Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
HCH4g0569 ATGAAGTCCATGAATGAGAATAATAATAATAATAATAATAATAACAATCATTCTTGGTTGGGATTTTCTCTCTCTCCCCATATGAAAATGGAAGTTGCTTCTGATCCTCACTACCACCACCACCATACGGCGGCCGACACGGAGGCGGTTACTCCTCCGTTTTATTTATCACCCCATTACGGCGGCGCTGAAATATTTTATGGAGAAAATGCTTCTCTTCATCATTCTACTTCTTCCTTATCTGTAATGCCACTTAAATCGGATGGCTCTCTTTGTATCATGGAAGCTCTTACTAGATCACAAACTGAAGCTATGGTGCCAAGTTCTTCTCCTTCACCAAAGCTTGAAGATTTTCTAGGTGGTGCAACAATGGGTCGTGGCTATTTCGATCAAAATGCCGAACCCGAATCGGACGGCCGTGAACATTCTCTAGACCTTCTTCACCGGCCGCCGATTCGTGGTCATCAAGAAGAACAACAACAACAAATTCTGTTGCAAAATACCCATCATCAATACTATTCTGGATTAATCAATAATTGTGATTCACAAATGCCTCAGATTTCAACTCAGGATGATGAAATTTCTGGTTTTAGAAACTGGGTTTCGAGGAATCAGTACGCGGCGGCGCAGAATACTTTGGAGCAGCATATCAACGGTGGAAATGTGATGAATGAAAGTAGTGGGACCGGCTGCATTGGTGGAATGAGCTGCGGGGAGCTGCAGTCGCTTACCCTGTCGATGAGCCCCGGTTCGCAATCGAGTTCGTTTACCGCTCCCTCCGGCCAGATTTCTCCGCCGGGAATGGAGTGTGTAGCTATGGAAATTACGAAGAAGAGAGGTCCAGGGAAAGAGAAGCAGCCGGTTCATCGGAAGTCTATCGACACGTTCGGTCAGCGAACGTCTCAGTATCGAGGAGTTACGAGACATAGATGGACTGGAAGATATGAAGCTCATTTGTGGGACAATAGTTGCAAGAAAGAGGGCCAAACTAGGAAAGGAAGACAAGTTTATCTTGGTGGCTATGACATGGAAGAAAAAGCTGCAAGAGCTTATGATTTAGCAGCCCTTAAGTACTGGGGACCCTCGACCCATATAAATTTTCCATTGGAGAATTATCAGACTGAACTTGAAGAAATGAAGAACATGAGCCGCCAAGAATATGTTGCTCACTTGAGAAGGAAAAGTAGTGGTTTTTCTAGGGGTGCTTCGGTTTTCAGAGGAGTAACGAGACATCATCAACATGGAAGATGGCAAGCGAGAATTGGTAGAGTTGCCGGAAACAAGGACCTTTATCTTGGGACTTTCAGCACGCAAGAGGAAGCGGCCGAAGCATATGACATTGCAGCAATCAAATTCCGCGGCGTAAATGCTGTCACCAACTTTGACGTTTCAAGATACGACGTAGAGAGAATCATGGCCAGCAACACACTACTGGCGGGAGAGCTTGCCAGAAGGAATAAGGATACCGAGCCGACCAACGCTGCGACTGCGGTCGGATACGACACCGCATTGGCACCGACCAATGGCGGTATCAATTCAGATGTCAATAATTGCGCCAATGGGAATAATGGTTCTGCGGATTGGAAGATGACTTTGTATCAGCAGCAACAGGCAACTGCCTCGGCAGCTTGTGTTGATGAATCCACGGATCACAAGAGCTATCGAAACGCTTCGTTTCCGATGGCGTTGCAAGGACTAATCGGAATCGAATCGATGCATTCGAGAAGCCATGGCATTGGAGATCATGATGAAGTGAGCAAACAAGTGAATACTCATTTTTCGAATTCGTCATCTCTAGTGACGAGTTTGAGTAGCTCAAGAGAAGGAAGTCCGGATAAGGCAAACGCCTCGATGTCGTTTGCGAAGCAGCCGCCGCTAATGGTGACGAAGCAGATCAGTACGACAAATGGGATAAGTTCTTGGTACCCATCGCCTTCGCAGCTCAGGCCTGCTGCCATCTCCATTGCTCACTTGCCTGTTTTCGCTGCCTGGAATGACACTTAG 2004 46.51 MKSMNENNNNNNNNNNHSWLGFSLSPHMKMEVASDPHYHHHHTAADTEAVTPPFYLSPHYGGAEIFYGENASLHHSTSSLSVMPLKSDGSLCIMEALTRSQTEAMVPSSSPSPKLEDFLGGATMGRGYFDQNAEPESDGREHSLDLLHRPPIRGHQEEQQQQILLQNTHHQYYSGLINNCDSQMPQISTQDDEISGFRNWVSRNQYAAAQNTLEQHINGGNVMNESSGTGCIGGMSCGELQSLTLSMSPGSQSSSFTAPSGQISPPGMECVAMEITKKRGPGKEKQPVHRKSIDTFGQRTSQYRGVTRHRWTGRYEAHLWDNSCKKEGQTRKGRQVYLGGYDMEEKAARAYDLAALKYWGPSTHINFPLENYQTELEEMKNMSRQEYVAHLRRKSSGFSRGASVFRGVTRHHQHGRWQARIGRVAGNKDLYLGTFSTQEEAAEAYDIAAIKFRGVNAVTNFDVSRYDVERIMASNTLLAGELARRNKDTEPTNAATAVGYDTALAPTNGGINSDVNNCANGNNGSADWKMTLYQQQQATASAACVDESTDHKSYRNASFPMALQGLIGIESMHSRSHGIGDHDEVSKQVNTHFSNSSSLVTSLSSSREGSPDKANASMSFAKQPPLMVTKQISTTNGISSWYPSPSQLRPAAISIAHLPVFAAWNDT 667
