Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
HCH4g0584 ATGCTTTGTGCTTGTTCAGGAGAGCAATTCAAATTCGAAGAACCGCCGCCGCAGTCGCCGGAGTCTTTAGCGACGAGGGATTTTTCTGCCAGTTGCCTTTCCTCAAGGACTGGTGGAGATTGGGATTCGAAATTTGATGATTCTCAAGTTGATGAAGTTGAATCCTCATTAAAAGAAGCCCTCTCATTAAACTATGAGGAAGCTAGAGCTTTGTTAGGGAGGCTTGAATATCAAAGAGGAAATTATGATGCCGCCCTTCAGGTTTTTCAAGGTATAGACATTAGACCTTTGATGCCAAGGATGATTAAGGCAATTAATCAAAGGATTAGAGAGGAAAAGCCTTCTCTTAAAGGCGATAATGTGGCGCCCGCTAGTGTAATGTCGATGCATTCTGTTAGTCTATTACTTGAAGCAATGTTACTCAAGGCAAAATCAATGGAGGAACTTGGTAGATACATAGAGTCTGCAAAAGAGTGCAGGATAATTCTTGATACTGTAGAATCGGCGTTGCCTAATGGAATGCCAGATTGCGTCGGTGAAGAGTGCAAATTGCAGGAAATGTTTCACAAAGCTTTGGAGTTACTTCCTACTTTATGGATTAAGGGAGGCTATATCGATGAGGCTATAAATGCCTATCGTCGGGGTCTTGTTAAATCATGGAATTTAGATCCGAATAAGTTAGCTGCCATACAGAAAGAATTAGCTGGCATGTTACTCTATGGAGGGGTTGAAGCAAGTCTTCCCCTTAAGTTTCATGTATTTGGTCCGAGTACGCCTAAAAATAATATAGAAGAGGCAATCCTTTTGCTTCTAATACTCATGAAGAAAGTAGTGATGCAGGAAATAAGTTGGGATTCAGAAATTATAAATCATCTGACTTACGCTCTGTCTGTCACTAAACAATTTGAATTACTCGCGGAGCATGTCGAGCAGATCCTTCCTGGAATATTTAGTAGAGCTGAGAGGTGGTACTTTCTTGCTCTTTGTTACAATGCAGCAGGACAGAATGAAGTAGCTCTAAACCTTTTAATGAAAGTTTGTGGTTTCTCTGAAGTAAAGCACAGACCCCATTTTCCTTCTTTTTTGTTGCTTGCAAAATTGTGTTCTGAGGATACGAAATATGCACGTGATGGAATTAAACTTGCTCACAGAATGATTGATTTGGCAAATGACCAAAGTAAACATTTCATTTCTGAAGCCCACAGATTTTTAGGTATTTGTTATGGAAATGCAGCTAGAACTTCTGTATCAGATTCTGAAAGAATTCTTTTCCGGAAAGAATCACTCAACTCCCTAAGAGTTTCTGCTCTCGGCGGGAAGCACAATCCTGAACTGATGTTCAACATCAGCTTGGAAAATGCTGTACAAAGAAATCTTGATGTCGCCTTCTACAGTGCAATGTCATACACAAATACAGTGGCTGATAGTTCTGGAAGAGGTTGGAAGCTGTTGACCCTCATACTTTCAGCTGAGCAACGGCTCAAGGATGCTGAAACTATAGTTGATTTTGCTTTGGATGAAGTTGAGAGGATGGATCAATTGGATTTTCTTCGTTTGAAAGCTGTAATTAAACTTGCTCAGGAACAGCCAAAGCAAGCAATAGAAACCTACAGAATCTTGCTTGCACTAATTCAAGCACGAGGAGACCTTCAGCATCAGACTAGGAATTTTTACCAACCCAAGGACACCGAACTAGAGGCAGCAGCAGACAGTAACTTGGAACGGGAAGCCTGGCAGGATTTGGCTACCATATATGTAAAACTTGCTTCATGGCCGGATGCAAAAATTTGTCTGAATAAAGCCAAGGCAATAGATGCTCATTGCCCCAGAGGTTGGCATACAACAGGCAAGTTTTTTGAAGCTCGATCATTACACAAGGAAGCGCTTGTTTCATTCTCACTCTCTCTATCAATTAATCCTGATTATGTTCCGAGTATGATATCAATGGCAGAAGTGTTAATGAAATGCGGTAACCGATCTCCCATTGCTCGCAGCTTGTTAATGAACGCTGTAAGATTAGATCCTACAAACCATGTAGCATGGTTCAACCTTGGAGTGCTTTCCAAAACGGAAGGTCTGTTGCTACAAGCTGCAGAATTTTTTCAAGCTGCACATGAACTCCAGCTATCTGCCCCTCTTCAGAGTTTTGTCTAA 2154 41.18 