Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
HCH4g0590 | ATGGAAGCTTTGGGAGCTTTTCCTGATGGAGAATGGGACTCCCTTAGTGCCATTTTCTCGTCGCAAGAGCTCGATATCGCACCCCATTGCCTGAACCAGTGTTCATTCCCCATGGATCAGCATAATGCCATTGCTTCAATTCCTTGTCTCACAGACCTTGAAGACAACAGTGGAGGATCTGAGGTTCAAAAGAACAGCTGGTTCTATTCCTTGGATGCTTTTGATCCTAACATGCAGTACATAAAACAAGATATGAGCTCTAGTAGTTGTAGTACTGACTCTAGTGGTAGTGTTTTGTTTGCTAATCCAAGCAATGTTGAGAATTATTGTTGTTCAAGTGATATGTTTATGTCCATTGATGAGAATAATTTTGGATCTTTCTTTCCTGATATTTTGATGGGAGAAGAAGAAGGTATCTGTGTCCATGGAAATGGCGACAAATTCGATAATATACTTGGTAGCCAGTTGCAGCTTGCAGCGACTTCTGCGATGACTGGAAGAGGACTACCGATGAAAAGGAAGCACGACGTCCCGGAATCGCAAACTGAAGCTGATGATAACAATGCAGACTTCACTGATAATCATCAGAAGAAAACTCGGGTCTCTGGAGGAGTGCAAAGGAACAAGAAAACTCAACAGTCAAAGAAAATCCAGAAACAAGCTTCAAAGAAAAGTATTGTTGATCAGGAAGAAGGAAATGATGGACAAATCTCCATTGATGAAAGTTCAGAAGATGATAATGCATCACTTGAAACTCAGGACGGGACCGCCGCAACCTCGGATCAATCGAAGGAATCAGCTCCTGGCTTGAATGGGAAGACAAGAGCCAGTAGAGGGTCAGCAACCGATCCCCAAAGTCTCTATGCTAGAAAACGAAGGGAGAGAATCAATGAACGATTGAGAATCTTACAGAAACTTGTTCCTAATGGAACAAAGGTTGATATCAGTACAATGTTGGAAGAGGCAGTTAATTATGTGAAGTTTTTGCAGCTTCAAATCAAGTTACTGAGCTCAGATGAAATGTGGATGTATGCTCCTCTGGCTTACAATGGAATGGACATTGGTCTACACCAGAAGCTCTCTCCATTTATATCACACTGA | 1101 | 42.05 | MEALGAFPDGEWDSLSAIFSSQELDIAPHCLNQCSFPMDQHNAIASIPCLTDLEDNSGGSEVQKNSWFYSLDAFDPNMQYIKQDMSSSSCSTDSSGSVLFANPSNVENYCCSSDMFMSIDENNFGSFFPDILMGEEEGICVHGNGDKFDNILGSQLQLAATSAMTGRGLPMKRKHDVPESQTEADDNNADFTDNHQKKTRVSGGVQRNKKTQQSKKIQKQASKKSIVDQEEGNDGQISIDESSEDDNASLETQDGTAATSDQSKESAPGLNGKTRASRGSATDPQSLYARKRRERINERLRILQKLVPNGTKVDISTMLEEAVNYVKFLQLQIKLLSSDEMWMYAPLAYNGMDIGLHQKLSPFISH | 366 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
4 | 3896005 | 3897682 | - | evm.model.ptg000015l.590 | HCH4g0590 | 542834 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
HCH4g0590 | 366 | MobiDBLite | consensus disorder prediction | 169 | 197 | - | - | |
HCH4g0590 | 366 | PANTHER | TRANSCRIPTION FACTOR BHLH83-RELATED | 86 | 349 | IPR045843 | GO:0000978(PANTHER)|GO:0000981(PANTHER)|GO:0003700(InterPro)|GO:0005634(PANTHER)|GO:0006355(InterPro)|GO:0006357(PANTHER) | |
HCH4g0590 | 366 | CDD | bHLH_AtIND_like | 281 | 343 | - | - | |
HCH4g0590 | 366 | MobiDBLite | consensus disorder prediction | 249 | 284 | - | - | |
HCH4g0590 | 366 | SUPERFAMILY | HLH, helix-loop-helix DNA-binding domain | 280 | 345 | IPR036638 | GO:0046983(InterPro) | |
HCH4g0590 | 366 | SMART | finulus | 286 | 335 | IPR011598 | GO:0046983(InterPro) | |
HCH4g0590 | 366 | ProSiteProfiles | Myc-type, basic helix-loop-helix (bHLH) domain profile. | 280 | 329 | IPR011598 | GO:0046983(InterPro) | |
HCH4g0590 | 366 | MobiDBLite | consensus disorder prediction | 165 | 287 | - | - | |
HCH4g0590 | 366 | Gene3D | - | 282 | 347 | IPR036638 | GO:0046983(InterPro) | |
HCH4g0590 | 366 | MobiDBLite | consensus disorder prediction | 234 | 248 | - | - | |
HCH4g0590 | 366 | FunFam | Basic helix-loop-helix transcription factor | 281 | 338 | - | - | |
HCH4g0590 | 366 | Pfam | Helix-loop-helix DNA-binding domain | 290 | 330 | IPR011598 | GO:0046983(InterPro) |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
HCH4g0590 | HCH-Chr4:3896005 | HCH4g1831 | HCH-Chr4:47210590 | 1.90E-47 | dispersed | |
HCH12g0562 | HCH-Chr12:3308380 | HCH4g0590 | HCH-Chr4:3896005 | 2.90E-48 | wgd | |
HCH4g0590 | HCH-Chr4:3896005 | HCH7g0731 | HCH-Chr7:9295925 | 6.70E-45 | wgd |
Transcription factors information

Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
---|---|---|---|---|---|---|---|
33450 | PF00010 | HLH | 7.90E-09 | No_clan | HCH | TF |
Pathway information
