Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
HCH4g0623 ATGCTTTTAACGAAATGCCCATTTCTTCACTGGTTTTTTCTCTTCCTCTCAGCTTCATTTCTTCTCCTTTCTTTTTCCTCAATCCCACCCTCGTCCGATGGCGCAGCCCTTCTGTCTTTCAAATCCAAAGCCGATTTAAACAACACCCTTTACTTCAACCAATCTCTCCATTTCTGTCAATGGCACGGAGTTTCCTGCTCCAAAACCAAGGTAACGCGTCTCCTCCTTCAAAACTTGAACCTTGGTGGCGTTTTCTCTCCCGATACATTAACACGTCTTGATCAGCTACGAGTTCTGAGTTTGCAAAACAACTCTCTTTCTGGTCCTATCCCTGATCTCACACCCCTCGTCAACCTCAAAACCCTCTTCTTAGACCATAACAATTTTTCTTCTTCTTTTCCACCCTCCATTCTATCTCTTCATAGGATCCGTACCATTGATTTATCTTATAATGCTTTTACCGGTAACTTGCCAACCTGGTTGACGAGATTGGACCGGCTTTATTCTCTTCGCCTTGAACACAACCGCTTTAACGGAACCGTTCCGGCTTTTAACCAAACGTCGTTACGTAGTTTAGATTTCTCCGGTAATAATCTCACCGGGGCTGTTCCGGTGACGGCGGTTCTGATACGATTTGGAGCTGCTTCGTTTTCATTGAATCCGGGTCTTTGTGGAGAGATTTTACACAGGGAATGTCGCCCTGTTCCGCCGTTTTTTGACGTCGGAGTGGCGCCACCGGCGGGGGTTTTGGGTCAGAGTGCTGCGGTTCACGGCGGGGGATGGACAGAACAAGGACAAGGACAACCTCGTACCAAGCACAACAAGAGAAATGTTGTAATCATCGGATTTTCGTCGGCGATAGTCGTCTTGTTGAGCTTCGTTCTTTGCTTTTCGATGGCGGTGAGGAAACGTGGGAATGGTAAAGAATCGATGGATGCGATGGTATCCGATGCGGCGGCGACGGCGGCGGCGATGAAGCAAATAGAGGAAGAAATGAATGAGAAAGTAAAGAGAGTGCAGAGAATCCACGTGGCGAAAAGTGGGAATTTAGTTTTCTGTGCGGGTGAGACACAGGTGTATACGTTGGAGCAGCTAATGAGAGGATCTGCTGAGTTGCTTGGGAGGGGTACAATGGGAAGTGCGTATAAGGCCGTGCTTGATAACCGTTTGATTGTGAGTGTGAAGAGGCTTGATGCCGTTAGATTAGAGGGTGTAGATAAGGAAATGTTTGAGAGACATATGGAATCTGTTGGTGGATTGAGACATCCTAATTTGGTGCCTCTGAGAGCTTACTTTCAAGCTAAAGAAGAGAGACTTCTTGTTTATGATTATCAGCCTAATGGCAGCCTTTTCTCTCTCATTCATGGTTCTAGATCGACGCGGGCGAAACCGCTACATTGGACTTCTTGCCTTAAAATTGCAGAGGATGTGGCACAAGGCCTTTCCTACATTCACCAAGCATGGAGGCTCGTCCATGGCAATCTCAAGTCCTCCAACGTCCTTCTCGGTGCAGACTTTGAAGCCTGCATTTCCGACTATTGCCTCTCCGTCCTCGCTGTTGTACCGCTTGATAATGACGACCCTAATTTGAAAGCGTACAGAGCTCCGGAAACTCATAATTCCCAAAACCTGGCAACTGCCAAATCCGACGTTTATTCATTCGGAGTTTTGTTGTTGGAGCTTCTTACCGGAAGGCCTCCATTGCAGCACCCGTGTTTTTCGCCAAGTGATATGATGAAATGGGTTAGATCTGTGAGGGGAGATGAGGGCGTGGAAGAGAGTAGAATGAGAATGCTTGTAGAGGTGTCTATGGTTTGTAGCGTAAGCTCGCCGGAGCAGAGGCCGACAATGTGGCAAGTGTTGAAGATGTTACAAGAGATTAAAGATGTGGTGGTGCAAGATGATGGGGGAAATGAAATGGATTCCCTCCATGGGATGTCTTAG 1944 47.17 