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 3729795 3732749 - evm.model.ptg000015l.569 HCH4g0569 542813
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
HCH4g0569 667 FunFam AP2-like ethylene-responsive transcription factor ANT 301 370 - -
HCH4g0569 667 SUPERFAMILY DNA-binding domain 301 370 IPR016177 GO:0003677(InterPro)
HCH4g0569 667 PANTHER AP2-LIKE ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR 155 534 - -
HCH4g0569 667 CDD AP2 403 464 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
HCH4g0569 667 CDD AP2 301 368 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
HCH4g0569 667 Gene3D AP2/ERF domain 301 370 IPR036955 GO:0003700(InterPro)|GO:0006355(InterPro)
HCH4g0569 667 Gene3D AP2/ERF domain 404 464 IPR036955 GO:0003700(InterPro)|GO:0006355(InterPro)
HCH4g0569 667 PRINTS Ethylene responsive element binding protein signature 303 314 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
HCH4g0569 667 PRINTS Ethylene responsive element binding protein signature 444 464 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
HCH4g0569 667 ProSiteProfiles AP2/ERF domain profile. 404 462 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
HCH4g0569 667 ProSiteProfiles AP2/ERF domain profile. 302 368 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
HCH4g0569 667 SMART rav1_2 302 374 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
HCH4g0569 667 SMART rav1_2 404 468 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
HCH4g0569 667 SUPERFAMILY DNA-binding domain 403 464 IPR016177 GO:0003677(InterPro)
HCH4g0569 667 MobiDBLite consensus disorder prediction 598 621 - -
HCH4g0569 667 FunFam AP2-like ethylene-responsive transcription factor 403 464 - -
HCH4g0569 667 Pfam AP2 domain 302 360 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
HCH4g0569 667 Pfam AP2 domain 403 454 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
HCH4g0569 HCH-Chr4:3729795 HCH8g1037 HCH-Chr8:46330493 2.10E-92 dispersed
HCH6g0075 HCH-Chr6:918144 HCH4g0569 HCH-Chr4:3729795 9.20E-107 transposed
HCH12g0534 HCH-Chr12:3144113 HCH4g0569 HCH-Chr4:3729795 1.20E-163 wgd
HCH14g0388 HCH-Chr14:32888056 HCH4g0569 HCH-Chr4:3729795 4.90E-152 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
33446 PF00847 AP2 1.50E-13 CL0081 HCH TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
HCH4g0569 K09285 - csv:101212797 898.656