MLCACSGEQFKFEEPPPQSPESLATRDFSASCLSSRTGGDWDSKFDDSQVDEVESSLKEALSLNYEEARALLGRLEYQRGNYDAALQVFQGIDIRPLMPRMIKAINQRIREEKPSLKGDNVAPASVMSMHSVSLLLEAMLLKAKSMEELGRYIESAKECRIILDTVESALPNGMPDCVGEECKLQEMFHKALELLPTLWIKGGYIDEAINAYRRGLVKSWNLDPNKLAAIQKELAGMLLYGGVEASLPLKFHVFGPSTPKNNIEEAILLLLILMKKVVMQEISWDSEIINHLTYALSVTKQFELLAEHVEQILPGIFSRAERWYFLALCYNAAGQNEVALNLLMKVCGFSEVKHRPHFPSFLLLAKLCSEDTKYARDGIKLAHRMIDLANDQSKHFISEAHRFLGICYGNAARTSVSDSERILFRKESLNSLRVSALGGKHNPELMFNISLENAVQRNLDVAFYSAMSYTNTVADSSGRGWKLLTLILSAEQRLKDAETIVDFALDEVERMDQLDFLRLKAVIKLAQEQPKQAIETYRILLALIQARGDLQHQTRNFYQPKDTELEAAADSNLEREAWQDLATIYVKLASWPDAKICLNKAKAIDAHCPRGWHTTGKFFEARSLHKEALVSFSLSLSINPDYVPSMISMAEVLMKCGNRSPIARSLLMNAVRLDPTNHVAWFNLGVLSKTEGLLLQAAEFFQAAHELQLSAPLQSFV 717
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 3849293 3852175 - evm.model.ptg000015l.584 HCH4g0584 542828
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
HCH4g0584 717 Gene3D Tetratricopeptide repeat domain 38 245 IPR011990 GO:0005515(InterPro)
HCH4g0584 717 Gene3D Tetratricopeptide repeat domain 259 542 IPR011990 GO:0005515(InterPro)
HCH4g0584 717 SMART tpr_5 678 711 IPR019734 GO:0005515(InterPro)
HCH4g0584 717 SMART tpr_5 609 642 IPR019734 GO:0005515(InterPro)
HCH4g0584 717 SMART tpr_5 66 98 IPR019734 GO:0005515(InterPro)
HCH4g0584 717 SMART tpr_5 514 547 IPR019734 GO:0005515(InterPro)
HCH4g0584 717 SMART tpr_5 575 608 IPR019734 GO:0005515(InterPro)
HCH4g0584 717 SMART tpr_5 320 353 IPR019734 GO:0005515(InterPro)
HCH4g0584 717 SUPERFAMILY TPR-like 515 708 IPR011990 GO:0005515(InterPro)
HCH4g0584 717 Coils Coil 487 507 - -
HCH4g0584 717 Gene3D Tetratricopeptide repeat domain 561 712 IPR011990 GO:0005515(InterPro)
HCH4g0584 717 SUPERFAMILY TPR-like 310 553 IPR011990 GO:0005515(InterPro)
HCH4g0584 717 PANTHER PROTEIN NPG1 1 716 IPR043376 -
HCH4g0584 717 SUPERFAMILY TPR-like 48 341 IPR011990 GO:0005515(InterPro)
HCH4g0584 717 Coils Coil 58 78 - -
HCH4g0584 717 MobiDBLite consensus disorder prediction 6 27 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
HCH4g0584 HCH-Chr4:3849293 HCH5g0114 HCH-Chr5:704421 1.40E-147 dispersed
HCH4g0584 HCH-Chr4:3849293 HCH7g1352 HCH-Chr7:46367125 9.80E-149 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
HCH4g0584 K21843 - csv:101209448 1161.75