Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
HCH4g0575 ATGATAGAAGAGTTAGAATCGATAGAAATCCCATCAGTTTTCATCTGCCCGATTTCACTCGAACCAATGCAAGATCCAGTCACCCTTTGCTCCGGGCAGACCTACGAAAGATCCAACATTCAAAAATGGTTTTCTTTAGGCCATTTGACATGTCCCACAACAATGCAAGAATTATGGGACGATTCCGTTACTCCAAATAAAACCCTTCATCAATTAATCCTCACTTGGTTTTCTCAAAAGTATTTGTCTTTGAAAAAGAAATCAGAAGATGTTCAAGGAAGGGTTTTGGAGCTTTTAGATTCTTTGAAAAAAGTCAAAGGTCAAACTAGAATTCAGACACTCAAAGATCTCCGACATGTCGTAACCGCTCATTTGTCGGCCAAAAAAACGGTCGTCGACAACAATGGCGTTTGTTTGATTTCGTCTCTTTTAGGTTCTTTCACTTCTCACGTAGTTGGGTCAGAAGCCGTCGGGATTCTCGTGAATTTGGATCTCAACTCGGAGTTAAAAAGGAATCTAATTCAACCAATGAGAATGTCTTTGATTGCTGATTTACTAAACGAAGGGTCAATAGAAACCAAGATAAACTGCACGAGATTCATCACAATGTTAATCGACGGTGAGGATTTCAAGACGGAATCGATCTCAAGTTTGAGTCTTTTGGTCGGATTGTTGAGAATGGTGAAAGATCAAAGACACCCAAATGGGGTATTCGCCGGACTCCGGTTACTCCGTACACTCGGCTCCGACGAAGGAATTAAAAAACAACTGGTCAGCATTGGAGCCGTGGCGAAAATCGGCGGCGTTTTGTCGAATTTAAACGTGGAGAGTTTGGAATCGGCGCTTTATATATTGGATGGTTTATCATCGATTAGAGAAGGGAGATTGGCTTTGAAAGATTGCGAAGAAACGATAACGAATTTAGTGAAATTGCTAATGAGGGTATCGGAAATATGTACGAAATTTGCGTTGTCGATATTGTGGGCGGTGTTTAAATTGGCGCCGGAGGAATGTGCGTTGTTGGCGGTGGAGGCGGGATTGGCGGCGAAGTTATTGCTTGTGATTCAAAGTGGCTGTAATCAAGAGGTGAAGCAGAGATCGGCGGAGTTGTTGAAATTGTGTAGTTTGAATTGCCCGGATTCTATGTTCATTTCTAAGTGTAAGCTTACCAGAACTATACAATAA 1185 41.69 MIEELESIEIPSVFICPISLEPMQDPVTLCSGQTYERSNIQKWFSLGHLTCPTTMQELWDDSVTPNKTLHQLILTWFSQKYLSLKKKSEDVQGRVLELLDSLKKVKGQTRIQTLKDLRHVVTAHLSAKKTVVDNNGVCLISSLLGSFTSHVVGSEAVGILVNLDLNSELKRNLIQPMRMSLIADLLNEGSIETKINCTRFITMLIDGEDFKTESISSLSLLVGLLRMVKDQRHPNGVFAGLRLLRTLGSDEGIKKQLVSIGAVAKIGGVLSNLNVESLESALYILDGLSSIREGRLALKDCEETITNLVKLLMRVSEICTKFALSILWAVFKLAPEECALLAVEAGLAAKLLLVIQSGCNQEVKQRSAELLKLCSLNCPDSMFISKCKLTRTIQ 394
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 3792405 3793589 - evm.model.ptg000015l.575 HCH4g0575 542819
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
HCH4g0575 394 ProSiteProfiles U-box domain profile. 9 83 IPR003613 GO:0004842(InterPro)|GO:0016567(InterPro)
HCH4g0575 394 SMART Ubox_2 13 76 IPR003613 GO:0004842(InterPro)|GO:0016567(InterPro)
HCH4g0575 394 Pfam U-box domain 10 80 IPR003613 GO:0004842(InterPro)|GO:0016567(InterPro)
HCH4g0575 394 SUPERFAMILY ARM repeat 181 382 IPR016024 -
HCH4g0575 394 CDD RING-Ubox_PUB 11 63 IPR045210 -
HCH4g0575 394 Gene3D - 83 393 IPR011989 -
HCH4g0575 394 SUPERFAMILY RING/U-box 4 80 - -
HCH4g0575 394 SUPERFAMILY ARM repeat 98 211 IPR016024 -
HCH4g0575 394 PANTHER WDSAM1 PROTEIN 6 387 IPR045185 GO:0061630(InterPro)
HCH4g0575 394 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 9 82 IPR013083 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
HCH2g0261 HCH-Chr2:38962933 HCH4g0575 HCH-Chr4:3792405 5.50E-24 dispersed
HCH4g0575 HCH-Chr4:3792405 HCH7g1497 HCH-Chr7:47577991 2.00E-26 dispersed
HCH12g0544 HCH-Chr12:3196972 HCH4g0575 HCH-Chr4:3792405 6.20E-157 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
HCH4g0575 - - - 0.0