Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
HCH4g0514 ATGGACGGAGGTGCTCCGTACAATCCACGTACGGTCGAAGAGGTTTTTAGGGATTTTAAAGGTCGTAGAGCCGGTTTAATTAAGGCTCTTACTACTGATGTTGAAGAATTTTATCAGCAATGTGATCCTGAGAAAGAAAATCTCTGCCTTTATGGATTTCCCAGCGAGCAGTGGGAAGTCAATTTACCAGCAGAAGAGGTGCCTCCAGAGCTTCCAGAACCTGCGCTGGGTATTAATTTTGCTCGAGATGGGATGCAAGAGAAGGATTGGCTATCCTTGGTTGCAGTGCACAGTGATGTTTGGCTACTTTCCGTGGCGTTTTATTTTGGATCTAGGTTTGGATTTGATAGAACAGATCGGAAACGTCTATTTAATATGATAAATGATCTTCCAACAATATTTGAAGTGGTGACTGGGACGGCCAAAAAACAAGTTAAGGATAAGTCATCAGTTTCAAATCATAGCAGTAATAAATCTAAATCAAATCCAAAGCGGAGTTCTGAACCCCAATTAAAAGTTCCAAAGGCAGTTCAATCAAAGGATGAGGATGAGGAAGGAGAAGCGGAAGGTTTGGAAGAAGAAGATGATGAAGAGCATGGAGAAACGCTGTGTGGAGCTTGTGGAGAGAATTACGCATCTGATGAGTTCTGGATTTGCTGTGACATATGTGAGAAATGGTTCCATGGGAAGTGTGTCAAGATCACCCCGGCAAGGGCAGAACATATTAAGCAGTATAAATGTCCATCTTGCAGCAACAAGAGAGTTCGATCCTGA 774 42.64 MDGGAPYNPRTVEEVFRDFKGRRAGLIKALTTDVEEFYQQCDPEKENLCLYGFPSEQWEVNLPAEEVPPELPEPALGINFARDGMQEKDWLSLVAVHSDVWLLSVAFYFGSRFGFDRTDRKRLFNMINDLPTIFEVVTGTAKKQVKDKSSVSNHSSNKSKSNPKRSSEPQLKVPKAVQSKDEDEEGEAEGLEEEDDEEHGETLCGACGENYASDEFWICCDICEKWFHGKCVKITPARAEHIKQYKCPSCSNKRVRS 257
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 3390936 3393190 + evm.model.ptg000015l.514 HCH4g0514 542758

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
HCH4g0514 257 SMART PHD_3 203 251 IPR001965 -
HCH4g0514 257 Pfam PHD-finger 204 250 IPR019787 -
HCH4g0514 257 Pfam Alfin 11 138 IPR021998 GO:0006355(InterPro)|GO:0042393(InterPro)
HCH4g0514 257 CDD PHD_AL_plant 203 253 IPR044104 -
HCH4g0514 257 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 194 252 IPR013083 -
HCH4g0514 257 PANTHER CPG BINDING PROTEIN 8 256 IPR045104 GO:0000976(PANTHER)|GO:0003712(PANTHER)|GO:0005634(PANTHER)|GO:0006355(InterPro)|GO:0042393(InterPro)
HCH4g0514 257 MobiDBLite consensus disorder prediction 145 197 - -
HCH4g0514 257 ProSiteProfiles Zinc finger PHD-type profile. 201 253 IPR019787 -
HCH4g0514 257 MobiDBLite consensus disorder prediction 145 168 - -
HCH4g0514 257 MobiDBLite consensus disorder prediction 183 197 - -
HCH4g0514 257 ProSitePatterns Zinc finger PHD-type signature. 204 250 IPR019786 -
HCH4g0514 257 FunFam PHD finger alfin-like protein 196 252 - -
HCH4g0514 257 SUPERFAMILY FYVE/PHD zinc finger 193 254 IPR011011 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
HCH4g0514 K26274 - - csv:101208889 456.062
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
HCH11g0087 HCH-Chr11:1152436 HCH4g0514 HCH-Chr4:3390936 1.20E-87 dispersed
HCH11g0791 HCH-Chr11:38197646 HCH4g0514 HCH-Chr4:3390936 2.00E-96 dispersed
HCH1g0364 HCH-Chr1:50779798 HCH4g0514 HCH-Chr4:3390936 2.20E-89 dispersed
HCH10g0555 HCH-Chr10:4467845 HCH4g0514 HCH-Chr4:3390936 3.20E-121 wgd
HCH4g0514 HCH-Chr4:3390936 HCH4g1501 HCH-Chr4:11420387 1.10E-105 wgd
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
HCH11g0791 . 1 252 Alfin-like Transcription Factor Family AT1G14510 84.5 2.1e-114 408.7
HCH10g0555 . 17 259 Alfin-like Transcription Factor Family AT1G14510 69.1 1.7e-95 345.9
HCH4g0514 . 9 254 Alfin-like Transcription Factor Family AT1G14510 68.7 2.4e-94 342.0
HCH4g1501 . 10 255 Alfin-like Transcription Factor Family AT1G14510 63.0 2.9e-87 318.5
HCH1g0364 . 8 235 Alfin-like Transcription Factor Family AT1G14510 61.3 3.8e-79 291.6
HCH11g0087 . 7 236 Alfin-like Transcription Factor Family AT1G14510 59.6 3.2e-78 288.5
