Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
HCH4g0521 ATGTCTCCTTTTCCACCTGAAGATGGGATTCCGATGAATACTACGGCGGTGGCTGTCGACAAAGATAAGAATAGCCAACACGCTGTCCGGTGGGCGATTGATCATCTTGTAATAAACAACCCACTTATTATTCTAATCCATGTTAGGCATAAAGCTAATCATAATCAACATCAGAGTGCGAGTGAAGGTGAAAATGGTGAAGCGGATTCGCAGCAGCTTTTCATTCCCTTTCGTGGATATTGTGCTCGTAAAGGGATTCACTTAAAGGAGACTGTTCTTGATGATACTGACGTTCCTAGAGCACTTGTTGACTTTGTTCACAAGAATTGTATCAACAATTTTGTTGTTGGTGCTTCAGCAAGAAATGCTCTTGCAAGGAAATTTAAAGGCCCCGACGTTCCCACCACCGTAATAAAAACTGCCCCGGAATTTTGTTCTGTGTATGTAATTTCAAAAGGGAAGATAATATCAGCAAGGGCAGCACTTCGGCCAGTGGCTAATACCGCCATGCCACCAAGACAACCATCACCACTTTCCATTCAACCAAATGTTCAACCAGATACCCATGAACATGAACATGAAAATGGAGCCAGAGGGCAACATACAAGGGAAGGATGGAAAAGTGGAGGTGCAGAAAGAGTGCTTAGTGAAAGGAATGGTAAACCAGCAAAAGCATTGATCCGCGAGAGGCCTAAAACTTCCCCTACTAATATATCAATGGAAAGTATAGATATTCCAAATCGAGGATCAAGGTCTTCGTTTAGCCGCGATTCGACATCTGATGAAAATCCGTTGACTGCACAACTGGCTTTTGGTTCAATGGATGTGAGCAACCAAAATTTAGATTTCAGTGGGGGTGCAAATATCCCAGCTGACGCTTCTGCACACTCTGCACGAGAGCTGGAGGCCGAGATGAAAAGATTGAAGCTGGAATTAAAGCAAACCATGGATATGTATAGTTCAGCCTGCAAGGAGGCAATTTCAGCCAAGAATATGGCTAGAGAGCTTAGTCAGTGGAAGCACGATGAAGCACGCAAGTTTGAAGAAGTCAGGCTAGCTGAGGAGGCAGCTCTTGCTATTGCTGAGATGGAGAAAGCCAAGTGCAAAGCTGCAATTGAAGCAGCAGAGGCCGCACAAAAACTAGCTGAGAAGGAATCCCAGAGAAGAAAACAGGCTGAAATGAAAGCCAGACGAGAGGCAGAAGAGAAAAAACGAGCACTGTCTGCTCTAGCTCAGAATGATGTCCGTTATAGAAAGTACACCATAGAGGAGATTGAGGAAGCTACTGAAAAGTTCTCTGAAAAATTGAAGATTGGTGAAGGTGGATATGGTCCTGTTTATGGAGGCAAACTAGATCATACTGCAGTTGCCATCAAGGTTTTAAGACCTGATGCTGCTCAAGGGCGGAAGCAATTCCAACAAGAGGTGGAGGTCCTCTGTTGCATTCGACATCCGAACATGGTCCTCCTCCTCGGGGCATGCCCTGAATACGGTTGCTTGGTATATGAGTACATGCATAATGGGAGCTTAGAAGATAGACTTTTCCGGAGAGGGAATACTCCTCCATTATCTTGGAGACGACGATTCAAAATAGCTGCTGAAATTGCAACTGCACTTCTTTTCCTTCACCAAGCAAAGCCAGAGCCCCTTGTGCACCGGGACCTTAAGCCAGCTAACATTCTCTTGGACCGCAATTATGTGAGCAAAATCAGTGATGTTGGTCTAGCCAGATTAGTCCCACCATCTGTAGCTGATCAAGTCACCCAATATCACTTGACTTCAGCCGCTGGAACATTTTGTTACATTGATCCTGAGTACCAACAAACAGGAAAGTTAACGACAAAGTCGGATATTTACTCATTTGGAATATTGCTACTTCAAATTATTACAGCCAAGCCTCCAATGGGTCTGGCTCACCATGTTCAAAGGGCCATTGATAAAGATAGGCTTGAGGACATGCTGGACCCTACAATGTCAGACTGTCCTATTGAAGAGGCTATAAATTTTGCAAAATTGGCATTGAAGTGCTCTGAATTGAGGAAGAGAGATAGGCCGGATCTTGGAACAGTTATAGTGCTGGAGCTTAACAGGTTAAGAGATATTGGGAGGAATTCTGAAAAACGTGAGAGTCGGCATCATGGTCATGTTCCACGTTCCATTGCGTCAAGTTCCAATACAAGGTCACAGACGCCGAATCAGGAATCAACTGATGAAGAAAGTTAG 2223 44.35 MSPFPPEDGIPMNTTAVAVDKDKNSQHAVRWAIDHLVINNPLIILIHVRHKANHNQHQSASEGENGEADSQQLFIPFRGYCARKGIHLKETVLDDTDVPRALVDFVHKNCINNFVVGASARNALARKFKGPDVPTTVIKTAPEFCSVYVISKGKIISARAALRPVANTAMPPRQPSPLSIQPNVQPDTHEHEHENGARGQHTREGWKSGGAERVLSERNGKPAKALIRERPKTSPTNISMESIDIPNRGSRSSFSRDSTSDENPLTAQLAFGSMDVSNQNLDFSGGANIPADASAHSARELEAEMKRLKLELKQTMDMYSSACKEAISAKNMARELSQWKHDEARKFEEVRLAEEAALAIAEMEKAKCKAAIEAAEAAQKLAEKESQRRKQAEMKARREAEEKKRALSALAQNDVRYRKYTIEEIEEATEKFSEKLKIGEGGYGPVYGGKLDHTAVAIKVLRPDAAQGRKQFQQEVEVLCCIRHPNMVLLLGACPEYGCLVYEYMHNGSLEDRLFRRGNTPPLSWRRRFKIAAEIATALLFLHQAKPEPLVHRDLKPANILLDRNYVSKISDVGLARLVPPSVADQVTQYHLTSAAGTFCYIDPEYQQTGKLTTKSDIYSFGILLLQIITAKPPMGLAHHVQRAIDKDRLEDMLDPTMSDCPIEEAINFAKLALKCSELRKRDRPDLGTVIVLELNRLRDIGRNSEKRESRHHGHVPRSIASSSNTRSQTPNQESTDEES 740
