Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
HCH4g0538 ATGAGACCAATTTTAATGAAAGGGCATGAAAGGCCCTTAACTTTTCTCAAATACAACAGAGACGGCGATCTCCTTTTCTCCTGCGCCAAAGACCATAATCCCACCGTCTGGTTCGCCGATAACGGAGAGCGCTTAGGCACTTATCGTGGCCACAACGGCGCCGTTTGGTGCTGCGATATCTCCCGAGATTCAAGGCGTCTTATTACGGGCAGTGCGGATCAAACGGCGAAGCTATGGGATGTTCAAACTGGACAGCAACTTTTTTCTTTCAATTTTGATTCTCCGGCTAGGGCTGTTGATTTTTCCGTTGGTGATAAACTTGCTGTTATTACTACTGATCCTTTCATGGAATTGCCTTCTGCTATTCATGTTAAACGTATTGCTAGTGACCCCTCTGAACAGACTGGTGACTCTGTGCTTGTTATTAAGGGTCCTCAGGGAAGAATCAATAGAGCTGTTTGGGGACCTCTCAATAAGACCATTATAAGTGCTGGAGAAGATGCGATTCTTCGTATTTGGGATTCTGAGACAGGCAAACTTCTGAAAGAAACAGACAAGGAGTCGGGTCACAAAAAACCTATAACTTCCCTTATGAAATCTGCCGATGGTTCCCATTTTATCACTGGTTCCTTGGACAAGTCTGCAAAGCTGTGGGATACTAGAACATTGACACTTATCAAGACATATGTCACAGAACGCCCAGTCAATGCAGTTGCAATGTCTCCACTTCTTGATCATGTGGTACTTGGTGGTGGACAGGATGCTTCATCAGTTACAACCACCGATCACCGTGCAGGAAAGTTTGAAGCTAAATTTTATGACAAGATCCTTCAAGAAGAGATTGGAGGTGTGAAAGGGCATTTTGGACCTATTAATGCTCTGGCCTTCAACCCCGATGGGCAAAGTTTTTCAAGTGGAGGTGAAGATGGTTATGTTAGATTGCATCATTTTGACAAGGATTACTTTTCCATCAAGATTTAA 981 43.93 MRPILMKGHERPLTFLKYNRDGDLLFSCAKDHNPTVWFADNGERLGTYRGHNGAVWCCDISRDSRRLITGSADQTAKLWDVQTGQQLFSFNFDSPARAVDFSVGDKLAVITTDPFMELPSAIHVKRIASDPSEQTGDSVLVIKGPQGRINRAVWGPLNKTIISAGEDAILRIWDSETGKLLKETDKESGHKKPITSLMKSADGSHFITGSLDKSAKLWDTRTLTLIKTYVTERPVNAVAMSPLLDHVVLGGGQDASSVTTTDHRAGKFEAKFYDKILQEEIGGVKGHFGPINALAFNPDGQSFSSGGEDGYVRLHHFDKDYFSIKI 326
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 3491909 3494324 - evm.model.ptg000015l.538 HCH4g0538 542782
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
HCH4g0538 326 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 187 222 - -
HCH4g0538 326 SMART WD40_4 1 38 IPR001680 GO:0005515(InterPro)
HCH4g0538 326 SMART WD40_4 222 262 IPR001680 GO:0005515(InterPro)
HCH4g0538 326 SMART WD40_4 41 80 IPR001680 GO:0005515(InterPro)
HCH4g0538 326 SMART WD40_4 277 316 IPR001680 GO:0005515(InterPro)
HCH4g0538 326 SMART WD40_4 177 219 IPR001680 GO:0005515(InterPro)
HCH4g0538 326 SMART WD40_4 135 174 IPR001680 GO:0005515(InterPro)
HCH4g0538 326 PANTHER EUKARYOTIC TRANSLATION INITIATION FACTOR 3 SUBUNIT I 1 323 - GO:0002183(PANTHER)|GO:0003723(PANTHER)|GO:0003743(PANTHER)|GO:0071541(PANTHER)
HCH4g0538 326 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 284 314 - -
HCH4g0538 326 PRINTS G protein beta WD-40 repeat signature 206 220 IPR020472 -
HCH4g0538 326 PRINTS G protein beta WD-40 repeat signature 161 175 IPR020472 -
HCH4g0538 326 PRINTS G protein beta WD-40 repeat signature 67 81 IPR020472 -
HCH4g0538 326 ProSiteProfiles Trp-Asp (WD) repeats profile. 48 89 IPR001680 GO:0005515(InterPro)
HCH4g0538 326 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 48 85 - -
HCH4g0538 326 ProSitePatterns Trp-Asp (WD) repeats signature. 161 175 IPR019775 -
HCH4g0538 326 Gene3D - 1 326 IPR015943 GO:0005515(InterPro)
HCH4g0538 326 Hamap Eukaryotic translation initiation factor 3 subunit I [EIF3I]. 1 326 IPR027525 GO:0003743(InterPro)|GO:0005737(InterPro)|GO:0005852(InterPro)
HCH4g0538 326 ProSiteProfiles Trp-Asp (WD) repeats profile. 187 228 IPR001680 GO:0005515(InterPro)
HCH4g0538 326 ProSiteProfiles Trp-Asp (WD) repeats profile. 6 47 IPR001680 GO:0005515(InterPro)
HCH4g0538 326 CDD WD40 7 314 - -
HCH4g0538 326 Pfam WD domain, G-beta repeat 283 314 IPR001680 GO:0005515(InterPro)
HCH4g0538 326 Pfam WD domain, G-beta repeat 6 37 IPR001680 GO:0005515(InterPro)
HCH4g0538 326 Pfam WD domain, G-beta repeat 188 219 IPR001680 GO:0005515(InterPro)
HCH4g0538 326 Pfam WD domain, G-beta repeat 42 80 IPR001680 GO:0005515(InterPro)
HCH4g0538 326 Pfam WD domain, G-beta repeat 138 174 IPR001680 GO:0005515(InterPro)
HCH4g0538 326 ProSiteProfiles Trp-Asp (WD) repeats profile. 284 314 IPR001680 GO:0005515(InterPro)
HCH4g0538 326 ProSiteProfiles Trp-Asp (WD) repeats profile. 142 183 IPR001680 GO:0005515(InterPro)
HCH4g0538 326 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 142 179 - -
HCH4g0538 326 ProSitePatterns Trp-Asp (WD) repeats signature. 67 81 IPR019775 -
HCH4g0538 326 SUPERFAMILY WD40 repeat-like 4 314 IPR036322 GO:0005515(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
HCH4g0538 HCH-Chr4:3491909 HCH5g0138 HCH-Chr5:825424 1.70E-07 dispersed
HCH7g1364 HCH-Chr7:46452099 HCH4g0538 HCH-Chr4:3491909 9.40E-08 dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
HCH4g0538 K03246 - csv:101211648 636.721