Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
HCH4g0636 | ATGAATTTCAGGGATTTTGGGAATGATCCACCTGCCGGAAATGGCGGCGGAGGTGGTGGAAAACTTCCGGGGAACTATCCGTTAGCCCGACAATCCTCGATCTATTCGCTGACCTTTGATGAGTTTCAGAGCATGGGTAGTATAGGTAAGGATTTTGGGTCTATGAATATGGATGAGTTGTTGAAAAATATTTGGAGTGCTGAAGAAATGCAAACTATGGCATCTTCTAGTGCTGTTGCCAAAGAGGGGGTTGGTAGTGTAGGTGGTACCGGAATCAATCTGCAGCGGCAGGGCTCTTTGACACTTCCCCGTACATTGAGCCAGAAGAAGGTGGATGATGTGTGGAAGGATCTAGTCAAGGAACATGGAGGATCGAAAGATGCCGGTACCACTATTGGGTCGAATTTGCAACAGAGACAGCAAACTCTTGGGGAGATGACACTTGAAGAGTTTTTGTTCAGAGCTGGAGTGGTGAGAGAGGATGCTCAAGTGTCAGGAAACCTTATCAATGGAGGAGGGCTTTTTGGCAATACCAATGGTTTTGCAGTCGGATTTCAGCAGCAGGCTAAGATTCCTGAGAATAATAATCAGATTCCGATTCAATCGTCGAATTTATCGTTGAATGTTAATGGAGTTAGAGCAAGTCAACATCAGCAGCAGCCAATATTTCCAAAGCAGACTGCTGTTACATATGGATCTCAGTTGCCTTTACCCAGTAATGGTCAGCTGGCTAGTCCAGGAATTAGAGTCGGGATTTTGGGAATTGCGGATCAAGGGTTGAACACAAATCTGATACAAGGCTCTGCACTGCAGGGTGGAAGGCCGGGAGTAGTTAGTTTAGCTGCTGGGCCGGTACCCGTTGCGATAGAATCGCCAGCAAACCAACTGTCATCTGATGGGATTGGGAAGAGTAATGGGGATACATCGTCTGTGTCTCCTGTACCCTATGTATTCAATGTCGGATTGAGAGGGAGAAGAAGTAATGGGACTGTGGACAAGGTTGTTGAGAGGAGGCAGAGGAGAATGATAAAAAACAGAGAGTCAGCTGCTAGGTCACGGGCTCGGAAGCAGGCTTACACTATGGAATTGGAAGCAGAAGTTGCAAAGCTAAAAGAGGAGAACGACGAACTGCGGCAAAAACAGACAGAAATCGTGGAAATGCAGAAGAACCGGGCAATGGAACTAATGGATAAGCAACAAGGAAGCAAGAAACAATGCTTAAGACGAACACAAACTGGTCCGTGGTGA | 1248 | 46.55 | MNFRDFGNDPPAGNGGGGGGKLPGNYPLARQSSIYSLTFDEFQSMGSIGKDFGSMNMDELLKNIWSAEEMQTMASSSAVAKEGVGSVGGTGINLQRQGSLTLPRTLSQKKVDDVWKDLVKEHGGSKDAGTTIGSNLQQRQQTLGEMTLEEFLFRAGVVREDAQVSGNLINGGGLFGNTNGFAVGFQQQAKIPENNNQIPIQSSNLSLNVNGVRASQHQQQPIFPKQTAVTYGSQLPLPSNGQLASPGIRVGILGIADQGLNTNLIQGSALQGGRPGVVSLAAGPVPVAIESPANQLSSDGIGKSNGDTSSVSPVPYVFNVGLRGRRSNGTVDKVVERRQRRMIKNRESAARSRARKQAYTMELEAEVAKLKEENDELRQKQTEIVEMQKNRAMELMDKQQGSKKQCLRRTQTGPW | 415 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
4 | 4168066 | 4170792 | - | evm.model.ptg000015l.636 | HCH4g0636 | 542880 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
HCH4g0636 | 415 | ProSitePatterns | Basic-leucine zipper (bZIP) domain signature. | 340 | 355 | IPR004827 | GO:0003700(InterPro)|GO:0006355(InterPro) | |
HCH4g0636 | 415 | ProSiteProfiles | Basic-leucine zipper (bZIP) domain profile. | 335 | 384 | IPR004827 | GO:0003700(InterPro)|GO:0006355(InterPro) | |
HCH4g0636 | 415 | Coils | Coil | 353 | 390 | - | - | |
HCH4g0636 | 415 | CDD | bZIP_plant_BZIP46 | 337 | 384 | - | - | |
HCH4g0636 | 415 | PANTHER | CAMP-RESPONSE ELEMENT BINDING PROTEIN-RELATED | 30 | 414 | IPR043452 | GO:0003700(InterPro)|GO:0005634(PANTHER)|GO:0045893(InterPro) | |
HCH4g0636 | 415 | SMART | brlzneu | 333 | 397 | IPR004827 | GO:0003700(InterPro)|GO:0006355(InterPro) | |
HCH4g0636 | 415 | Pfam | bZIP transcription factor | 337 | 389 | IPR004827 | GO:0003700(InterPro)|GO:0006355(InterPro) | |
HCH4g0636 | 415 | Gene3D | - | 335 | 392 | - | - | |
HCH4g0636 | 415 | FunFam | ABSCISIC ACID-INSENSITIVE 5-like protein 5 | 335 | 392 | - | - | |
HCH4g0636 | 415 | MobiDBLite | consensus disorder prediction | 1 | 25 | - | - | |
HCH4g0636 | 415 | MobiDBLite | consensus disorder prediction | 394 | 415 | - | - | |
HCH4g0636 | 415 | SUPERFAMILY | Leucine zipper domain | 337 | 385 | IPR046347 | GO:0003700(InterPro)|GO:0006355(InterPro) |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
HCH11g0405 | HCH-Chr11:3998659 | HCH4g0636 | HCH-Chr4:4168066 | 7.40E-38 | dispersed | |
HCH2g1268 | HCH-Chr2:54939095 | HCH4g0636 | HCH-Chr4:4168066 | 2.70E-30 | dispersed | |
HCH4g0636 | HCH-Chr4:4168066 | HCH8g0524 | HCH-Chr8:41989245 | 2.60E-16 | dispersed | |
HCH12g0620 | HCH-Chr12:3706984 | HCH4g0636 | HCH-Chr4:4168066 | 7.50E-79 | transposed | |
HCH13g0293 | HCH-Chr13:1940985 | HCH4g0636 | HCH-Chr4:4168066 | 3.70E-31 | transposed | |
HCH13g1332 | HCH-Chr13:41246838 | HCH4g0636 | HCH-Chr4:4168066 | 3.20E-11 | transposed | |
HCH4g0636 | HCH-Chr4:4168066 | HCH7g0649 | HCH-Chr7:6573027 | 3.50E-90 | wgd |
Transcription factors information

Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
---|---|---|---|---|---|---|---|
33458 | PF00170 | bZIP_1 | 6.50E-13 | CL0018 | HCH | TF |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
HCH4g0636 | K14432 | - | csv:101223043 | 610.912 |