Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
HCH4g0567 ATGGCTCCTTGGTGGGGAAAAGAAAGCCATAAGGCGAAGGGAACCCCTGTTGTTGTGAAAATGGAGAATCCCAATTGGTCTATGGTGGAACTTGAAGCTCCATCAGAAGATGATTTTATCATCACTGAGTCACCAGGCCGAGTTAGAGACAAAGGAAGAGGCAAGAATGCTAAACAGCTCACTTGGGTTCTCCTCCTTAAAGCTCATAAGGCTGCTGGTTGTCTAACCTCCCTCGGTTCTGCATTGGTCAATGTCGCTGCTGCCGTTCGACGCCGTGTCGCTTCGGGCCGGACTGATGTCGATGCCGATGTCGCCGACGGCAGGGAGAGGGAGAGGGAGAACCCAACAGTGAAAACTAGGTTCTATCTGTTTATCAAGATGTTTCTTTGGTTGTCGGTGGTTTTGCTAGGGTTTGAGGTGGCAGCTTATTTCAAAGGGTGGCATTTTAGAACACCACATCTTGAATTGGAGTATTTGTGGAAAGCTCCATTTGGGGTAAAGGATGTTTTTGATTCGTTATATTCTAAATGGGTTTTGATTAGGGTGGAATATCTAGCTCCCCCACTTCAATTTTTAGCCAATGTCTGTATAGTGCTGTTCCTTATTCAGACTTTGGATAGACTTGTTCTTTGTCTGGGTTGTTTTTGGATCAAATTCAAGAAAATTAAACCTGTCCCTAGTGTTGGTGCCTTGGATCTTGAATCTGGTGAGACTGGTTACTTCCCCATGGTTCTTATTCAGATCCCAATGTGCAATGAAAAAGAGGTTTATCAGCAATCAATTGCTGCTGTCTGCAACTTGGACTGGCCAAAAGCCAATTTACTGATTCAGGTTCTTGATGACTCGGATGACCCGACAACCCAAATGCTGATCAGAGAGGAGGTCCATAAATGGCAGCGAGATGGTGCCCGTATTGAGTACCGGCATCGGGTGATCAGAGAGGGTTATAAGGCTGGCAATCTCAAGTCTGCCATGAATTGCAACTATGTCAAAGATTATGAATTTGTCGCAATCTTTGATGCCGATTTTCAGCCTACTTCTGATTTCCTCAAAAGAACAGTTCCCCATTTCAAGGATAATGAGGAACTAGGATTAGTTCAAGCAAGGTGGTCCTTTGTGAACAAGGATGAGAATTTGTTGACAAGGCTGCAGAATATTAACTTAGCCTTCCATTTTGAGGTGGAGCAGCAAGTGAATGGTGTTTTTCTCAATTTCTTTGGGTTCAATGGAACGGCTGGTGTTTGGAGGATAAAGGCTCTTGAAGATGCTGGTGGTTGGTTGGAGAGAACCACTGTCGAGGATATGGATATTGCTGTTCGTGCTCATCTTCATGGATGGAAATTCATATTCCTCAATGATGTAGAGTGCCAATGTGAATTACCGGAATCATATGAAGCATATAGAAAACAACAGCACAGATGGCACTCTGGACCAATGCAATTGTTCCGTCTCTGTTTGCCTGCCATATTTCGATCAAAGATTGGCATATCGAAGAAATTCAATTTGATATTCCTATTCTTTCTCCTTCGGAAACTGATACTACCATTTTATTCTTTTACCCTTTTCTGCATAATTCTTCCAATGACAATGTTCATTCCCGAGGCCGAGTTACCTGCGTGGGTTGTATGCTACATTCCAGCTACCATGTCTTTTCTCAACATTCTTCCTGCTCCCAAATCCTTTCCCTTCATTGTCCCTTACCTCCTTTTTGAGAACACAATGTCAGTTACTAAGTTCAATGCAATGGTCTCGGGACTTTTCCAGCTTGGTAGTGCATATGAATGGGTCGTTACCAAGAAATCGGGCCGCTCTTCTGAGGGTGATCTTCTCTCTATGGTCCAGAAAGACACAAAACATGAAAAGAGTGTCTCAGCGTCGGTGAACAATCTTGATGAGATTGAATTAATCCAAAAACAAGAAAAGATTTTGTCAAGGAAGAAGCATAACAGGATATATATGAAGGAGCTAGCATTGGCTTTCCTTCTTCTAACAGCTTCAGCTAGGAGCCTCCTGTCAGCTCAAGGGATTCATTTCTACTTCTTGCTGTTTCAGGGAGTATCTTTCCTGCTCGTTGGGTTAGACTTGATCGGTGAGCAGGTTGTTTGA 