Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
HCH4g0559 ATGGAAGAGTACAGCCCTCTTGGTGATAGCTCAGCTCCTAGGGGAAATTTCTTGTACTCTTCTTCTCCACCAGTCCTTGCTACTCATTCTTCTTCTCCTGGTGGCAATTTCGTAATTAGATCTTCTTCTACTAATGGAGGGTCAATTTTTGGCAATCATCAAATGGCCATAGGCATAAACAACAACACTTGCAATGTCTCCGGTGAGACTTCTGGTCAAGGGTATGAATTCGTCAAGTCGGAAACTGGTGGCGGTTCGCAATCGCAACATGTTCATGATTTTCAATACCATCTCTTGAGAGAGTACCAGATTAGCTCCGGTCAACGGCAGAAAGGAAACGACGTTGTCGATGTCGATGTCGATGTTGATGCCATGAAGGCTAAGATTGTCTCTCACTCTCAATTCTCTAACCTTCTCCAAGCTTTCTTGGACTGTCAAAAGGTCGGAGCTCCGCCAGATGTGGCTGCTCAGCTAGCTTCGGCATGCAATGAATTTGAGGAGCGGCGGCGATCTTCAATGGCATCCGGTGGGGGTTCTAAAGACCAAGAACTCGATCAATTCATGGAAGCTTACTATGGAGTGTTGGTGAAGTATCGGGAGGAGCTGACGAGGCCAATTCAAGAAGCTGCAGATTTCATGCAGAGAATTGAATCTCAGCTCATTACTCTATGCAATGGCTCCCTTCAAATCTTACCCTCTGATGACAAATGTGAAGGAATTGGGTCCTCAGAAGAGGATCAAGACAACAGCGGCGGCGGCGGCAGCGAAAAAGAGTTAACGGCGGATCAAATCGACCCTCGCGCCGAAGAGCGAGAACTCAAGAGCCATTTGCTTAAAAAGTACAGTGGCTATCTAAGTAGTCTAAAACAAGAGCTTTCAAAGAAAAAGAAAAAAGGCAAACTCCCCAAAGACGCCAGACAGGAGCTACTCCGCTGGTGGGAATTGCACAACAAATGGCCCTATCCTTCGGAGGCAGAAAAGTTGGCATTGGCGGAGTCCACAGGGCTGGACCAGAAACAAATAAACAATTGGTTCATCAACCAAAGGAAGAGGCATTGGAAGCCTTCTGAAGATATGCAGTTTATGGCCATGGATGGCTTTTATCACCCCAATGCCGCATTCTATATCGATGGGCATTATATGGGCGACGCCCACTATCGTCTGGGGCCATGA 1173 47.23 MEEYSPLGDSSAPRGNFLYSSSPPVLATHSSSPGGNFVIRSSSTNGGSIFGNHQMAIGINNNTCNVSGETSGQGYEFVKSETGGGSQSQHVHDFQYHLLREYQISSGQRQKGNDVVDVDVDVDAMKAKIVSHSQFSNLLQAFLDCQKVGAPPDVAAQLASACNEFEERRRSSMASGGGSKDQELDQFMEAYYGVLVKYREELTRPIQEAADFMQRIESQLITLCNGSLQILPSDDKCEGIGSSEEDQDNSGGGGSEKELTADQIDPRAEERELKSHLLKKYSGYLSSLKQELSKKKKKGKLPKDARQELLRWWELHNKWPYPSEAEKLALAESTGLDQKQINNWFINQRKRHWKPSEDMQFMAMDGFYHPNAAFYIDGHYMGDAHYRLGP 390
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 3620026 3623152 + evm.model.ptg000015l.559 HCH4g0559 542803
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
HCH4g0559 390 Pfam KNOX1 domain 124 166 IPR005540 GO:0003677(InterPro)|GO:0005634(InterPro)
HCH4g0559 390 Gene3D - 289 363 - -
HCH4g0559 390 PANTHER HOMEOBOX PROTEIN TRANSCRIPTION FACTORS 124 363 IPR050224 GO:0000978(PANTHER)|GO:0000981(PANTHER)|GO:0006357(PANTHER)
HCH4g0559 390 SMART ELK_2 183 203 IPR005539 GO:0003677(InterPro)
HCH4g0559 390 SMART ELK_2 272 293 IPR005539 GO:0003677(InterPro)
HCH4g0559 390 Pfam KNOX2 domain 179 224 IPR005541 GO:0003677(InterPro)|GO:0005634(InterPro)
HCH4g0559 390 ProSiteProfiles 'Homeobox' domain profile. 292 355 IPR001356 GO:0003677(InterPro)
HCH4g0559 390 Pfam Homeobox KN domain 312 351 IPR008422 GO:0003677(InterPro)|GO:0006355(InterPro)
HCH4g0559 390 SUPERFAMILY Homeodomain-like 293 368 IPR009057 -
HCH4g0559 390 Pfam ELK domain 272 293 IPR005539 GO:0003677(InterPro)
HCH4g0559 390 SMART HOX_1 294 359 IPR001356 GO:0003677(InterPro)
HCH4g0559 390 SMART KNOX1_2 123 167 IPR005540 GO:0003677(InterPro)|GO:0005634(InterPro)
HCH4g0559 390 ProSitePatterns 'Homeobox' domain signature. 330 353 IPR017970 GO:0000981(InterPro)|GO:0006355(InterPro)
HCH4g0559 390 ProSiteProfiles ELK domain profile. 272 292 IPR005539 GO:0003677(InterPro)
HCH4g0559 390 SMART KNOX2_2 174 225 IPR005541 GO:0003677(InterPro)|GO:0005634(InterPro)
HCH4g0559 390 CDD homeodomain 304 356 IPR001356 GO:0003677(InterPro)
HCH4g0559 390 MobiDBLite consensus disorder prediction 235 267 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
HCH14g0789 HCH-Chr14:35952103 HCH4g0559 HCH-Chr4:3620026 2.30E-69 dispersed
HCH1g1049 HCH-Chr1:58343048 HCH4g0559 HCH-Chr4:3620026 7.30E-67 dispersed
HCH2g0714 HCH-Chr2:50858052 HCH4g0559 HCH-Chr4:3620026 5.80E-67 dispersed
HCH4g0559 HCH-Chr4:3620026 HCH7g0260 HCH-Chr7:1790952 1.30E-65 dispersed
HCH12g0525 HCH-Chr12:3068237 HCH4g0559 HCH-Chr4:3620026 2.90E-128 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
33443 PF03791 KNOX2 1.60E-22 No_clan HCH TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
HCH4g0559 - - - 0.0