Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
HCH4g0567 ATGGCTCCTTGGTGGGGAAAAGAAAGCCATAAGGCGAAGGGAACCCCTGTTGTTGTGAAAATGGAGAATCCCAATTGGTCTATGGTGGAACTTGAAGCTCCATCAGAAGATGATTTTATCATCACTGAGTCACCAGGCCGAGTTAGAGACAAAGGAAGAGGCAAGAATGCTAAACAGCTCACTTGGGTTCTCCTCCTTAAAGCTCATAAGGCTGCTGGTTGTCTAACCTCCCTCGGTTCTGCATTGGTCAATGTCGCTGCTGCCGTTCGACGCCGTGTCGCTTCGGGCCGGACTGATGTCGATGCCGATGTCGCCGACGGCAGGGAGAGGGAGAGGGAGAACCCAACAGTGAAAACTAGGTTCTATCTGTTTATCAAGATGTTTCTTTGGTTGTCGGTGGTTTTGCTAGGGTTTGAGGTGGCAGCTTATTTCAAAGGGTGGCATTTTAGAACACCACATCTTGAATTGGAGTATTTGTGGAAAGCTCCATTTGGGGTAAAGGATGTTTTTGATTCGTTATATTCTAAATGGGTTTTGATTAGGGTGGAATATCTAGCTCCCCCACTTCAATTTTTAGCCAATGTCTGTATAGTGCTGTTCCTTATTCAGACTTTGGATAGACTTGTTCTTTGTCTGGGTTGTTTTTGGATCAAATTCAAGAAAATTAAACCTGTCCCTAGTGTTGGTGCCTTGGATCTTGAATCTGGTGAGACTGGTTACTTCCCCATGGTTCTTATTCAGATCCCAATGTGCAATGAAAAAGAGGTTTATCAGCAATCAATTGCTGCTGTCTGCAACTTGGACTGGCCAAAAGCCAATTTACTGATTCAGGTTCTTGATGACTCGGATGACCCGACAACCCAAATGCTGATCAGAGAGGAGGTCCATAAATGGCAGCGAGATGGTGCCCGTATTGAGTACCGGCATCGGGTGATCAGAGAGGGTTATAAGGCTGGCAATCTCAAGTCTGCCATGAATTGCAACTATGTCAAAGATTATGAATTTGTCGCAATCTTTGATGCCGATTTTCAGCCTACTTCTGATTTCCTCAAAAGAACAGTTCCCCATTTCAAGGATAATGAGGAACTAGGATTAGTTCAAGCAAGGTGGTCCTTTGTGAACAAGGATGAGAATTTGTTGACAAGGCTGCAGAATATTAACTTAGCCTTCCATTTTGAGGTGGAGCAGCAAGTGAATGGTGTTTTTCTCAATTTCTTTGGGTTCAATGGAACGGCTGGTGTTTGGAGGATAAAGGCTCTTGAAGATGCTGGTGGTTGGTTGGAGAGAACCACTGTCGAGGATATGGATATTGCTGTTCGTGCTCATCTTCATGGATGGAAATTCATATTCCTCAATGATGTAGAGTGCCAATGTGAATTACCGGAATCATATGAAGCATATAGAAAACAACAGCACAGATGGCACTCTGGACCAATGCAATTGTTCCGTCTCTGTTTGCCTGCCATATTTCGATCAAAGATTGGCATATCGAAGAAATTCAATTTGATATTCCTATTCTTTCTCCTTCGGAAACTGATACTACCATTTTATTCTTTTACCCTTTTCTGCATAATTCTTCCAATGACAATGTTCATTCCCGAGGCCGAGTTACCTGCGTGGGTTGTATGCTACATTCCAGCTACCATGTCTTTTCTCAACATTCTTCCTGCTCCCAAATCCTTTCCCTTCATTGTCCCTTACCTCCTTTTTGAGAACACAATGTCAGTTACTAAGTTCAATGCAATGGTCTCGGGACTTTTCCAGCTTGGTAGTGCATATGAATGGGTCGTTACCAAGAAATCGGGCCGCTCTTCTGAGGGTGATCTTCTCTCTATGGTCCAGAAAGACACAAAACATGAAAAGAGTGTCTCAGCGTCGGTGAACAATCTTGATGAGATTGAATTAATCCAAAAACAAGAAAAGATTTTGTCAAGGAAGAAGCATAACAGGATATATATGAAGGAGCTAGCATTGGCTTTCCTTCTTCTAACAGCTTCAGCTAGGAGCCTCCTGTCAGCTCAAGGGATTCATTTCTACTTCTTGCTGTTTCAGGGAGTATCTTTCCTGCTCGTTGGGTTAGACTTGATCGGTGAGCAGGTTGTTTGA 2106 43.49 MAPWWGKESHKAKGTPVVVKMENPNWSMVELEAPSEDDFIITESPGRVRDKGRGKNAKQLTWVLLLKAHKAAGCLTSLGSALVNVAAAVRRRVASGRTDVDADVADGRERERENPTVKTRFYLFIKMFLWLSVVLLGFEVAAYFKGWHFRTPHLELEYLWKAPFGVKDVFDSLYSKWVLIRVEYLAPPLQFLANVCIVLFLIQTLDRLVLCLGCFWIKFKKIKPVPSVGALDLESGETGYFPMVLIQIPMCNEKEVYQQSIAAVCNLDWPKANLLIQVLDDSDDPTTQMLIREEVHKWQRDGARIEYRHRVIREGYKAGNLKSAMNCNYVKDYEFVAIFDADFQPTSDFLKRTVPHFKDNEELGLVQARWSFVNKDENLLTRLQNINLAFHFEVEQQVNGVFLNFFGFNGTAGVWRIKALEDAGGWLERTTVEDMDIAVRAHLHGWKFIFLNDVECQCELPESYEAYRKQQHRWHSGPMQLFRLCLPAIFRSKIGISKKFNLIFLFFLLRKLILPFYSFTLFCIILPMTMFIPEAELPAWVVCYIPATMSFLNILPAPKSFPFIVPYLLFENTMSVTKFNAMVSGLFQLGSAYEWVVTKKSGRSSEGDLLSMVQKDTKHEKSVSASVNNLDEIELIQKQEKILSRKKHNRIYMKELALAFLLLTASARSLLSAQGIHFYFLLFQGVSFLLVGLDLIGEQVV 701