2106 43.49 MAPWWGKESHKAKGTPVVVKMENPNWSMVELEAPSEDDFIITESPGRVRDKGRGKNAKQLTWVLLLKAHKAAGCLTSLGSALVNVAAAVRRRVASGRTDVDADVADGRERERENPTVKTRFYLFIKMFLWLSVVLLGFEVAAYFKGWHFRTPHLELEYLWKAPFGVKDVFDSLYSKWVLIRVEYLAPPLQFLANVCIVLFLIQTLDRLVLCLGCFWIKFKKIKPVPSVGALDLESGETGYFPMVLIQIPMCNEKEVYQQSIAAVCNLDWPKANLLIQVLDDSDDPTTQMLIREEVHKWQRDGARIEYRHRVIREGYKAGNLKSAMNCNYVKDYEFVAIFDADFQPTSDFLKRTVPHFKDNEELGLVQARWSFVNKDENLLTRLQNINLAFHFEVEQQVNGVFLNFFGFNGTAGVWRIKALEDAGGWLERTTVEDMDIAVRAHLHGWKFIFLNDVECQCELPESYEAYRKQQHRWHSGPMQLFRLCLPAIFRSKIGISKKFNLIFLFFLLRKLILPFYSFTLFCIILPMTMFIPEAELPAWVVCYIPATMSFLNILPAPKSFPFIVPYLLFENTMSVTKFNAMVSGLFQLGSAYEWVVTKKSGRSSEGDLLSMVQKDTKHEKSVSASVNNLDEIELIQKQEKILSRKKHNRIYMKELALAFLLLTASARSLLSAQGIHFYFLLFQGVSFLLVGLDLIGEQVV 701
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 3711248 3713826 + evm.model.ptg000015l.567 HCH4g0567 542811
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
HCH4g0567 701 Gene3D Spore Coat Polysaccharide Biosynthesis Protein SpsA; Chain A 235 459 IPR029044 -
HCH4g0567 701 Pfam Glycosyl transferase family group 2 336 542 IPR001173 -
HCH4g0567 701 FunFam probable xyloglucan glycosyltransferase 5 235 460 - -
HCH4g0567 701 SUPERFAMILY Nucleotide-diphospho-sugar transferases 244 538 IPR029044 -
HCH4g0567 701 PANTHER GLUCOMANNAN 4-BETA-MANNOSYLTRANSFERASE 9 171 700 - GO:0005794(PANTHER)|GO:0016757(PANTHER)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
HCH13g0797 HCH-Chr13:7679576 HCH4g0567 HCH-Chr4:3711248 8.10E-238 dispersed
HCH2g1239 HCH-Chr2:54742235 HCH4g0567 HCH-Chr4:3711248 7.50E-109 dispersed
HCH4g0567 HCH-Chr4:3711248 HCH5g1039 HCH-Chr5:11867337 1.00E-243 dispersed
HCH12g0532 HCH-Chr12:3125612 HCH4g0567 HCH-Chr4:3711248 0.00E+00 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
HCH4g0567 - - - 0.0