Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
HCH4g0633 ATGTCTGTAATGTTAGACAATTGTGAAGGAATCTTACTTTCTCTGGACTCTCACAAATCAGTTCCAGCTCCTTTCCTCTCTAAAACTTATCAGCTTGTTGATGATCCTTCCACTGATAACATTGTTTCATGGGGTGAAGATGATACAACTTTTGTTGTTTGGCGCCCTCCTGAGTTTGCTCGTGATCTCCTTCCTAATTACTTCAAGCATAATAACTTCTCTAGCTTCGTTCGCCAGCTTAACACTTATGGTTTTAGGAAGATTGTTCCTGACAGATGGGAGTTTGCAAATGAGTTCTTCAGAAAGGGAGAGAAGCATTTACTTTGTGAGATTCATAGAAGAAAAACTGCTCAGCCCCAAGTGGGTTATAACCATCATCACCACCACCTCCTCCATCAACATTCTCTCGGTATCGGTGGGCCGACGCCGAGTTTCTTTCCATTCCCGAGCCGAATGAGTATCTCGCCGTCGGACTCGGACGAGCAAGGGAATTGGTGTGACTCGCCACCAAGGGGAGTCGGCGGCCCCGTCGGAGGATTATCAATTTTTGGTGGTAATGCTAATAATACTAATAATGGTTACAATATGATCAATTCAGTTACAGCTCTATCTGAAGATAATGAGAGGTTGAGGAGGAACAACTCTATGCTGATTTCTGAGCTTGCCCACATGAGGAAGCTTTATAATGATATTATCTATTTTGTCCAAAACCATGTCAAGCCTGTTTCACCAAGCAATTCTTTCCCATCTTTGCTTCTTTGTCATCAACCACCTTCTCAAAAGCCTCTCAACCAGTTTCTTGGAATCTATCCTCCTAGCCCTTATAAACAGCCACCAACTCCTTCCTCAGCTCAGTTTGTCAGCTCTCCGACAGCAACATCGAAGAGCGCCGTAACGGAGCTCGACATGTCGATCTCCGAGCCGAACAACGGCTGCAAAACCAAGCTTTTTGGAGTGCCACTTCTATCAAACAAGAAAAGATTGCACCCTGATAACTACGGATCTATTTCTTCCAACTCACAGACCAACAAAAGCCCTCGTTTGGTCTTGGAAAAAGGGGATTTGGGCCTTAATCTTATGCCTCCTTCTACATGCTAG 1098 44.26 MSVMLDNCEGILLSLDSHKSVPAPFLSKTYQLVDDPSTDNIVSWGEDDTTFVVWRPPEFARDLLPNYFKHNNFSSFVRQLNTYGFRKIVPDRWEFANEFFRKGEKHLLCEIHRRKTAQPQVGYNHHHHHLLHQHSLGIGGPTPSFFPFPSRMSISPSDSDEQGNWCDSPPRGVGGPVGGLSIFGGNANNTNNGYNMINSVTALSEDNERLRRNNSMLISELAHMRKLYNDIIYFVQNHVKPVSPSNSFPSLLLCHQPPSQKPLNQFLGIYPPSPYKQPPTPSSAQFVSSPTATSKSAVTELDMSISEPNNGCKTKLFGVPLLSNKKRLHPDNYGSISSNSQTNKSPRLVLEKGDLGLNLMPPSTC 365
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 4146625 4147836 + evm.model.ptg000015l.633 HCH4g0633 542877

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
HCH4g0633 365 SUPERFAMILY Winged helix DNA-binding domain 22 114 IPR036390 -
HCH4g0633 365 Coils Coil 200 220 - -
HCH4g0633 365 FunFam Heat stress transcription factor B-4 17 115 - -
HCH4g0633 365 Pfam HSF-type DNA-binding 25 114 IPR000232 GO:0003700(InterPro)|GO:0006355(InterPro)|GO:0043565(InterPro)
HCH4g0633 365 SMART hsfneu3 21 114 IPR000232 GO:0003700(InterPro)|GO:0006355(InterPro)|GO:0043565(InterPro)
HCH4g0633 365 PANTHER HEAT SHOCK TRANSCRIPTION FACTOR 21 309 IPR027725 GO:0000978(PANTHER)|GO:0003700(PANTHER)|GO:0005634(PANTHER)|GO:0006357(PANTHER)
HCH4g0633 365 ProSitePatterns HSF-type DNA-binding domain signature. 64 88 IPR000232 GO:0003700(InterPro)|GO:0006355(InterPro)|GO:0043565(InterPro)
