Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
HCH4g0629 ATGTCTAATTATGCATTCTTGAATGACCAGCTCTCAAAAAAGACATCAATTTTTGGTTTACGTTTATGGGTTGTGCTTGGAATTTGCGTGGGTGCTGCCATTGTTATAGTTCTTTTCCTCATTTCATTATGGTTTACTTCTAAACGCAACAATTCTTCATCAAAATCTAAACTTTCACAAAACCCCATTATCCCTATTGTCTCTAAGGAAATCCAAGAAATCAGAATTGACCATTCTAGAAACCCCATTTCTCATTCTGACCCTAAACCCCAATTAGCTTCTAACCCGGAGCCATTGCCTGAACCTGAGCCTTTAGCTACTCTGCTTCAGATAGAAGACGAGAGCCCAGTTAGTGGACGTCAGAGAATTCATATTGAAATTGGGAAGGATCACCGGATTTCGTATCCGGAGAGAGGCGGTGGTGGTAGTTCATCGCAAGTTAGCGGTGAAGCTCGGTCCGGTGATCAGGGACCGGTGGCGGTGCCGGAGGTTTCGCATTTGGGGTGGGGGCATTGGTATACTCTTAGAGAGCTTGAGTATTCTACTAATGGTTTTGCGGATGAAAATGTGATTGGTGAAGGTGGGTATGGAATTGTGTACCGTGGTGTTTTTGAGGATGGTACTGTGGTTGCTGTAAAGAATTTGCTTAATAATAGGGGACAGGCTGAGAAGGAGTTTAAGGTTGAAGTTGAAGCAATTGGACGTGTTCGGCATAAGAATCTGGTTCGGTTGCTTGGTTATTGTGTTGAAGGAGCTCATAGGATGCTTGTTTACGAGTACGTTGATAATGGAAACTTGGAACAATGGCTTCATGGAGAAGTTGGGCCTTCTAGTCCTCTCACATGGGATATTCGAATGAATATAATAGTTGGAACGGCAAAAGGGGTGACATATCTGCACGAGGGACTTGAACCTAAAGTCGTTCACCGTGATATCAAGTCAAGTAACATCTTACTTGACAAGCAGTGGAATCCAAAGGTCTCTGATTTTGGCCTAGCGAAGCTTCTTGGCTCAGAGAGAAGTTATGTAACAACCCGTGTGATGGGAACTTTTGGATATGTAGCTCCAGAATATGCTAGTACTGGCATGTTGAATGAAAAAAGTGATGTATATAGTTTCGGTATCCTCATTATGGAGCTAATTTCAGGGAGAAATCCAGTGGATTATAGCCGCCCTCCGGGAGAGGTGAACTTGGTTGAGTGGCTTAAAACAATGGTCACTAATCGAAACACAGAGGGAGTTCTGGATCCTAAGTTGCCCGAGAATCCTTCTTCAAGGGTCCTCAAGCGTGTTCTGTTAGTAGCTTTACGGTGTGTGGATCCTAATGTTCAGAAGAGGCCAAAAATGGGGCATGTAATACATATGCTCGAAGCTGATGAATTTCCCTTTCGAGACGATCGTCGAGGGGGTCGGGAATATGGACGATCTCTACTAAAGGAAAAGCTAATGGACAGGCTTGTGAGTGAATCTGGAGATAGTAGTGGATATGAAAGTGGAGCAACCCAAAATAGCAGACAATTATGGAGAAAGCAAGAGTCTGACGAATTACAGCCTACGCATATTTTAAGGTGA 1572 43.51 MSNYAFLNDQLSKKTSIFGLRLWVVLGICVGAAIVIVLFLISLWFTSKRNNSSSKSKLSQNPIIPIVSKEIQEIRIDHSRNPISHSDPKPQLASNPEPLPEPEPLATLLQIEDESPVSGRQRIHIEIGKDHRISYPERGGGGSSSQVSGEARSGDQGPVAVPEVSHLGWGHWYTLRELEYSTNGFADENVIGEGGYGIVYRGVFEDGTVVAVKNLLNNRGQAEKEFKVEVEAIGRVRHKNLVRLLGYCVEGAHRMLVYEYVDNGNLEQWLHGEVGPSSPLTWDIRMNIIVGTAKGVTYLHEGLEPKVVHRDIKSSNILLDKQWNPKVSDFGLAKLLGSERSYVTTRVMGTFGYVAPEYASTGMLNEKSDVYSFGILIMELISGRNPVDYSRPPGEVNLVEWLKTMVTNRNTEGVLDPKLPENPSSRVLKRVLLVALRCVDPNVQKRPKMGHVIHMLEADEFPFRDDRRGGREYGRSLLKEKLMDRLVSESGDSSGYESGATQNSRQLWRKQESDELQPTHILR 523
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 4123666 4126205 + evm.model.ptg000015l.629 HCH4g0629 542873
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
HCH4g0629 523 MobiDBLite consensus disorder prediction 508 523 - -
HCH4g0629 523 ProSitePatterns Protein kinases ATP-binding region signature. 191 213 IPR017441 GO:0005524(InterPro)
HCH4g0629 523 MobiDBLite consensus disorder prediction 79 99 - -
HCH4g0629 523 Gene3D Transferase(Phosphotransferase) domain 1 261 467 - -
HCH4g0629 523 FunFam Putative receptor-like serine/threonine-protein kinase 261 471 - -
HCH4g0629 523 ProSitePatterns Serine/Threonine protein kinases active-site signature. 307 319 IPR008271 GO:0004672(InterPro)|GO:0006468(InterPro)
HCH4g0629 523 MobiDBLite consensus disorder prediction 131 158 - -
HCH4g0629 523 MobiDBLite consensus disorder prediction 488 523 - -
HCH4g0629 523 Pfam Protein kinase domain 187 454 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
HCH4g0629 523 SMART serkin_6 185 463 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
HCH4g0629 523 ProSiteProfiles Protein kinase domain profile. 185 443 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
HCH4g0629 523 PANTHER OS01G0323000 PROTEIN 6 494 IPR052232 -
HCH4g0629 523 CDD STKc_IRAK 191 457 - -
HCH4g0629 523 SUPERFAMILY Protein kinase-like (PK-like) 166 457 IPR011009 -
HCH4g0629 523 Gene3D Phosphorylase Kinase; domain 1 163 260 - -
HCH4g0629 523 FunFam Probable serine/threonine-protein kinase At1g01540 165 260 - -
HCH4g0629 523 MobiDBLite consensus disorder prediction 491 507 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
HCH11g1253 HCH-Chr11:44682548 HCH4g0629 HCH-Chr4:4123666 4.80E-74 dispersed
HCH4g0629 HCH-Chr4:4123666 HCH7g1646 HCH-Chr7:48561545 6.90E-176 dispersed
HCH6g1212 HCH-Chr6:46558724 HCH4g0629 HCH-Chr4:4123666 5.80E-31 dispersed
HCH7g0557 HCH-Chr7:4445558 HCH4g0629 HCH-Chr4:4123666 5.10E-146 transposed
HCH14g0290 HCH-Chr14:31355245 HCH4g0629 HCH-Chr4:4123666 1.30E-202 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
81454 PF00069 Pkinase 3.70E-47 CL0016 HCH PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
HCH4g0629 - - - 0.0