Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
HCH4g0558 ATGACAATAATCAGCAAACCAATGCTTGTAAATCCAAATATCCAAATTCCTCAATGGGATTCCCTCGACGATCCAACGGCTGCAATCCCTTCCTTCTACTTGACCAATAATCCTTGTGTTTTCAATATCGACTCCCCGACCACGATCCACCGTTACCTCACCGCGGCGACGGATTTCGAAGACGACGTGGACACTTTCTCCTCCTCGTCCGACCATTTCCGTATGTTTGAATTCAAAGTCCGAACATGCACACGTGGGAGATCACACGATTGGACCAAATGTCCGTACGCTCACCCGGGCGAGAAAGCACGTAGAAGAGATCCGCGGATGTTTAAATATTCCGGTACGGAGTGTCCGGAATCACGAAATGGAAATGGAAGTTGTCGGAAAGGAGATTCATGCGGGTTCTCTCATGGAGTTTTTGAAAGTTGGCTTCATCCTGATCGGTACCGGACTCAGCCCTGTCGTGACGGAATTAGCTGTCGCCGTCGTGTTTGTTTCTTTGCTCATACCTCTGAGCAACTTCGGATTCCGTTGTCTAACTCGCCGCCAATGTCTCCTAATAGTCCTAGAATCGGCGATGAATTGGTTTCGTTAATGAATAATCTTCAGCTTAGGGCTCGTCGTGTTTCGAGTCTGGGTTCGGCGATTAATTCAGAGAGTTGTGGGTTTGGAGTTTTTGGGGGAGAAGAAGAAGAACCGGCGATGGAGAGAGTGGAATCTGGGAGAGATTTACGAGCACGAATGTATGCGAAATTGATGAGAGAGAATTCGTTGGAACGAGTTCGATCGTATCAGCCGATGATTTCGGATGGTTTTTGGAGCTGA 828 47.83 MTIISKPMLVNPNIQIPQWDSLDDPTAAIPSFYLTNNPCVFNIDSPTTIHRYLTAATDFEDDVDTFSSSSDHFRMFEFKVRTCTRGRSHDWTKCPYAHPGEKARRRDPRMFKYSGTECPESRNGNGSCRKGDSCGFSHGVFESWLHPDRYRTQPCRDGISCRRRVCFFAHTSEQLRIPLSNSPPMSPNSPRIGDELVSLMNNLQLRARRVSSLGSAINSESCGFGVFGGEEEEPAMERVESGRDLRARMYAKLMRENSLERVRSYQPMISDGFWS 275
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 3609386 3610213 - evm.model.ptg000015l.558 HCH4g0558 542802
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
HCH4g0558 275 Gene3D - 112 181 - -
HCH4g0558 275 ProSiteProfiles Zinc finger C3H1-type profile. 112 141 IPR000571 GO:0046872(InterPro)
HCH4g0558 275 SMART c3hfinal6 149 172 IPR000571 GO:0046872(InterPro)
HCH4g0558 275 SMART c3hfinal6 112 140 IPR000571 GO:0046872(InterPro)
HCH4g0558 275 PANTHER UNKEMPT FAMILY MEMBER 46 197 IPR045234 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
HCH4g0558 HCH-Chr4:3609386 HCH7g0132 HCH-Chr7:893918 2.20E-48 dispersed
HCH10g0519 HCH-Chr10:4214361 HCH4g0558 HCH-Chr4:3609386 2.00E-60 wgd
HCH12g0523 HCH-Chr12:3042949 HCH4g0558 HCH-Chr4:3609386 8.20E-68 wgd
HCH4g0558 HCH-Chr4:3609386 HCH8g0682 HCH-Chr8:43524013 8.90E-58 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
33442 None None None None HCH TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
HCH4g0558 - - - 0.0