Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
HCH4g0524 ATGTGTTTTGATTTTAGCAAATATGCCAACCCTTTAATTAAAAATTGGGGGTTTCCTAGGAAGGGAGGGATGATTGTGACAATGGCTGGTTCTGCAGCTGAAGGATCCCTATTTGATGGACGGCAATATGATTCCAAAATGAGTGATTTACTCGGCGGTGATGGCCAAGATTTTTTCACATCGTATGATGAGGTCTATGAAAGTTTTGATGCCATGGGCTTGCAGGAAAATCTCTTGAGAGGAATATATGCCTATGGGTTTGAGAAGCCGTCTGCTATTCAGCAAAGGGGTATTGTTCCCTTCTGTAAGGGACTTGATGTGATTCAGCAGGCACAATCTGGAACTGGAAAAACAGCTACTTTCTGCTCTGGAATTTTGCAGCAGTTGGATTATGGGCTAGTTGATTGCCAAGCATTAGTTCTTGCACCCACTCGAGAACTTGCACAACAGATTGAGAAGGTTATGCGTGCATTGGGTGATTATCTTGGTGTCAAGGTTCATGCTTGTGTTGGTGGAACCAGTGTCCGTGAAGATCAACGCATTCTCTCAAGTGGTGTCCATGTTGTTGTTGGCACCCCTGGTCGTGTGTTTGATATGCTGAGGAGGCAGTCACTTCGTCCCGATCATATTAAGATGTTTGTGCTGGATGAAGCTGATGAAATGCTTTCACGAGGGTTCAAGGATCAGATCTATGATATTTTCCAACTCCTTCCACCAAAGATTCAGGTTGGGGTTTTCTCTGCTACAATGCCCCCAGAGGCTCTAGAGATAACGAGGAAATTCATGAATAAACCTGTGCGAATTTTGGTTAAACGTGATGAGCTCACCCTTGAGGGTATCAAGCAATTTTATGTCAATGTTGATAAAGAAGACTGGAAACTTGAGACTCTTTGTGATCTTTACGAGACATTGGCAATTACCCAAAGTGTCATATTTGTGAATACCAGGCGCAAAGTAGATTGGCTCACAGATAAGATGCGCAGCCGTGACCACACTGTTTCTGCCACACATGGAGACATGGACCAAAACACTAGAGATATCATCATGCGGGAGTTTCGGTCTGGGTCATCTCGTGTTCTCATCACTACTGATCTCTTGGCTAGAGGAATTGATGTCCAACAAGTTTCCCTCGTGATAAATTATGATCTCCCTACTCAGCCAGAGAATTACCTCCATCGAATTGGGCGTAGTGGACGGTTTGGAAGGAAGGGTGTTGCCATCAATTTTGTAACCACAGATGATGAAAGGATGCTACATGACATCCAGAAGTTCTACAATGTCATGGTTGAGGAGTTGCCTGCAAATGTTGCTGACCTCATTTGA 1323 43.92 MCFDFSKYANPLIKNWGFPRKGGMIVTMAGSAAEGSLFDGRQYDSKMSDLLGGDGQDFFTSYDEVYESFDAMGLQENLLRGIYAYGFEKPSAIQQRGIVPFCKGLDVIQQAQSGTGKTATFCSGILQQLDYGLVDCQALVLAPTRELAQQIEKVMRALGDYLGVKVHACVGGTSVREDQRILSSGVHVVVGTPGRVFDMLRRQSLRPDHIKMFVLDEADEMLSRGFKDQIYDIFQLLPPKIQVGVFSATMPPEALEITRKFMNKPVRILVKRDELTLEGIKQFYVNVDKEDWKLETLCDLYETLAITQSVIFVNTRRKVDWLTDKMRSRDHTVSATHGDMDQNTRDIIMREFRSGSSRVLITTDLLARGIDVQQVSLVINYDLPTQPENYLHRIGRSGRFGRKGVAINFVTTDDERMLHDIQKFYNVMVEELPANVADLI 440
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 3434713 3437387 + evm.model.ptg000015l.524 HCH4g0524 542768
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
HCH4g0524 440 Gene3D - 57 275 IPR027417 -
HCH4g0524 440 SMART helicmild6 320 401 IPR001650 -
HCH4g0524 440 ProSiteProfiles DEAD-box RNA helicase Q motif profile. 67 95 IPR014014 GO:0003724(InterPro)
HCH4g0524 440 ProSitePatterns DEAD-box subfamily ATP-dependent helicases signature. 214 222 IPR000629 -
HCH4g0524 440 CDD SF2_C_DEAD 280 410 - -
HCH4g0524 440 FunFam Eukaryotic initiation factor 4A-II 55 274 - -
HCH4g0524 440 PANTHER ATP-DEPENDENT RNA HELICASE DBP3 64 426 - GO:0003723(PANTHER)|GO:0003724(PANTHER)
HCH4g0524 440 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 136 421 IPR027417 -
HCH4g0524 440 FunFam Eukaryotic initiation factor 4A-III 275 440 - -
HCH4g0524 440 SMART ultradead3 86 283 IPR014001 -
HCH4g0524 440 Pfam DEAD/DEAH box helicase 92 254 IPR011545 GO:0003676(InterPro)|GO:0005524(InterPro)
HCH4g0524 440 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 279 440 IPR001650 -
HCH4g0524 440 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 98 268 IPR014001 -
HCH4g0524 440 CDD DEADc_EIF4A 71 269 - -
HCH4g0524 440 Gene3D - 276 440 IPR027417 -
HCH4g0524 440 Pfam Helicase conserved C-terminal domain 293 401 IPR001650 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
HCH4g0524 HCH-Chr4:3434713 HCH7g1614 HCH-Chr7:48363434 6.40E-74 dispersed
HCH11g0353 HCH-Chr11:3339820 HCH4g0524 HCH-Chr4:3434713 4.60E-55 transposed
HCH6g0399 HCH-Chr6:7813549 HCH4g0524 HCH-Chr4:3434713 2.70E-143 transposed
HCH9g0887 HCH-Chr9:6358946 HCH4g0524 HCH-Chr4:3434713 3.20E-128 transposed
HCH4g0524 HCH-Chr4:3434713 HCH4g1493 HCH-Chr4:11299365 2.70E-226 wgd
HCH4g0524 HCH-Chr4:3434713 HCH6g0093 HCH-Chr6:1173756 4.20E-227 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
HCH4g0524 K03257 - vvi:100249159 784.252