Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
HCH4g0634 ATGGATATTGACCATGTCAAATCAGAAGAACCAATGGATATTCTAACAATGATTCATCAAATGGGAAAATTTCCAAACTTCTACGAATCAACTCAACCGCCGCCGCCGTCAACTTTTTCCGGCACCACTTCACATTACATAGAAAACCCAAATACCGTTTTCCCTGCATGCAATATTCAACCCACCATTTCCCTTCATCAACCGTCTTCTTTCCTACCCTATTCCACCGACGCCCCCGGAGCCTCCGTATCGTCACAGAAGCAAAACTCCATGGCGGCGATGAGAGAAATGATATACCGAATAGCGGCTATGCAACCGATCCATATAGATCCAGAATCAGTAAAAAGGCCAAAGAGGAGAAACGTGAAGATATCAAAGGATCCACAGAGTGTTGCAGCTAGGCTTAGGAGAGAGAAAATAAGTGAGAGAATTAGAATACTTCAGAGAATTGTTCCTGGTGGTACGAAAATGGATACGGCTTCTATGTTAGATGAAGCTATTCATTACGTCAAGTTTCTGAAAAACCAAGTGCAGTCTTTGGAAAATGTGGCGGCTGTGAATCGGCCGGAGGGTTTGGTGTTTCCGGTGGCGGTTCCCGGTGAGAGTTACTTTTCTAGATCATGTGGAAGTGAAGGAGGAGTTTGTAATGAAGATTAA 657 43.84 MDIDHVKSEEPMDILTMIHQMGKFPNFYESTQPPPPSTFSGTTSHYIENPNTVFPACNIQPTISLHQPSSFLPYSTDAPGASVSSQKQNSMAAMREMIYRIAAMQPIHIDPESVKRPKRRNVKISKDPQSVAARLRREKISERIRILQRIVPGGTKMDTASMLDEAIHYVKFLKNQVQSLENVAAVNRPEGLVFPVAVPGESYFSRSCGSEGGVCNED 218
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 4156375 4157031 + evm.model.ptg000015l.634 HCH4g0634 542878
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
HCH4g0634 218 PANTHER TRANSCRIPTION FACTOR HEC3-RELATED 36 186 IPR045843 GO:0003700(InterPro)|GO:0006355(InterPro)
HCH4g0634 218 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 128 187 IPR036638 GO:0046983(InterPro)
HCH4g0634 218 Gene3D - 123 189 IPR036638 GO:0046983(InterPro)
HCH4g0634 218 FunFam BHLH transcription factor 127 191 - -
HCH4g0634 218 CDD bHLH_AtIND_like 125 182 - -
HCH4g0634 218 Coils Coil 163 183 - -
HCH4g0634 218 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 124 173 IPR011598 GO:0046983(InterPro)
HCH4g0634 218 SMART finulus 130 179 IPR011598 GO:0046983(InterPro)
HCH4g0634 218 Pfam Helix-loop-helix DNA-binding domain 133 174 IPR011598 GO:0046983(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
HCH12g0625 HCH-Chr12:3745148 HCH4g0634 HCH-Chr4:4156375 8.40E-47 dispersed
HCH14g0137 HCH-Chr14:23587551 HCH4g0634 HCH-Chr4:4156375 1.10E-34 dispersed
HCH14g1050 HCH-Chr14:37608479 HCH4g0634 HCH-Chr4:4156375 9.20E-06 dispersed
HCH2g0057 HCH-Chr2:4027867 HCH4g0634 HCH-Chr4:4156375 3.70E-39 dispersed
HCH4g0634 HCH-Chr4:4156375 HCH4g1459 HCH-Chr4:10890983 4.90E-27 dispersed
HCH4g0628 HCH-Chr4:4118902 HCH4g0634 HCH-Chr4:4156375 7.40E-07 proximal
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
33457 PF00010 HLH 2.80E-06 No_clan HCH TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
HCH4g0634 - - - 0.0