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 3711248 3713826 + evm.model.ptg000015l.567 HCH4g0567 542811

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
HCH4g0567 701 Gene3D Spore Coat Polysaccharide Biosynthesis Protein SpsA; Chain A 235 459 IPR029044 -
HCH4g0567 701 Pfam Glycosyl transferase family group 2 336 542 IPR001173 -
HCH4g0567 701 FunFam probable xyloglucan glycosyltransferase 5 235 460 - -
HCH4g0567 701 SUPERFAMILY Nucleotide-diphospho-sugar transferases 244 538 IPR029044 -
HCH4g0567 701 PANTHER GLUCOMANNAN 4-BETA-MANNOSYLTRANSFERASE 9 171 700 - GO:0005794(PANTHER)|GO:0016757(PANTHER)
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
HCH4g0567 - - - - 0.0
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
HCH13g0797 HCH-Chr13:7679576 HCH4g0567 HCH-Chr4:3711248 8.10E-238 dispersed
HCH2g1239 HCH-Chr2:54742235 HCH4g0567 HCH-Chr4:3711248 7.50E-109 dispersed
HCH4g0567 HCH-Chr4:3711248 HCH5g1039 HCH-Chr5:11867337 1.00E-243 dispersed
HCH12g0532 HCH-Chr12:3125612 HCH4g0567 HCH-Chr4:3711248 0.00E+00 wgd
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
HCH2g0407 . 210 374 REM Transcription Factor Family AT1G49480 70.5 1.1e-58 223.4
HCH12g0291 . 1 693 REM Transcription Factor Family AT2G24630 78.0 0.0e+00 1102.0
HCH12g0532 . 1 701 REM Transcription Factor Family AT2G24630 64.5 4.0e-264 907.5
HCH13g0797 . 6 668 REM Transcription Factor Family AT2G24630 67.0 1.5e-258 889.0
HCH4g0567 . 5 699 REM Transcription Factor Family AT2G24630 64.5 8.0e-257 883.2
HCH5g1039 . 4 690 REM Transcription Factor Family AT2G24630 62.6 1.9e-245 845.5
HCH12g0291 . 1 693 REM Transcription Factor Family AT2G24630 78.0 0.0e+00 1102.0
HCH12g0532 . 1 701 REM Transcription Factor Family AT2G24630 64.5 4.0e-264 907.5
HCH13g0797 . 6 668 REM Transcription Factor Family AT2G24630 67.0 1.5e-258 889.0
HCH4g0567 . 5 699 REM Transcription Factor Family AT2G24630 64.5 8.0e-257 883.2
HCH5g1039 . 4 690 REM Transcription Factor Family AT2G24630 62.6 1.9e-245 845.5
HCH12g0291 . 1 693 REM Transcription Factor Family AT2G24630 78.0 0.0e+00 1102.0
HCH12g0532 . 1 701 REM Transcription Factor Family AT2G24630 64.5 4.0e-264 907.5
HCH13g0797 . 6 668 REM Transcription Factor Family AT2G24630 67.0 1.5e-258 889.0
HCH4g0567 . 5 699 REM Transcription Factor Family AT2G24630 64.5 8.0e-257 883.2
HCH5g1039 . 4 690 REM Transcription Factor Family AT2G24630 62.6 1.9e-245 845.5
HCH2g0407 . 210 374 REM Transcription Factor Family AT1G49480 70.5 1.1e-58 223.4
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0002112 2 2 2 2 2 2 3 2 2 2 2 2 3 2 2 3 2 4 2 2 2 2 2 2 2 2 2 3 2 1 65