MLLTKCPFLHWFFLFLSASFLLLSFSSIPPSSDGAALLSFKSKADLNNTLYFNQSLHFCQWHGVSCSKTKVTRLLLQNLNLGGVFSPDTLTRLDQLRVLSLQNNSLSGPIPDLTPLVNLKTLFLDHNNFSSSFPPSILSLHRIRTIDLSYNAFTGNLPTWLTRLDRLYSLRLEHNRFNGTVPAFNQTSLRSLDFSGNNLTGAVPVTAVLIRFGAASFSLNPGLCGEILHRECRPVPPFFDVGVAPPAGVLGQSAAVHGGGWTEQGQGQPRTKHNKRNVVIIGFSSAIVVLLSFVLCFSMAVRKRGNGKESMDAMVSDAAATAAAMKQIEEEMNEKVKRVQRIHVAKSGNLVFCAGETQVYTLEQLMRGSAELLGRGTMGSAYKAVLDNRLIVSVKRLDAVRLEGVDKEMFERHMESVGGLRHPNLVPLRAYFQAKEERLLVYDYQPNGSLFSLIHGSRSTRAKPLHWTSCLKIAEDVAQGLSYIHQAWRLVHGNLKSSNVLLGADFEACISDYCLSVLAVVPLDNDDPNLKAYRAPETHNSQNLATAKSDVYSFGVLLLELLTGRPPLQHPCFSPSDMMKWVRSVRGDEGVEESRMRMLVEVSMVCSVSSPEQRPTMWQVLKMLQEIKDVVVQDDGGNEMDSLHGMS 647
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 4077127 4079383 + evm.model.ptg000015l.623 HCH4g0623 542867
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
HCH4g0623 647 ProSiteProfiles Protein kinase domain profile. 367 627 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
HCH4g0623 647 PANTHER LEUCINE-RICH REPEAT RECEPTOR-LIKE PROTEIN KINASE PXC1 32 628 IPR046959 -
HCH4g0623 647 Pfam Protein tyrosine and serine/threonine kinase 371 623 IPR001245 GO:0004672(InterPro)|GO:0006468(InterPro)
HCH4g0623 647 Pfam Leucine Rich Repeat 188 204 IPR001611 GO:0005515(InterPro)
HCH4g0623 647 Pfam Leucine Rich Repeat 95 112 IPR001611 GO:0005515(InterPro)
HCH4g0623 647 SUPERFAMILY L domain-like 53 204 - -
HCH4g0623 647 SUPERFAMILY Protein kinase-like (PK-like) 371 629 IPR011009 -
HCH4g0623 647 FunFam Nuclear pore complex protein NUP107 31 183 - -
HCH4g0623 647 Gene3D Phosphorylase Kinase; domain 1 324 444 - -
HCH4g0623 647 ProSiteProfiles Leucine-rich repeat profile. 95 117 IPR001611 GO:0005515(InterPro)
HCH4g0623 647 Gene3D Ribonuclease Inhibitor 31 185 IPR032675 -
HCH4g0623 647 Gene3D Transferase(Phosphotransferase) domain 1 446 641 - -
HCH4g0623 647 Gene3D Ribonuclease Inhibitor 186 235 IPR032675 -
HCH4g0623 647 Pfam Leucine rich repeat 118 177 IPR001611 GO:0005515(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
HCH4g0623 HCH-Chr4:4077127 HCH8g0788 HCH-Chr8:44481990 3.80E-67 dispersed
HCH1g0105 HCH-Chr1:8230422 HCH4g0623 HCH-Chr4:4077127 4.00E-112 transposed
HCH14g0302 HCH-Chr14:31658011 HCH4g0623 HCH-Chr4:4077127 1.50E-153 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
81453 PF00069 Pkinase 1.40E-31 CL0016 HCH PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
HCH4g0623 - - - 0.0