Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
HCH4g0590 ATGGAAGCTTTGGGAGCTTTTCCTGATGGAGAATGGGACTCCCTTAGTGCCATTTTCTCGTCGCAAGAGCTCGATATCGCACCCCATTGCCTGAACCAGTGTTCATTCCCCATGGATCAGCATAATGCCATTGCTTCAATTCCTTGTCTCACAGACCTTGAAGACAACAGTGGAGGATCTGAGGTTCAAAAGAACAGCTGGTTCTATTCCTTGGATGCTTTTGATCCTAACATGCAGTACATAAAACAAGATATGAGCTCTAGTAGTTGTAGTACTGACTCTAGTGGTAGTGTTTTGTTTGCTAATCCAAGCAATGTTGAGAATTATTGTTGTTCAAGTGATATGTTTATGTCCATTGATGAGAATAATTTTGGATCTTTCTTTCCTGATATTTTGATGGGAGAAGAAGAAGGTATCTGTGTCCATGGAAATGGCGACAAATTCGATAATATACTTGGTAGCCAGTTGCAGCTTGCAGCGACTTCTGCGATGACTGGAAGAGGACTACCGATGAAAAGGAAGCACGACGTCCCGGAATCGCAAACTGAAGCTGATGATAACAATGCAGACTTCACTGATAATCATCAGAAGAAAACTCGGGTCTCTGGAGGAGTGCAAAGGAACAAGAAAACTCAACAGTCAAAGAAAATCCAGAAACAAGCTTCAAAGAAAAGTATTGTTGATCAGGAAGAAGGAAATGATGGACAAATCTCCATTGATGAAAGTTCAGAAGATGATAATGCATCACTTGAAACTCAGGACGGGACCGCCGCAACCTCGGATCAATCGAAGGAATCAGCTCCTGGCTTGAATGGGAAGACAAGAGCCAGTAGAGGGTCAGCAACCGATCCCCAAAGTCTCTATGCTAGAAAACGAAGGGAGAGAATCAATGAACGATTGAGAATCTTACAGAAACTTGTTCCTAATGGAACAAAGGTTGATATCAGTACAATGTTGGAAGAGGCAGTTAATTATGTGAAGTTTTTGCAGCTTCAAATCAAGTTACTGAGCTCAGATGAAATGTGGATGTATGCTCCTCTGGCTTACAATGGAATGGACATTGGTCTACACCAGAAGCTCTCTCCATTTATATCACACTGA 1101 42.05 MEALGAFPDGEWDSLSAIFSSQELDIAPHCLNQCSFPMDQHNAIASIPCLTDLEDNSGGSEVQKNSWFYSLDAFDPNMQYIKQDMSSSSCSTDSSGSVLFANPSNVENYCCSSDMFMSIDENNFGSFFPDILMGEEEGICVHGNGDKFDNILGSQLQLAATSAMTGRGLPMKRKHDVPESQTEADDNNADFTDNHQKKTRVSGGVQRNKKTQQSKKIQKQASKKSIVDQEEGNDGQISIDESSEDDNASLETQDGTAATSDQSKESAPGLNGKTRASRGSATDPQSLYARKRRERINERLRILQKLVPNGTKVDISTMLEEAVNYVKFLQLQIKLLSSDEMWMYAPLAYNGMDIGLHQKLSPFISH 366
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 3896005 3897682 - evm.model.ptg000015l.590 HCH4g0590 542834
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
HCH4g0590 366 MobiDBLite consensus disorder prediction 169 197 - -
HCH4g0590 366 PANTHER TRANSCRIPTION FACTOR BHLH83-RELATED 86 349 IPR045843 GO:0000978(PANTHER)|GO:0000981(PANTHER)|GO:0003700(InterPro)|GO:0005634(PANTHER)|GO:0006355(InterPro)|GO:0006357(PANTHER)
HCH4g0590 366 CDD bHLH_AtIND_like 281 343 - -
HCH4g0590 366 MobiDBLite consensus disorder prediction 249 284 - -
HCH4g0590 366 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 280 345 IPR036638 GO:0046983(InterPro)
HCH4g0590 366 SMART finulus 286 335 IPR011598 GO:0046983(InterPro)
HCH4g0590 366 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 280 329 IPR011598 GO:0046983(InterPro)
HCH4g0590 366 MobiDBLite consensus disorder prediction 165 287 - -
HCH4g0590 366 Gene3D - 282 347 IPR036638 GO:0046983(InterPro)
HCH4g0590 366 MobiDBLite consensus disorder prediction 234 248 - -
HCH4g0590 366 FunFam Basic helix-loop-helix transcription factor 281 338 - -
HCH4g0590 366 Pfam Helix-loop-helix DNA-binding domain 290 330 IPR011598 GO:0046983(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
HCH4g0590 HCH-Chr4:3896005 HCH4g1831 HCH-Chr4:47210590 1.90E-47 dispersed
HCH12g0562 HCH-Chr12:3308380 HCH4g0590 HCH-Chr4:3896005 2.90E-48 wgd
HCH4g0590 HCH-Chr4:3896005 HCH7g0731 HCH-Chr7:9295925 6.70E-45 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
33450 PF00010 HLH 7.90E-09 No_clan HCH TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
HCH4g0590 - - - 0.0