Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
HCH4g0610 ATGGCTGAGATAGAGAATTGTGTTCGTGTAACTCGCGCTTCAAAGAAAAGAGCGGCGGCAGCTTCTTTCATCACTAACAATCAGCCTTTGAATAAGAAAAAGCGTGTTGTTTTAGGAGAGATTTCCAATTTCCAGAATGTGTCAAACTGCAAAGACAAGACCAACACCAAGAAGAAAACCACAAAAGCTCCTTCTAAAACGACCAAATCTGTTTTCCAAAACAGTGATCCTGATCCCAGGTTGTCCACTGATGAAAATCTAAATGACCCAGAAGAAATGACTGGGCCTTATTCTTCTGATATCTATTCCTATCTTCGCAAAATGGAGGCGGAACCTAAGAGAAGACCAATTCCTAATTACATTGAGAAAATTCAGACAGATGTAAGTGCTAATATGAGAGGGGTTTTGGTTGATTGGATGGTGGAGGTTGCTGAAGAATACAAGCTTTGTTCCGATACTATGTACTTATCGATTGCCTATATCGATAAGTACTTGTCTATGAATATTCTCAATCGGCATAGACTTCAGTTATTGGGTGTTTCTTCCATGCTCATTGCCTCGAAGTATGAAGAGATCACCCCTCCAAATGTTGAAGATTTCTGTTACATTACAGATAATACTTACAAAAAAGATGAGGTTGTGAAAATGGAGGCTGATATACTGAAGTCTTTGAACTTTGAAATGGGAAATCCCACTACCAAGACATTCTTAAGACGGTTCACCAATGTTTCTCAAGAAGATTTCAAAACACCGATTTTGCAGTTGGAATTTCTTGGCTATTATCTTGCAGAGCTTAGTTTGTTGGATTATAATTGTGTGAAGTTTTTACCTTCTCTGGTAGCTGCATCGGTTGTATTTCTGGCAAGATTTATCGTCTCTCCATTGTTGCATCCATGGAGTCTAGGCTTGCAAGAATACTCAGGCTACAAGCCATCCGATTTGAAGCAATGTGTGATTCTGTTACATGATTTATATATGGGAAGAAGAGGAGGATCTCTGATAGCTGTTAGAGAAAAATACAAGCAACATAGGTTTAAGTGTGTGGCAATTCTGCCTTCACCTCCAGAAATACCAGTTTCCCATTTTGAACTTGTTTAG 1098 38.89 MAEIENCVRVTRASKKRAAAASFITNNQPLNKKKRVVLGEISNFQNVSNCKDKTNTKKKTTKAPSKTTKSVFQNSDPDPRLSTDENLNDPEEMTGPYSSDIYSYLRKMEAEPKRRPIPNYIEKIQTDVSANMRGVLVDWMVEVAEEYKLCSDTMYLSIAYIDKYLSMNILNRHRLQLLGVSSMLIASKYEEITPPNVEDFCYITDNTYKKDEVVKMEADILKSLNFEMGNPTTKTFLRRFTNVSQEDFKTPILQLEFLGYYLAELSLLDYNCVKFLPSLVAASVVFLARFIVSPLLHPWSLGLQEYSGYKPSDLKQCVILLHDLYMGRRGGSLIAVREKYKQHRFKCVAILPSPPEIPVSHFELV 365
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 4008048 4009785 + evm.model.ptg000015l.610 HCH4g0610 542854
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
HCH4g0610 365 FunFam Cyclin A1 218 350 - -
HCH4g0610 365 SMART cyclin_7 138 222 IPR013763 -
HCH4g0610 365 SMART cyclin_7 235 323 IPR013763 -
HCH4g0610 365 ProSitePatterns Cyclins signature. 133 164 IPR048258 -
HCH4g0610 365 MobiDBLite consensus disorder prediction 49 96 - -
HCH4g0610 365 PIRSF Cyclin_A_B_D_E 2 363 IPR046965 GO:0016538(InterPro)|GO:0044772(InterPro)
HCH4g0610 365 CDD CYCLIN_AtCycA-like_rpt2 231 345 - -
HCH4g0610 365 PANTHER CYCLINS 74 342 IPR039361 GO:0000079(PANTHER)|GO:0000307(PANTHER)|GO:0005634(PANTHER)|GO:0005737(PANTHER)|GO:0016538(PANTHER)|GO:0044772(PANTHER)
HCH4g0610 365 FunFam Mitotic cyclin 6 116 216 - -
HCH4g0610 365 Pfam Cyclin, C-terminal domain 231 353 IPR004367 -
HCH4g0610 365 MobiDBLite consensus disorder prediction 65 81 - -
HCH4g0610 365 Pfam Cyclin, N-terminal domain 100 228 IPR006671 -
HCH4g0610 365 SUPERFAMILY Cyclin-like 231 356 IPR036915 -
HCH4g0610 365 SMART Cyclin_C_2 231 354 IPR004367 -
HCH4g0610 365 SUPERFAMILY Cyclin-like 92 228 IPR036915 -
HCH4g0610 365 Gene3D - 100 349 - -
HCH4g0610 365 Gene3D - 116 229 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
HCH4g0400 HCH-Chr4:2601293 HCH4g0610 HCH-Chr4:4008048 3.60E-72 dispersed
HCH4g0610 HCH-Chr4:4008048 HCH4g1352 HCH-Chr4:9549372 6.70E-77 dispersed
HCH12g0581 HCH-Chr12:3405954 HCH4g0610 HCH-Chr4:4008048 1.50E-124 wgd
HCH4g0610 HCH-Chr4:4008048 HCH7g0708 HCH-Chr7:8615998 4.20E-87 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
HCH4g0610 K06627 - csv:101206145 529.25