HCH10g0555 . 9 261 Alfin-like Transcription Factor Family AT5G26210 74.3 7.1e-110 393.7
HCH4g0514 . 1 257 Alfin-like Transcription Factor Family AT5G26210 72.8 3.9e-108 387.9
HCH11g0791 . 9 254 Alfin-like Transcription Factor Family AT5G26210 74.9 1.9e-94 342.4
HCH4g1501 . 5 255 Alfin-like Transcription Factor Family AT5G26210 64.7 4.2e-94 341.3
HCH1g0364 . 7 240 Alfin-like Transcription Factor Family AT5G26210 59.9 1.3e-82 303.1
HCH11g0087 . 4 238 Alfin-like Transcription Factor Family AT5G26210 57.8 1.6e-80 296.2
HCH4g0514 . 1 257 Alfin-like Transcription Factor Family AT3G42790 68.6 7.8e-101 363.6
HCH10g0555 . 9 261 Alfin-like Transcription Factor Family AT3G42790 68.5 1.5e-99 359.4
HCH4g1501 . 1 255 Alfin-like Transcription Factor Family AT3G42790 63.1 4.3e-91 331.3
HCH11g0791 . 9 254 Alfin-like Transcription Factor Family AT3G42790 72.0 1.6e-90 329.3
HCH1g0364 . 7 240 Alfin-like Transcription Factor Family AT3G42790 61.1 4.7e-82 301.2
HCH11g0087 . 6 238 Alfin-like Transcription Factor Family AT3G42790 56.8 7.1e-78 287.3
HCH1g0364 . 1 241 Alfin-like Transcription Factor Family AT5G05610 80.2 2.0e-114 408.7
HCH11g0087 . 4 239 Alfin-like Transcription Factor Family AT5G05610 75.1 1.0e-105 379.8
HCH4g0514 . 8 256 Alfin-like Transcription Factor Family AT5G05610 65.2 4.9e-92 334.3
HCH10g0555 . 16 261 Alfin-like Transcription Factor Family AT5G05610 63.6 4.5e-90 327.8
HCH4g1501 . 9 252 Alfin-like Transcription Factor Family AT5G05610 63.5 5.9e-90 327.4
HCH11g0791 . 9 254 Alfin-like Transcription Factor Family AT5G05610 62.2 2.4e-83 305.4
HCH1g0364 . 43 241 Alfin-like Transcription Factor Family AT3G11200 82.2 2.4e-96 348.6
HCH11g0087 . 42 239 Alfin-like Transcription Factor Family AT3G11200 74.3 3.3e-85 311.6
HCH4g0514 . 44 256 Alfin-like Transcription Factor Family AT3G11200 63.7 4.0e-75 278.1
HCH10g0555 . 52 261 Alfin-like Transcription Factor Family AT3G11200 63.7 2.2e-73 272.3
HCH4g1501 . 45 248 Alfin-like Transcription Factor Family AT3G11200 61.7 2.3e-70 262.3
HCH11g0791 . 44 254 Alfin-like Transcription Factor Family AT3G11200 62.6 1.2e-68 256.5
HCH11g0791 . 1 161 Alfin-like Transcription Factor Family AT2G02470 87.0 4.2e-78 288.1
HCH10g0555 . 9 166 Alfin-like Transcription Factor Family AT2G02470 76.6 2.8e-66 248.8
HCH4g0514 . 1 158 Alfin-like Transcription Factor Family AT2G02470 76.6 2.0e-64 242.7
HCH4g1501 . 10 144 Alfin-like Transcription Factor Family AT2G02470 78.5 6.8e-60 227.6
HCH1g0364 . 8 155 Alfin-like Transcription Factor Family AT2G02470 67.5 5.6e-54 208.0
HCH11g0087 . 7 154 Alfin-like Transcription Factor Family AT2G02470 66.2 2.1e-53 206.1
HCH4g0514 . 1 167 Alfin-like Transcription Factor Family AT5G20510 78.6 4.7e-74 274.2
HCH10g0555 . 9 172 Alfin-like Transcription Factor Family AT5G20510 78.2 3.1e-73 271.6
HCH4g1501 . 1 164 Alfin-like Transcription Factor Family AT5G20510 73.3 4.3e-67 251.1
HCH11g0791 . 3 172 Alfin-like Transcription Factor Family AT5G20510 69.8 5.2e-65 244.2
HCH1g0364 . 7 157 Alfin-like Transcription Factor Family AT5G20510 64.3 9.2e-54 206.8
HCH11g0087 . 6 163 Alfin-like Transcription Factor Family AT5G20510 60.0 6.6e-52 200.7
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0000240 6 20 6 5 4 4 8 4 4 3 3 4 4 3 3 7 4 8 7 3 3 4 4 4 5 2 5 11 7 4 159
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
33435 PF12165 Alfin 6.90E-69 No_clan HCH TF