Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
HCH4g0540 ATGTTGAAGGCATCATCGTCTTTCTCTCATCGCATTTTCATCTTCTTCCTTTATTCCGCGCTTTTCATTTCTTCGTCGTCCGCTCTTCCTCTCACTGATTCGGATCAGACGGTTCTCGTTAACGCTAACGATACCGTACAATCTAGTAATGTATCAAGTTCCAGGAATAAAGAAGGAAGTTTTGCTGATATTATTGATCGTGCTTTGGAAAATGAGTTTAAAGAGAATGATCAGAACGAAGCAATTGATGCAGGAGGCTTCAACAACAGTGTAGCAGAGCAGCAGGCAGTTCTGGAGACTGTAGCAAGGGTAAAGTCAAAGAAAAATGATACGAAAGAGGAAAAGTCATTTCAGCTTCAAAATGTTTTCAATTTGGATAATGATAATAGAGCTGAAGATACCCCTACATTGATTGATAGGAAGGACAATGTCTTTATCATATCTAACTTTAAATCTAAATATCCGGTGCTGCAGCTAGACTTGAGATTGATCTCAGATTTGGTTATCGTTATTGTCTCTGCAACTTGTGGTGGCATTGCCTTTGCTTGTGCTGGACAACCAGTTATAACTGGATACCTACTAGCAGGATCTGTGATTGGACCTGGAGGGTTTAACTTTGTCAGTGAAATGGTGCAAGTTGAAACAGTAGCTCAGTTTGGTGTAATTTTTCTTCTCTTTGCTCTGGGTCTAGAATTCTCAACAACTAAGCTTCGAGTTGTTCGTGCTGTAGCTGTTCTTGGCGGCCTGCTTCAAATCTTCCTATTCATGTGCCTCAGTGGGATCACAGCTTCGTCATGTGGTGGGAGTGCTTCTGAAGGAGTTTTTGTTGGAACATTCCTATCAATGTCCTCAACGGCAGTGGTGTTGAAATTTTTGATGGAAAAGAACTCAGTAAACGCTCTTCATGGACAAGTCACGATTGGCACCCTTATCTTGCAGGATTGTGCCGTTGGCTTATTATTTGCTTTGCTTCCGGTACTGGGTGGGAACTCTGGTATCCTTCAAGGCGTGGTATCCATGAGTAAAGTGTTGGTGGTCTTGATTACTTTTTTGGTTGTACTGTCCATATTATCCCGTACGTGTGTTCCATGGCTTTTAAAGTTGATGATAAGCCTATCTTCACAGACCAATGAACTCTATCAATTGGCAGCGGTTGCATTCTGCTTGCTTGTAGCCTGGTGTAGTGATAAGTTAGGACTAAGTCTAGAATTGGGTTCCTTTGCTGCTGGAGTGATGATATCAACAACTGATCTTGCTCAACATACGCTTGAACAAATTGAACCTATTCGGAACCTTTTTGCGGCTCTTTTCCTTGCCAGCATCGGGATGCTTATCCATGTTCAATTTTTGTGGAACCATGTTGATATATTACTGGCAGCTGTTATATTGGTGATAATTGTAAAAACAATTGTAATTAGCACAGTGGTGAAAGGATTTGGTTACAACAACAGGACATCACTCCTTGTAGGAATGTCTCTGGCTCAGATAGGAGAATTTGCTTTTGTTCTTCTCAGTCGTGCTTCTAATCTACATCTAGTTGAGGGGAAGCTATATCTTCTGCTCATTGGGACAACAGCTCTCAGTTTGGTGACTACTCCTCTTCTTTTCAAGCTGATACCTGCTGTTGTTCATTTAGGCGTGCTATTGCGGTGGTTCTCACCAGACAGTCTGGTTGAGATTGGATTTAAAGGAGACATCATCCGTGCTGACAGCGTCAAGCAGCGTGTTATGTTGGTAGTCCAGGGACCTCATGATTCATGA 1761 41.96 MLKASSSFSHRIFIFFLYSALFISSSSALPLTDSDQTVLVNANDTVQSSNVSSSRNKEGSFADIIDRALENEFKENDQNEAIDAGGFNNSVAEQQAVLETVARVKSKKNDTKEEKSFQLQNVFNLDNDNRAEDTPTLIDRKDNVFIISNFKSKYPVLQLDLRLISDLVIVIVSATCGGIAFACAGQPVITGYLLAGSVIGPGGFNFVSEMVQVETVAQFGVIFLLFALGLEFSTTKLRVVRAVAVLGGLLQIFLFMCLSGITASSCGGSASEGVFVGTFLSMSSTAVVLKFLMEKNSVNALHGQVTIGTLILQDCAVGLLFALLPVLGGNSGILQGVVSMSKVLVVLITFLVVLSILSRTCVPWLLKLMISLSSQTNELYQLAAVAFCLLVAWCSDKLGLSLELGSFAAGVMISTTDLAQHTLEQIEPIRNLFAALFLASIGMLIHVQFLWNHVDILLAAVILVIIVKTIVISTVVKGFGYNNRTSLLVGMSLAQIGEFAFVLLSRASNLHLVEGKLYLLLIGTTALSLVTTPLLFKLIPAVVHLGVLLRWFSPDSLVEIGFKGDIIRADSVKQRVMLVVQGPHDS 586
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 3508392 3515326 + evm.model.ptg000015l.540 HCH4g0540 542784
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
HCH4g0540 586 Gene3D - 161 544 IPR038770 -
HCH4g0540 586 Pfam Sodium/hydrogen exchanger family 171 537 IPR006153 GO:0006812(InterPro)|GO:0015297(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro)|GO:1902600(InterPro)
HCH4g0540 586 PANTHER POTASSIUM/PROTON ANTIPORTER-RELATED 30 569 IPR045158 GO:0015386(InterPro)|GO:0071805(InterPro)|GO:1902600(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
HCH11g1158 HCH-Chr11:43800999 HCH4g0540 HCH-Chr4:3508392 2.90E-191 transposed
HCH7g0787 HCH-Chr7:13375083 HCH4g0540 HCH-Chr4:3508392 7.70E-30 transposed
HCH7g1608 HCH-Chr7:48322025 HCH4g0540 HCH-Chr4:3508392 4.50E-35 transposed
HCH4g0540 HCH-Chr4:3508392 HCH8g0658 HCH-Chr8:43354604 4.60E-245 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
HCH4g0540 K26735 - csv:101217282 979.163