0507 | HCH-Chr4:3321214 | HCH8g0621 | HCH-Chr8:42990089 | 0.00E+00 | wgd |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| HCH4g0507 | K10357 | - | csv:101210527 | 2764.18 |