HCH4g0633 365 Gene3D - 17 116 IPR036388 -
HCH4g0633 365 PRINTS Heat shock factor (HSF) domain signature 63 75 IPR000232 GO:0003700(InterPro)|GO:0006355(InterPro)|GO:0043565(InterPro)
HCH4g0633 365 PRINTS Heat shock factor (HSF) domain signature 25 48 IPR000232 GO:0003700(InterPro)|GO:0006355(InterPro)|GO:0043565(InterPro)
HCH4g0633 365 PRINTS Heat shock factor (HSF) domain signature 76 88 IPR000232 GO:0003700(InterPro)|GO:0006355(InterPro)|GO:0043565(InterPro)
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
HCH4g0633 K09419 - - csv:101218781 520.005
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
HCH4g0633 HCH-Chr4:4146625 HCH8g0379 HCH-Chr8:34357261 2.20E-59 dispersed
HCH12g0626 HCH-Chr12:3757973 HCH4g0633 HCH-Chr4:4146625 9.50E-129 wgd
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
HCH7g1253 . 34 264 HSF AT4G17750 52.4 1.5e-60 230.7
HCH7g0889 . 40 240 HSF AT4G17750 54.8 9.4e-58 221.5
HCH4g0530 . 40 242 HSF AT4G17750 54.1 1.1e-55 214.5
HCH5g0050 . 45 230 HSF AT4G17750 54.7 5.9e-52 202.2
HCH4g0633 . 20 118 HSF AT4G17750 71.7 5.7e-39 159.1
HCH12g0626 . 20 118 HSF AT4G17750 69.7 2.2e-38 157.1
HCH5g0481 . 6 116 HSF AT4G17750 58.7 2.7e-36 150.2
HCH7g1253 . 35 239 HSF AT5G16820 55.6 2.0e-57 220.3
HCH7g0889 . 41 244 HSF AT5G16820 56.8 1.9e-55 213.8
HCH4g0530 . 41 226 HSF AT5G16820 53.9 1.8e-53 207.2
HCH5g0050 . 49 230 HSF AT5G16820 54.7 6.3e-51 198.7
HCH10g0544 . 91 273 HSF AT5G16820 50.3 1.8e-45 180.6
HCH2g0892 . 13 198 HSF AT5G16820 51.3 1.7e-43 174.1
HCH6g1129 . 4 513 HSF AT1G32330 53.0 1.9e-119 426.4
HCH7g1253 . 23 224 HSF AT1G32330 54.9 1.4e-58 224.2
HCH7g0889 . 29 240 HSF AT1G32330 52.2 3.1e-58 223.0
HCH4g0530 . 29 224 HSF AT1G32330 51.0 1.2e-52 204.5
HCH5g0050 . 37 230 HSF AT1G32330 51.5 2.6e-52 203.4
HCH3g0733 . 12 162 HSF AT1G32330 57.7 3.6e-46 183.0
HCH4g0633 . 20 117 HSF AT1G32330 71.4 2.1e-38 157.1
HCH12g0626 . 22 117 HSF AT1G32330 71.9 1.1e-37 154.8
HCH7g1253 . 35 246 HSF AT3G02990 54.3 1.4e-58 224.2
HCH7g0889 . 41 243 HSF AT3G02990 54.8 3.4e-57 219.5
HCH4g0530 . 41 222 HSF AT3G02990 52.9 1.9e-52 203.8
HCH5g0050 . 46 230 HSF AT3G02990 53.1 7.3e-52 201.8
HCH11g0374 . 117 295 HSF AT3G02990 52.4 1.1e-50 198.0
HCH7g1253 . 23 234 HSF AT2G26150 55.3 8.0e-64 241.1
HCH7g0889 . 29 239 HSF AT2G26150 54.9 2.6e-62 236.1
HCH6g1129 . 23 237 HSF AT2G26150 55.1 1.4e-60 230.3
HCH10g0544 . 71 296 HSF AT2G26150 51.3 3.1e-60 229.2
