Gene search


Sequence information


Select Gene Cds Cds_length GC_content Pep Pep_length
HCH4g0636 ATGAATTTCAGGGATTTTGGGAATGATCCACCTGCCGGAAATGGCGGCGGAGGTGGTGGAAAACTTCCGGGGAACTATCCGTTAGCCCGACAATCCTCGATCTATTCGCTGACCTTTGATGAGTTTCAGAGCATGGGTAGTATAGGTAAGGATTTTGGGTCTATGAATATGGATGAGTTGTTGAAAAATATTTGGAGTGCTGAAGAAATGCAAACTATGGCATCTTCTAGTGCTGTTGCCAAAGAGGGGGTTGGTAGTGTAGGTGGTACCGGAATCAATCTGCAGCGGCAGGGCTCTTTGACACTTCCCCGTACATTGAGCCAGAAGAAGGTGGATGATGTGTGGAAGGATCTAGTCAAGGAACATGGAGGATCGAAAGATGCCGGTACCACTATTGGGTCGAATTTGCAACAGAGACAGCAAACTCTTGGGGAGATGACACTTGAAGAGTTTTTGTTCAGAGCTGGAGTGGTGAGAGAGGATGCTCAAGTGTCAGGAAACCTTATCAATGGAGGAGGGCTTTTTGGCAATACCAATGGTTTTGCAGTCGGATTTCAGCAGCAGGCTAAGATTCCTGAGAATAATAATCAGATTCCGATTCAATCGTCGAATTTATCGTTGAATGTTAATGGAGTTAGAGCAAGTCAACATCAGCAGCAGCCAATATTTCCAAAGCAGACTGCTGTTACATATGGATCTCAGTTGCCTTTACCCAGTAATGGTCAGCTGGCTAGTCCAGGAATTAGAGTCGGGATTTTGGGAATTGCGGATCAAGGGTTGAACACAAATCTGATACAAGGCTCTGCACTGCAGGGTGGAAGGCCGGGAGTAGTTAGTTTAGCTGCTGGGCCGGTACCCGTTGCGATAGAATCGCCAGCAAACCAACTGTCATCTGATGGGATTGGGAAGAGTAATGGGGATACATCGTCTGTGTCTCCTGTACCCTATGTATTCAATGTCGGATTGAGAGGGAGAAGAAGTAATGGGACTGTGGACAAGGTTGTTGAGAGGAGGCAGAGGAGAATGATAAAAAACAGAGAGTCAGCTGCTAGGTCACGGGCTCGGAAGCAGGCTTACACTATGGAATTGGAAGCAGAAGTTGCAAAGCTAAAAGAGGAGAACGACGAACTGCGGCAAAAACAGACAGAAATCGTGGAAATGCAGAAGAACCGGGCAATGGAACTAATGGATAAGCAACAAGGAAGCAAGAAACAATGCTTAAGACGAACACAAACTGGTCCGTGGTGA 1248 46.55 MNFRDFGNDPPAGNGGGGGGKLPGNYPLARQSSIYSLTFDEFQSMGSIGKDFGSMNMDELLKNIWSAEEMQTMASSSAVAKEGVGSVGGTGINLQRQGSLTLPRTLSQKKVDDVWKDLVKEHGGSKDAGTTIGSNLQQRQQTLGEMTLEEFLFRAGVVREDAQVSGNLINGGGLFGNTNGFAVGFQQQAKIPENNNQIPIQSSNLSLNVNGVRASQHQQQPIFPKQTAVTYGSQLPLPSNGQLASPGIRVGILGIADQGLNTNLIQGSALQGGRPGVVSLAAGPVPVAIESPANQLSSDGIGKSNGDTSSVSPVPYVFNVGLRGRRSNGTVDKVVERRQRRMIKNRESAARSRARKQAYTMELEAEVAKLKEENDELRQKQTEIVEMQKNRAMELMDKQQGSKKQCLRRTQTGPW 415
       

Gff information


Chromosome Start End Strand Old_gene Gene Num
4 4168066 4170792 - evm.model.ptg000015l.636 HCH4g0636 542880
       

Annotation information


Select Seq ID Length Analysis Description Start End IPR GO
HCH4g0636 415 ProSitePatterns Basic-leucine zipper (bZIP) domain signature. 340 355 IPR004827 GO:0003700(InterPro)|GO:0006355(InterPro)
HCH4g0636 415 ProSiteProfiles Basic-leucine zipper (bZIP) domain profile. 335 384 IPR004827 GO:0003700(InterPro)|GO:0006355(InterPro)
HCH4g0636 415 Coils Coil 353 390 - -
HCH4g0636 415 CDD bZIP_plant_BZIP46 337 384 - -
HCH4g0636 415 PANTHER CAMP-RESPONSE ELEMENT BINDING PROTEIN-RELATED 30 414 IPR043452 GO:0003700(InterPro)|GO:0005634(PANTHER)|GO:0045893(InterPro)
HCH4g0636 415 SMART brlzneu 333 397 IPR004827 GO:0003700(InterPro)|GO:0006355(InterPro)
HCH4g0636 415 Pfam bZIP transcription factor 337 389 IPR004827 GO:0003700(InterPro)|GO:0006355(InterPro)
HCH4g0636 415 Gene3D - 335 392 - -
HCH4g0636 415 FunFam ABSCISIC ACID-INSENSITIVE 5-like protein 5 335 392 - -
HCH4g0636 415 MobiDBLite consensus disorder prediction 1 25 - -
HCH4g0636 415 MobiDBLite consensus disorder prediction 394 415 - -
HCH4g0636 415 SUPERFAMILY Leucine zipper domain 337 385 IPR046347 GO:0003700(InterPro)|GO:0006355(InterPro)
       

Duplication type information


Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
HCH11g0405 HCH-Chr11:3998659 HCH4g0636 HCH-Chr4:4168066 7.40E-38 dispersed
HCH2g1268 HCH-Chr2:54939095 HCH4g0636 HCH-Chr4:4168066 2.70E-30 dispersed
HCH4g0636 HCH-Chr4:4168066 HCH8g0524 HCH-Chr8:41989245 2.60E-16 dispersed
HCH12g0620 HCH-Chr12:3706984 HCH4g0636 HCH-Chr4:4168066 7.50E-79 transposed
HCH13g0293 HCH-Chr13:1940985 HCH4g0636 HCH-Chr4:4168066 3.70E-31 transposed
HCH13g1332 HCH-Chr13:41246838 HCH4g0636 HCH-Chr4:4168066 3.20E-11 transposed
HCH4g0636 HCH-Chr4:4168066 HCH7g0649 HCH-Chr7:6573027 3.50E-90 wgd
       

Transcription factors information


Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
33458 PF00170 bZIP_1 6.50E-13 CL0018 HCH TF
       

Pathway information


Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
HCH4g0636 K14432 - csv:101223043 610.912