Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
HCH4g0514 ATGGACGGAGGTGCTCCGTACAATCCACGTACGGTCGAAGAGGTTTTTAGGGATTTTAAAGGTCGTAGAGCCGGTTTAATTAAGGCTCTTACTACTGATGTTGAAGAATTTTATCAGCAATGTGATCCTGAGAAAGAAAATCTCTGCCTTTATGGATTTCCCAGCGAGCAGTGGGAAGTCAATTTACCAGCAGAAGAGGTGCCTCCAGAGCTTCCAGAACCTGCGCTGGGTATTAATTTTGCTCGAGATGGGATGCAAGAGAAGGATTGGCTATCCTTGGTTGCAGTGCACAGTGATGTTTGGCTACTTTCCGTGGCGTTTTATTTTGGATCTAGGTTTGGATTTGATAGAACAGATCGGAAACGTCTATTTAATATGATAAATGATCTTCCAACAATATTTGAAGTGGTGACTGGGACGGCCAAAAAACAAGTTAAGGATAAGTCATCAGTTTCAAATCATAGCAGTAATAAATCTAAATCAAATCCAAAGCGGAGTTCTGAACCCCAATTAAAAGTTCCAAAGGCAGTTCAATCAAAGGATGAGGATGAGGAAGGAGAAGCGGAAGGTTTGGAAGAAGAAGATGATGAAGAGCATGGAGAAACGCTGTGTGGAGCTTGTGGAGAGAATTACGCATCTGATGAGTTCTGGATTTGCTGTGACATATGTGAGAAATGGTTCCATGGGAAGTGTGTCAAGATCACCCCGGCAAGGGCAGAACATATTAAGCAGTATAAATGTCCATCTTGCAGCAACAAGAGAGTTCGATCCTGA 774 42.64 MDGGAPYNPRTVEEVFRDFKGRRAGLIKALTTDVEEFYQQCDPEKENLCLYGFPSEQWEVNLPAEEVPPELPEPALGINFARDGMQEKDWLSLVAVHSDVWLLSVAFYFGSRFGFDRTDRKRLFNMINDLPTIFEVVTGTAKKQVKDKSSVSNHSSNKSKSNPKRSSEPQLKVPKAVQSKDEDEEGEAEGLEEEDDEEHGETLCGACGENYASDEFWICCDICEKWFHGKCVKITPARAEHIKQYKCPSCSNKRVRS 257
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 3390936 3393190 + evm.model.ptg000015l.514 HCH4g0514 542758
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
HCH4g0514 257 SMART PHD_3 203 251 IPR001965 -
HCH4g0514 257 Pfam PHD-finger 204 250 IPR019787 -
HCH4g0514 257 Pfam Alfin 11 138 IPR021998 GO:0006355(InterPro)|GO:0042393(InterPro)
HCH4g0514 257 CDD PHD_AL_plant 203 253 IPR044104 -
HCH4g0514 257 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 194 252 IPR013083 -
HCH4g0514 257 PANTHER CPG BINDING PROTEIN 8 256 IPR045104 GO:0000976(PANTHER)|GO:0003712(PANTHER)|GO:0005634(PANTHER)|GO:0006355(InterPro)|GO:0042393(InterPro)
HCH4g0514 257 MobiDBLite consensus disorder prediction 145 197 - -
HCH4g0514 257 ProSiteProfiles Zinc finger PHD-type profile. 201 253 IPR019787 -
HCH4g0514 257 MobiDBLite consensus disorder prediction 145 168 - -
HCH4g0514 257 MobiDBLite consensus disorder prediction 183 197 - -
HCH4g0514 257 ProSitePatterns Zinc finger PHD-type signature. 204 250 IPR019786 -
HCH4g0514 257 FunFam PHD finger alfin-like protein 196 252 - -
HCH4g0514 257 SUPERFAMILY FYVE/PHD zinc finger 193 254 IPR011011 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
HCH11g0087 HCH-Chr11:1152436 HCH4g0514 HCH-Chr4:3390936 1.20E-87 dispersed
HCH11g0791 HCH-Chr11:38197646 HCH4g0514 HCH-Chr4:3390936 2.00E-96 dispersed
HCH1g0364 HCH-Chr1:50779798 HCH4g0514 HCH-Chr4:3390936 2.20E-89 dispersed
HCH10g0555 HCH-Chr10:4467845 HCH4g0514 HCH-Chr4:3390936 3.20E-121 wgd
HCH4g0514 HCH-Chr4:3390936 HCH4g1501 HCH-Chr4:11420387 1.10E-105 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
33435 PF12165 Alfin 6.90E-69 No_clan HCH TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
HCH4g0514 K26274 - csv:101208889 456.062