Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
HCH4g0543 ATGAAGACGAATAGTTACCCATATATGATGCTTCGAGGTCCGGAGAGTGATTCGATGAATGCTTCAGTGGATATGGCAATCAACAGTTCTGCCATTGTAGAGATTCTGCCTCTTGCCATTCCTAATTCATTTGTTATGTCCAATTCATTGGACCATAATGACCAGAGCCATATTGCAGCTGGATATCCAATCTTTTCGACTTTCCGGGAATCTGATAATCATTTAGTTAATCAATCGGGGTTCATGAACTCTACTCCTGTGTCGACCGCCATGCGACCGAATAATGTGGGGGATGTATTGCATGCTTGTTTGAATCATTCTAGTAGTGCAGAGTTAGATCAGTTAGCAGGAGGGATTGCTAATACTTCTGTTTTTCAGACAACCCCTCTTGCTCCCATGATTGATTTTTATGAAAATGCAAAAGATTCAGCATTTTCAGACTCTCGGTTTCAACAATTAGAAACTTCAAGAACTTGCATCTTACACAGTTCCTCCAATGCTTCAAATTCCTCATTTTCAAGTTCTCTAAGTTGTGAAGGTGATGATAATCTCTGTAATGCAAATAACAAGTGGGAAAGTGATAGATTCCATTCTATTCAGCAACTGGCTAGGGAAGACTTGGAAAGATCAGATTTCCAACCTATGGAAAACCTGAATCAGAATGGCTGGATGTCGTCCAACACCATTAACTCCAAGTTGTGGAATGAGCTTTCTCTAAGTCTTGCCACAACACAATCTGACATCATTAGAGTATCGAATTTCTCAGACCAGTATCCGCAGTTGACCGGCGATACTCAGCCCTGCGCAAACAATACAGAATTAGGATCAAATCTGCATTCATGCAACTCCAGGGATCTTTCTCTAAGTTATGGATCTGGAAGTCCTGTTCAGCTCTCTCAAGCAATAGCAGGATCAAGATATTTTTCTGTCATCCAGGACATACTCTCGGATATTGCGAGTAATCCACTGGAAAATTCAGATCAAGTTGGTCATTCAACTTCCCCAGGTGGGTTTGTAAGTTCCCTGGATGACACTACATGCCAGTTTGGTTCAAATGGTATAGGTAGTTCTGATTCTCGAATGAACGCCCTAGGGAAAAAACTGTCCAGTGAAGCAAAGAAATCTAATTTGCTGGCTTTACTACAATTGATTGATGATAGATACACTCAGTGCTTGGATGAGATTCATACTGTCGTGTCCGCATTTCATGCTGCGACTGACTTGGATCCTCGTTTGCATACCCGTTATACTCTCCAAACAATCACTGCGGTGTATAGAAACCTGAGGGAGAAGATTACCAAATCTATTTTTGCCATTGGAGTGCATTCTAACGCAATGTGCACCAAGGAAAAGGAAGAATCCTTCGAGACGTCATTCATCCAGAAGCAATGGGCTCTCCAGCAGCTAAAAAGGAAAGATAATCAATTATGGAGGCCGCAGAGAGGCTTGCCAGAAAGATCTGTCTCGGTTTTAAGGGCGTGGATGTTTCAGAACTTTCTCCATCCGTATCCCAAGGATACAGATAAGCATTTACTTGCAGTGAAAAGTGGACTAACTAGAAATCAGGTATCTAATTGGTTCATCAATGCTCGTGTCCGTCTGTGGAAACCGTTGATTGAAGAAATGTATGCTGAAATGAGCAAAAGAAAATCGGGTCGTAATGAAGAAGGATTTGAACGAATTTGTCGAAGCCAGATAAGCATCAGCAGCGAAGAGTCGTAA 1722 41.7 MKTNSYPYMMLRGPESDSMNASVDMAINSSAIVEILPLAIPNSFVMSNSLDHNDQSHIAAGYPIFSTFRESDNHLVNQSGFMNSTPVSTAMRPNNVGDVLHACLNHSSSAELDQLAGGIANTSVFQTTPLAPMIDFYENAKDSAFSDSRFQQLETSRTCILHSSSNASNSSFSSSLSCEGDDNLCNANNKWESDRFHSIQQLAREDLERSDFQPMENLNQNGWMSSNTINSKLWNELSLSLATTQSDIIRVSNFSDQYPQLTGDTQPCANNTELGSNLHSCNSRDLSLSYGSGSPVQLSQAIAGSRYFSVIQDILSDIASNPLENSDQVGHSTSPGGFVSSLDDTTCQFGSNGIGSSDSRMNALGKKLSSEAKKSNLLALLQLIDDRYTQCLDEIHTVVSAFHAATDLDPRLHTRYTLQTITAVYRNLREKITKSIFAIGVHSNAMCTKEKEESFETSFIQKQWALQQLKRKDNQLWRPQRGLPERSVSVLRAWMFQNFLHPYPKDTDKHLLAVKSGLTRNQVSNWFINARVRLWKPLIEEMYAEMSKRKSGRNEEGFERICRSQISISSEES 573
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 3530333 3532344 + evm.model.ptg000015l.543 HCH4g0543 542787
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
HCH4g0543 573 CDD homeodomain 477 537 IPR001356 GO:0003677(InterPro)
HCH4g0543 573 ProSiteProfiles 'Homeobox' domain profile. 474 537 IPR001356 GO:0003677(InterPro)
HCH4g0543 573 Gene3D - 480 558 - -
HCH4g0543 573 Pfam Associated with HOX 302 433 IPR006563 -
HCH4g0543 573 Pfam Homeobox KN domain 494 533 IPR008422 GO:0003677(InterPro)|GO:0006355(InterPro)
HCH4g0543 573 SUPERFAMILY Homeodomain-like 479 546 IPR009057 -
HCH4g0543 573 SMART prehox3 296 434 IPR006563 -
HCH4g0543 573 PANTHER HOMEOBOX PROTEIN TRANSCRIPTION FACTORS 245 550 IPR050224 GO:0000978(PANTHER)|GO:0000981(PANTHER)|GO:0006357(PANTHER)
HCH4g0543 573 SMART HOX_1 477 541 IPR001356 GO:0003677(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
HCH4g0543 HCH-Chr4:3530333 HCH5g0533 HCH-Chr5:3672278 1.70E-34 dispersed
HCH4g0543 HCH-Chr4:3530333 HCH11g0479 HCH-Chr11:5458923 2.90E-42 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
33440 PF07526 POX 5.70E-21 No_clan HCH TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
HCH4g0543 - - - 0.0