HCH5g0050 . 37 227 HSF AT2G26150 50.5 2.2e-53 206.5
HCH7g1451 . 10 468 HSF AT4G13980 53.7 1.9e-121 433.0
HCH7g0889 . 29 220 HSF AT5G43840 51.0 1.4e-50 196.8
HCH5g0050 . 27 228 HSF AT5G43840 50.5 6.6e-48 188.0
HCH7g1253 . 11 357 HSF AT3G22830 52.1 1.8e-94 343.2
HCH7g0889 . 29 348 HSF AT3G22830 52.1 2.5e-88 322.8
HCH6g1129 . 25 236 HSF AT3G22830 59.4 2.5e-64 243.0
HCH7g0889 . 28 322 HSF AT3G51910 51.7 5.9e-70 261.2
HCH4g0530 . 29 223 HSF AT3G51910 54.9 2.2e-53 206.1
HCH4g0530 . 29 230 HSF AT3G63350 53.9 1.1e-50 197.2
HCH7g1253 . 36 221 HSF AT1G67970 52.4 1.2e-44 177.6
HCH7g0889 . 42 226 HSF AT1G67970 50.8 2.6e-44 176.4
HCH10g0544 . 92 303 HSF AT5G54070 52.5 2.1e-53 206.5
HCH14g0281 . 3 287 HSF AT4G36990 55.4 5.9e-73 271.2
HCH9g1375 . 13 112 HSF AT4G36990 66.0 9.0e-37 151.0
HCH5g0481 . 17 324 HSF AT4G11660 50.4 7.4e-71 264.6
HCH12g0626 . 16 122 HSF AT4G11660 72.0 7.0e-45 178.3
HCH4g0633 . 16 119 HSF AT4G11660 73.1 2.0e-44 176.8
HCH14g0281 . 2 104 HSF AT4G11660 73.8 7.7e-44 174.9
HCH8g0379 . 38 136 HSF AT4G11660 69.7 3.9e-40 162.5
HCH9g1375 . 18 212 HSF AT2G41690 59.0 2.3e-49 192.6
HCH12g0626 . 19 351 HSF AT1G46264 56.2 1.3e-90 330.1
HCH4g0633 . 19 364 HSF AT1G46264 54.0 1.4e-84 310.1
HCH14g0281 . 4 201 HSF AT1G46264 51.2 5.1e-50 195.3
HCH6g1129 . 27 130 HSF AT1G46264 72.1 1.6e-40 163.7
HCH2g0892 . 4 119 HSF AT1G46264 62.3 4.5e-38 155.6
HCH7g1451 . 9 110 HSF AT1G46264 67.6 4.9e-37 152.1
HCH10g0463 . 10 181 HSF AT3G24520 64.0 5.5e-62 235.0
HCH8g0757 . 9 183 HSF AT3G24520 65.7 7.2e-62 234.6
HCH7g1253 . 34 264 HSF AT4G17750 52.4 1.5e-60 230.7
HCH7g0889 . 40 240 HSF AT4G17750 54.8 9.4e-58 221.5
HCH4g0530 . 40 242 HSF AT4G17750 54.1 1.1e-55 214.5
HCH5g0050 . 45 230 HSF AT4G17750 54.7 5.9e-52 202.2
HCH4g0633 . 20 118 HSF AT4G17750 71.7 5.7e-39 159.1
HCH12g0626 . 20 118 HSF AT4G17750 69.7 2.2e-38 157.1
HCH5g0481 . 6 116 HSF AT4G17750 58.7 2.7e-36 150.2
HCH7g1253 . 35 239 HSF AT5G16820 55.6 2.0e-57 220.3
HCH7g0889 . 41 244 HSF AT5G16820 56.8 1.9e-55 213.8
HCH4g0530 . 41 226 HSF AT5G16820 53.9 1.8e-53 207.2
HCH5g0050 . 49 230 HSF AT5G16820 54.7 6.3e-51 198.7
HCH10g0544 . 91 273 HSF AT5G16820 50.3 1.8e-45 180.6
HCH2g0892 . 13 198 HSF AT5G16820 51.3 1.7e-43 174.1
HCH6g1129 . 4 513 HSF AT1G32330 53.0 1.9e-119 426.4
HCH7g1253 . 23 224 HSF AT1G32330 54.9 1.4e-58 224.2
HCH7g0889 . 29 240 HSF AT1G32330 52.2 3.1e-58 223.0
HCH4g0530 . 29 224 HSF AT1G32330 51.0 1.2e-52 204.5
