Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
HCH4g0626 ATGGGATCAAGCATGAAGGTGCATCAGTTTGCACGTGGATTTTGGGAGCATGATCAACCTTCACTCACGCTTGGTGCTTGCAAGCGCTTACGTCCTCTCGCTCCCAAACTTCAATCCACAGCTACCAGCAGCTCTGATACCAGCAGTCTCACCACCTTCGACCTTAAGAGCTTCATTAGACCCGATAGCGGTCCTATAAAACTAACTTCCTCAGACGAGAAGAAAGACTCGTCTCAGGTGGAGACGCATCCGGGAGGTACGCGATGGAATCCGACGCAAGAACAGATAGGCATATTGGAGATGCTATATAGGAGAGGAATGAGGACTCCTAATGCACAGCAAATAGAACAGATAACGGCACAGCTGGAGAAATACGGGAAGATAGAGGGGAAGAATGTGTTTTATTGGTTTCAAAACCACAAAGCACGAGAGAGACAGAAGCAGAAGCGTAATAGTCTTGGTCTTGGACATAGTCCTAGAACACCTCCACCACCCATTATTACCTCCATAGCTCTGGACACTATGGGAGAAGAAGATAGTCCATACAAGAGGAAATGCAGGAGCTGGGCTTTTGAATGTTTGGTAGAAGATAAGGGTATATTATGTAAAAAACAGGAACAAGGAGATAGAACTTTGGAGTTATTCCCCTTGCACCCAGAAGGCAGATGA 669 46.34 MGSSMKVHQFARGFWEHDQPSLTLGACKRLRPLAPKLQSTATSSSDTSSLTTFDLKSFIRPDSGPIKLTSSDEKKDSSQVETHPGGTRWNPTQEQIGILEMLYRRGMRTPNAQQIEQITAQLEKYGKIEGKNVFYWFQNHKARERQKQKRNSLGLGHSPRTPPPPIITSIALDTMGEEDSPYKRKCRSWAFECLVEDKGILCKKQEQGDRTLELFPLHPEGR 222
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 4097617 4098508 + evm.model.ptg000015l.626 HCH4g0626 542870
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
HCH4g0626 222 MobiDBLite consensus disorder prediction 145 168 - -
HCH4g0626 222 Pfam Homeodomain 87 146 IPR001356 GO:0003677(InterPro)
HCH4g0626 222 SUPERFAMILY Homeodomain-like 82 152 IPR009057 -
HCH4g0626 222 SMART HOX_1 84 151 IPR001356 GO:0003677(InterPro)
HCH4g0626 222 PANTHER WUSCHEL-RELATED HOMEOBOX 4 3 222 IPR044186 GO:0003700(InterPro)|GO:0005634(PANTHER)|GO:0009888(PANTHER)|GO:0010067(InterPro)|GO:0010087(InterPro)|GO:0051301(InterPro)
HCH4g0626 222 FunFam WUSCHEL-related homeobox 4 86 153 - -
HCH4g0626 222 Gene3D - 86 153 - -
HCH4g0626 222 ProSiteProfiles 'Homeobox' domain profile. 82 147 IPR001356 GO:0003677(InterPro)
HCH4g0626 222 MobiDBLite consensus disorder prediction 67 81 - -
HCH4g0626 222 MobiDBLite consensus disorder prediction 64 91 - -
HCH4g0626 222 CDD homeodomain 87 148 IPR001356 GO:0003677(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
HCH3g0207 HCH-Chr3:1315760 HCH4g0626 HCH-Chr4:4097617 2.50E-23 dispersed
HCH3g1345 HCH-Chr3:51126106 HCH4g0626 HCH-Chr4:4097617 5.20E-26 dispersed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
33454 PF00046 Homeodomain 4.20E-19 CL0123 HCH TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
HCH4g0626 - - - 0.0