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 3418413 3422835 + evm.model.ptg000015l.521 HCH4g0521 542765
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
HCH4g0521 740 SMART serkin_6 432 696 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
HCH4g0521 740 FunFam U-box domain-containing protein 51 505 705 - -
HCH4g0521 740 Gene3D HUPs 12 152 IPR014729 -
HCH4g0521 740 CDD STKc_IRAK 438 698 - -
HCH4g0521 740 PANTHER OS02G0152300 PROTEIN 16 712 IPR051348 -
HCH4g0521 740 MobiDBLite consensus disorder prediction 168 263 - -
HCH4g0521 740 ProSitePatterns Serine/Threonine protein kinases active-site signature. 550 562 IPR008271 GO:0004672(InterPro)|GO:0006468(InterPro)
HCH4g0521 740 Gene3D Transferase(Phosphotransferase) domain 1 505 721 - -
HCH4g0521 740 Pfam Universal stress protein family 16 149 IPR006016 -
HCH4g0521 740 CDD STK_N 14 153 - -
HCH4g0521 740 Gene3D Phosphorylase Kinase; domain 1 409 504 - -
HCH4g0521 740 MobiDBLite consensus disorder prediction 186 211 - -
HCH4g0521 740 FunFam Adenine nucleotide alpha hydrolase-like domain kinase 404 504 - -
HCH4g0521 740 MobiDBLite consensus disorder prediction 704 740 - -
HCH4g0521 740 Pfam Protein tyrosine and serine/threonine kinase 436 690 IPR001245 GO:0004672(InterPro)|GO:0006468(InterPro)
HCH4g0521 740 MobiDBLite consensus disorder prediction 717 733 - -
HCH4g0521 740 SUPERFAMILY Protein kinase-like (PK-like) 414 691 IPR011009 -
HCH4g0521 740 ProSiteProfiles Protein kinase domain profile. 432 698 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
HCH4g0521 740 MobiDBLite consensus disorder prediction 232 263 - -
HCH4g0521 740 Coils Coil 358 413 - -
HCH4g0521 740 Coils Coil 291 318 - -
HCH4g0521 740 SUPERFAMILY Adenine nucleotide alpha hydrolases-like 12 150 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
HCH12g0288 HCH-Chr12:1615446 HCH4g0521 HCH-Chr4:3418413 3.20E-198 dispersed
HCH4g0521 HCH-Chr4:3418413 HCH7g0502 HCH-Chr7:3775906 1.80E-185 dispersed
HCH10g0548 HCH-Chr10:4428183 HCH4g0521 HCH-Chr4:3418413 1.40E-110 wgd
HCH4g0521 HCH-Chr4:3418413 HCH4g1495 HCH-Chr4:11307642 4.60E-202 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
81448 PF07714 PK_Tyr_Ser-Thr 1.30E-41 CL0016 HCH PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
HCH4g0521 - - - 0.0