Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
HCH4g0626 ATGGGATCAAGCATGAAGGTGCATCAGTTTGCACGTGGATTTTGGGAGCATGATCAACCTTCACTCACGCTTGGTGCTTGCAAGCGCTTACGTCCTCTCGCTCCCAAACTTCAATCCACAGCTACCAGCAGCTCTGATACCAGCAGTCTCACCACCTTCGACCTTAAGAGCTTCATTAGACCCGATAGCGGTCCTATAAAACTAACTTCCTCAGACGAGAAGAAAGACTCGTCTCAGGTGGAGACGCATCCGGGAGGTACGCGATGGAATCCGACGCAAGAACAGATAGGCATATTGGAGATGCTATATAGGAGAGGAATGAGGACTCCTAATGCACAGCAAATAGAACAGATAACGGCACAGCTGGAGAAATACGGGAAGATAGAGGGGAAGAATGTGTTTTATTGGTTTCAAAACCACAAAGCACGAGAGAGACAGAAGCAGAAGCGTAATAGTCTTGGTCTTGGACATAGTCCTAGAACACCTCCACCACCCATTATTACCTCCATAGCTCTGGACACTATGGGAGAAGAAGATAGTCCATACAAGAGGAAATGCAGGAGCTGGGCTTTTGAATGTTTGGTAGAAGATAAGGGTATATTATGTAAAAAACAGGAACAAGGAGATAGAACTTTGGAGTTATTCCCCTTGCACCCAGAAGGCAGATGA 669 46.34 MGSSMKVHQFARGFWEHDQPSLTLGACKRLRPLAPKLQSTATSSSDTSSLTTFDLKSFIRPDSGPIKLTSSDEKKDSSQVETHPGGTRWNPTQEQIGILEMLYRRGMRTPNAQQIEQITAQLEKYGKIEGKNVFYWFQNHKARERQKQKRNSLGLGHSPRTPPPPIITSIALDTMGEEDSPYKRKCRSWAFECLVEDKGILCKKQEQGDRTLELFPLHPEGR 222
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 4097617 4098508 + evm.model.ptg000015l.626 HCH4g0626 542870

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
HCH4g0626 222 MobiDBLite consensus disorder prediction 145 168 - -
HCH4g0626 222 Pfam Homeodomain 87 146 IPR001356 GO:0003677(InterPro)
HCH4g0626 222 SUPERFAMILY Homeodomain-like 82 152 IPR009057 -
HCH4g0626 222 SMART HOX_1 84 151 IPR001356 GO:0003677(InterPro)
HCH4g0626 222 PANTHER WUSCHEL-RELATED HOMEOBOX 4 3 222 IPR044186 GO:0003700(InterPro)|GO:0005634(PANTHER)|GO:0009888(PANTHER)|GO:0010067(InterPro)|GO:0010087(InterPro)|GO:0051301(InterPro)
HCH4g0626 222 FunFam WUSCHEL-related homeobox 4 86 153 - -
HCH4g0626 222 Gene3D - 86 153 - -
HCH4g0626 222 ProSiteProfiles 'Homeobox' domain profile. 82 147 IPR001356 GO:0003677(InterPro)
HCH4g0626 222 MobiDBLite consensus disorder prediction 67 81 - -
HCH4g0626 222 MobiDBLite consensus disorder prediction 64 91 - -
HCH4g0626 222 CDD homeodomain 87 148 IPR001356 GO:0003677(InterPro)
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
HCH4g0626 - - - - 0.0
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
HCH3g0207 HCH-Chr3:1315760 HCH4g0626 HCH-Chr4:4097617 2.50E-23 dispersed
HCH3g1345 HCH-Chr3:51126106 HCH4g0626 HCH-Chr4:4097617 5.20E-26 dispersed
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
HCH11g0661 . 19 256 Wox Gene Family AT3G03660 55.5 8.7e-51 197.6
HCH12g0054 . 28 173 Wox Gene Family AT1G20700 50.7 1.7e-37 152.9
HCH4g0626 . 5 153 Wox Gene Family AT1G46480 68.4 2.5e-51 198.7
HCH13g0539 . 31 191 Wox Gene Family AT3G11260 51.7 6.2e-39 157.5
HCH4g0626 . 5 153 Wox Gene Family AT1G46480 68.4 2.5e-51 198.7
HCH13g0539 . 31 191 Wox Gene Family AT3G11260 51.7 6.2e-39 157.5
HCH11g0661 . 19 256 Wox Gene Family AT3G03660 55.5 8.7e-51 197.6
HCH12g0054 . 28 173 Wox Gene Family AT1G20700 50.7 1.7e-37 152.9
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0005110 2 1 1 2 2 1 3 1 1 1 1 1 2 1 1 2 1 2 2 1 1 1 1 1 1 1 1 2 2 1 41
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
33454 PF00046 Homeodomain 4.20E-19 CL0123 HCH TF