Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
HCH4g0520 ATGGAGGAAATGTCTTCGGGGGTTGTGGTGCCATTTAGGGTAGGTAATTCAGTCTGTGATAACCCCAACATGGCAAGCCCCATGGATATCACAAGACTTAAGCTAATGGCGGATACGGCAGGTTTGTTATCTGATTCTGTGACTAAAGCTTCTGCTGAAGCTATTGAAGTGGATTCTGAGGATTGTAAGAGTTCTAATGTGGAGGAAGAGGTGGTCAGTGTTACTACGGCGTTGGTTCCGGATGATGATAAGTGCGAAGGATTGCATTTGTCAGACATGTTATCTCAAAATAAAATCATTTGGGTTGCTGGAGATGGGACAATATCCCATGGAAGTGAGGAAGATGATTCTTTTTCTCTGGAGGGAGATCATATTTTTGACAGCTCTTGTTCTCATTCAGTGGCCAGTGATAATGGCAGCATTTGTGGAGACGATTTTTTAGGTTCCGAGGCATCTTCTGAGGTTGAAACTCTCAGTTTCATCAGCCATGTGAAGAGCATTTGTGATGTTGAAATGGTAGCCAAAGCCAATTCGGGAGAGTCAAGTGTTGAAAGCCTCGGGATTGACATCGCGAGTTCTCCTGCTGTAGCAGTTAGTCTTGAAGATGATACTGGAAATGGGTTAGGTGTTGAAGCATCTAACATGGCTCTTCAGCTACCCCTTGACAGAAAGGCGAGTGAAATGATTGGTCGAAGTGTTTTTGAGGTAGATTATGTTCCCCTTTGGGGATTTACATCAGTTTGTGGTAGAAGACCGGAGATGGAAGATGCAGTGGCAGTTGTACCTAGTTTTTCAGAAATTCCTGTTCAAATGCTTGTTAGTGACCGAGTTCTTCATAGCTCAAGCAAGTCTATAGCTCATCAAAATATTCATTTTTTTGGAGTTTATGACGGTCATGGTGGCTCTCAGGTTGCAAATTTTTGTCGTGAGCGTATGCATTTGGCTTTAAATGAGGAGATAGAACTCGTTAAGGAAGATGTAGCTGCTGGCAGTATGAAGGATAGCTGCCAAGAGCTATGGAGAAAAGCATTTACCAAATGTTTTCTAAAAGTTGATACTGAAATTGGAGGAAAACCTGGTGTTGAACCAGTTGCCCCCGAAACTGTGGGCTCTACTGCTGTTGTAGCAATTATCTGTGCTTCTCATATCATTGTTGCAAACTGTGGAGACTCAAGAGCAGTTCTTTGTCGTGGGAAGGAGCCAATGGCACTGTCTGTGGATCATAAACCAAATAGAGAAGATGAATATGCAAGGATCGAGGCTGCCGGCGGAAAGGTCATACAGTGGAATGGGCACCGTGTTTTTGGTGTTCTCGCAATGTCGAGATCTATCGGTGATAGATACTTGAAACCATGGATCATTCCTGATCCAGAAGTCACCTTCCTCCCTCGAGCCAAAGACGACGAATGCCTTGTTCTAGCTAGTGATGGTTTATGGGATGTCATGACAAACGAAGAGGTATGCGATTTGGCTCGGAGACGAATTCTTCTATGGCACAAGAAGAATGGTCCCACTCTGTCTTCTGAAAGGGGTGCAGGCATTGATCCTGCAGCACAAGCAGCCGCAGAATACCTCTCGAACCGAGCTCTTCAAAAGGGCAGCAAGGACAACATCACAGTAGTTGTGATTGATTTGAAAGCTCAAAGGAAGTTCAAGACGAAAACGTGA 1668 44.3 MEEMSSGVVVPFRVGNSVCDNPNMASPMDITRLKLMADTAGLLSDSVTKASAEAIEVDSEDCKSSNVEEEVVSVTTALVPDDDKCEGLHLSDMLSQNKIIWVAGDGTISHGSEEDDSFSLEGDHIFDSSCSHSVASDNGSICGDDFLGSEASSEVETLSFISHVKSICDVEMVAKANSGESSVESLGIDIASSPAVAVSLEDDTGNGLGVEASNMALQLPLDRKASEMIGRSVFEVDYVPLWGFTSVCGRRPEMEDAVAVVPSFSEIPVQMLVSDRVLHSSSKSIAHQNIHFFGVYDGHGGSQVANFCRERMHLALNEEIELVKEDVAAGSMKDSCQELWRKAFTKCFLKVDTEIGGKPGVEPVAPETVGSTAVVAIICASHIIVANCGDSRAVLCRGKEPMALSVDHKPNREDEYARIEAAGGKVIQWNGHRVFGVLAMSRSIGDRYLKPWIIPDPEVTFLPRAKDDECLVLASDGLWDVMTNEEVCDLARRRILLWHKKNGPTLSSERGAGIDPAAQAAAEYLSNRALQKGSKDNITVVVIDLKAQRKFKTKT 555
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 3411272 3414461 - evm.model.ptg000015l.520 HCH4g0520 542764
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
HCH4g0520 555 CDD PP2Cc 243 545 IPR001932 -
HCH4g0520 555 ProSiteProfiles PPM-type phosphatase domain profile. 241 545 IPR001932 -
HCH4g0520 555 PANTHER PROTEIN PHOSPHATASE 193 544 IPR015655 GO:0004722(InterPro)|GO:0004722(PANTHER)|GO:0005634(PANTHER)|GO:0006470(InterPro)|GO:0009788(PANTHER)|GO:0035970(PANTHER)
HCH4g0520 555 SMART PP2C_4 231 543 IPR001932 -
HCH4g0520 555 Gene3D - 228 555 IPR036457 -
HCH4g0520 555 FunFam Protein phosphatase 2C 16 229 555 - -
HCH4g0520 555 Pfam Protein phosphatase 2C 275 538 IPR001932 -
HCH4g0520 555 ProSitePatterns PPM-type phosphatase domain signature. 292 300 IPR000222 GO:0043169(InterPro)
HCH4g0520 555 SUPERFAMILY PP2C-like 235 546 IPR036457 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
HCH13g0506 HCH-Chr13:3551931 HCH4g0520 HCH-Chr4:3411272 1.10E-58 dispersed
HCH3g1399 HCH-Chr3:51941522 HCH4g0520 HCH-Chr4:3411272 1.40E-62 dispersed
HCH4g0057 HCH-Chr4:335858 HCH4g0520 HCH-Chr4:3411272 1.40E-32 dispersed
HCH4g0520 HCH-Chr4:3411272 HCH8g0706 HCH-Chr8:43775944 8.90E-73 dispersed
HCH12g0485 HCH-Chr12:2838184 HCH4g0520 HCH-Chr4:3411272 7.70E-182 wgd
HCH4g0520 HCH-Chr4:3411272 HCH6g0091 HCH-Chr6:1159140 2.70E-146 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
HCH4g0520 K14497 - csv:101207918 867.84