HCH5g0050 . 37 230 HSF AT1G32330 51.5 2.6e-52 203.4
HCH3g0733 . 12 162 HSF AT1G32330 57.7 3.6e-46 183.0
HCH4g0633 . 20 117 HSF AT1G32330 71.4 2.1e-38 157.1
HCH12g0626 . 22 117 HSF AT1G32330 71.9 1.1e-37 154.8
HCH7g1253 . 35 246 HSF AT3G02990 54.3 1.4e-58 224.2
HCH7g0889 . 41 243 HSF AT3G02990 54.8 3.4e-57 219.5
HCH4g0530 . 41 222 HSF AT3G02990 52.9 1.9e-52 203.8
HCH5g0050 . 46 230 HSF AT3G02990 53.1 7.3e-52 201.8
HCH11g0374 . 117 295 HSF AT3G02990 52.4 1.1e-50 198.0
HCH7g1253 . 23 234 HSF AT2G26150 55.3 8.0e-64 241.1
HCH7g0889 . 29 239 HSF AT2G26150 54.9 2.6e-62 236.1
HCH6g1129 . 23 237 HSF AT2G26150 55.1 1.4e-60 230.3
HCH10g0544 . 71 296 HSF AT2G26150 51.3 3.1e-60 229.2
HCH5g0050 . 37 227 HSF AT2G26150 50.5 2.2e-53 206.5
HCH7g1451 . 10 468 HSF AT4G13980 53.7 1.9e-121 433.0
HCH7g0889 . 29 220 HSF AT5G43840 51.0 1.4e-50 196.8
HCH5g0050 . 27 228 HSF AT5G43840 50.5 6.6e-48 188.0
HCH7g1253 . 11 357 HSF AT3G22830 52.1 1.8e-94 343.2
HCH7g0889 . 29 348 HSF AT3G22830 52.1 2.5e-88 322.8
HCH6g1129 . 25 236 HSF AT3G22830 59.4 2.5e-64 243.0
HCH7g0889 . 28 322 HSF AT3G51910 51.7 5.9e-70 261.2
HCH4g0530 . 29 223 HSF AT3G51910 54.9 2.2e-53 206.1
HCH4g0530 . 29 230 HSF AT3G63350 53.9 1.1e-50 197.2
HCH7g1253 . 36 221 HSF AT1G67970 52.4 1.2e-44 177.6
HCH7g0889 . 42 226 HSF AT1G67970 50.8 2.6e-44 176.4
HCH10g0544 . 92 303 HSF AT5G54070 52.5 2.1e-53 206.5
HCH14g0281 . 3 287 HSF AT4G36990 55.4 5.9e-73 271.2
HCH9g1375 . 13 112 HSF AT4G36990 66.0 9.0e-37 151.0
HCH5g0481 . 17 324 HSF AT4G11660 50.4 7.4e-71 264.6
HCH12g0626 . 16 122 HSF AT4G11660 72.0 7.0e-45 178.3
HCH4g0633 . 16 119 HSF AT4G11660 73.1 2.0e-44 176.8
HCH14g0281 . 2 104 HSF AT4G11660 73.8 7.7e-44 174.9
HCH8g0379 . 38 136 HSF AT4G11660 69.7 3.9e-40 162.5
HCH9g1375 . 18 212 HSF AT2G41690 59.0 2.3e-49 192.6
HCH12g0626 . 19 351 HSF AT1G46264 56.2 1.3e-90 330.1
HCH4g0633 . 19 364 HSF AT1G46264 54.0 1.4e-84 310.1
HCH14g0281 . 4 201 HSF AT1G46264 51.2 5.1e-50 195.3
HCH6g1129 . 27 130 HSF AT1G46264 72.1 1.6e-40 163.7
HCH2g0892 . 4 119 HSF AT1G46264 62.3 4.5e-38 155.6
HCH7g1451 . 9 110 HSF AT1G46264 67.6 4.9e-37 152.1
HCH10g0463 . 10 181 HSF AT3G24520 64.0 5.5e-62 235.0
HCH8g0757 . 9 183 HSF AT3G24520 65.7 7.2e-62 234.6
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0002351 3 2 1 1 3 2 2 1 2 2 2 2 3 2 2 3 2 2 3 1 2 2 2 2 2 2 2 3 3 1 62
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
33456 PF00447 HSF_DNA-bind 4.40E-32 CL0123 HCH TF