Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
HCH4g0643 | ATGAACGGTGGTGATGGCACAGTGAGGCTTGGAGCTCTGAATTTGAAGCCGGATCGTGGCGGCGGTGGCGGAGGAGGAGGATTTGATTTGGCGGCTGATGTGTCAGTTTCGTCACCGGTGACGAGGCAGAAAGCCACTGCTGCTAAACAATTCATAGAGAATCATTATAAGAATTATCTCCAAGGTCTACAGGATCGGAAAGATAGGCGTCGAGCACTTCAACGAAAAGCGCAAGAAGCTCAGATGTCAACTGAGGAAGAAGAAGAGATGATGAGAAGCTTAGAACGGAGAGAAACAGAATTTATGAGGTTGCAAAGACGTAAAATTGGGATTGATGATTTTGAACAATTAACAGTTATTGGTAAAGGCGCATTCGGTGAGGTCAGGTTATGTCGTGCAAAAGGAACAGGGGAAATTTTTGCCATGAAGAAACTGAAGAAATCAGAGATGCTTAGCCGTGGGCAGGTTGAGCATGTCCGGTCCGAGAGGAATTTACTTGCAGAGGTTGATAGTCGATGCATTGTGAAACTCTTCTATTCTTTTCAAGATTCTGAATTCCTATATCTTATCATGGAGTATTTACATGGTGGTGACATTATGACTTTACTAATGAGAGAAGACATTCTGTCAGAGGATGTTGCTCGATTTTACATAGCAGAAAGCATTCTAGCCATTCATTCAATTCATCAGCACAATTATATACACAGGGATATAAAACCAGATAACCTGATACTAGATAAAAATGGTCATCTGAAGCTTTCAGATTTTGGCTTATGTAAACCTCTGGATGATAAGTATTCAACTATACTTTTGAATGATGAAGATTTTACAGCGCAGCAGGCCAAAAGTGAAATTCAAGGTCATTCTGACTCTGATGGAACCCATTGGATGATGCCAAAAGAGCAGATTCAACAGTGGAAGCGCAATCGTCGTGCATTGGCTTATTCAACTGTTGGAACGCTTGATTATATGGCACCGGAAGTATTGCTTAAGAAAGGATATGGAATGGAGTGTGATTGGTGGTCATTAGGGGCTATATTGTATGAGATGGTGGTTGGTTATCCCCCCTTTTGTTCTGATGATCCAAGGATCACTTTCCGTAAGATCATAAATTGGAGAACTTGCCTGAAATTCCCCGAGGAACCAAAAATATCAGAGGAAGCTAAGGATTTGATCTGCCACTTGTTATGCGATGTTGAAACAAGGTTGGGAACACGAAGAGTGGAAGAAATAAAGGCACATCCATGGTTCCACTGCATTCAATGGGATAAGCTGTATGAAATGGAAGCTGCATATAAACCAACGGTTTCTGGAGAACTAGACACACAGAACTTTGAGAAGTTTCCAGAAGTTCAAGATCCCCCATCAGAAATGCCCACTGTTGGACCTTGGAGGAAGATGTTGACTTCAAAAGATACCAATTTCATTGGATTTACTTTTAAGAAATCAAATGTCCCGAAATCACTTGAAAGTACAGGCACGGATTTGCAATCAAATGGATCATCAAAAACCCCATCTTTGATCTCCTTGTTGGGTCGGATAGACTTTCAAGAATCTGCGATACCAGAAATTGACCAAAAGCAGGAAGCATAA | 1593 | 41.49 | MNGGDGTVRLGALNLKPDRGGGGGGGGFDLAADVSVSSPVTRQKATAAKQFIENHYKNYLQGLQDRKDRRRALQRKAQEAQMSTEEEEEMMRSLERRETEFMRLQRRKIGIDDFEQLTVIGKGAFGEVRLCRAKGTGEIFAMKKLKKSEMLSRGQVEHVRSERNLLAEVDSRCIVKLFYSFQDSEFLYLIMEYLHGGDIMTLLMREDILSEDVARFYIAESILAIHSIHQHNYIHRDIKPDNLILDKNGHLKLSDFGLCKPLDDKYSTILLNDEDFTAQQAKSEIQGHSDSDGTHWMMPKEQIQQWKRNRRALAYSTVGTLDYMAPEVLLKKGYGMECDWWSLGAILYEMVVGYPPFCSDDPRITFRKIINWRTCLKFPEEPKISEEAKDLICHLLCDVETRLGTRRVEEIKAHPWFHCIQWDKLYEMEAAYKPTVSGELDTQNFEKFPEVQDPPSEMPTVGPWRKMLTSKDTNFIGFTFKKSNVPKSLESTGTDLQSNGSSKTPSLISLLGRIDFQESAIPEIDQKQEA | 530 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
4 | 4208583 | 4213621 | + | evm.model.ptg000015l.643 | HCH4g0643 | 542887 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
HCH4g0643 | 530 | ProSiteProfiles | Protein kinase domain profile. | 114 | 417 | IPR000719 | GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro) | |
HCH4g0643 | 530 | ProSiteProfiles | AGC-kinase C-terminal domain profile. | 418 | 490 | IPR000961 | GO:0004674(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro) | |
HCH4g0643 | 530 | Gene3D | Phosphorylase Kinase; domain 1 | 436 | 446 | - | - | |
HCH4g0643 | 530 | Gene3D | Phosphorylase Kinase; domain 1 | 111 | 197 | - | - | |
HCH4g0643 | 530 | Pfam | Protein kinase C terminal domain | 436 | 480 | IPR017892 | GO:0004674(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro) | |
HCH4g0643 | 530 | SMART | serkin_6 | 114 | 417 | IPR000719 | GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro) | |
HCH4g0643 | 530 | ProSitePatterns | Protein kinases ATP-binding region signature. | 120 | 143 | IPR017441 | GO:0005524(InterPro) | |
HCH4g0643 | 530 | Coils | Coil | 63 | 97 | - | - | |
HCH4g0643 | 530 | CDD | STKc_NDR_like | 112 | 481 | - | - | |
HCH4g0643 | 530 | SUPERFAMILY | Protein kinase-like (PK-like) | 111 | 468 | IPR011009 | - | |
HCH4g0643 | 530 | PANTHER | SERINE/THREONINE-PROTEIN KINASE | 46 | 484 | IPR050236 | GO:0004674(PANTHER)|GO:0018105(PANTHER)|GO:0035556(PANTHER) | |
HCH4g0643 | 530 | FunFam | Non-specific serine/threonine protein kinase | 85 | 197 | - | - | |
HCH4g0643 | 530 | Pfam | Protein kinase domain | 314 | 417 | IPR000719 | GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro) | |
HCH4g0643 | 530 | Pfam | Protein kinase domain | 114 | 267 | IPR000719 | GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro) | |
HCH4g0643 | 530 | CDD | MobB_NDR_LATS-like | 48 | 109 | - | - | |
HCH4g0643 | 530 | Gene3D | Transferase(Phosphotransferase) domain 1 | 316 | 435 | - | - | |
HCH4g0643 | 530 | Gene3D | Transferase(Phosphotransferase) domain 1 | 198 | 278 | - | - | |
HCH4g0643 | 530 | ProSitePatterns | Serine/Threonine protein kinases active-site signature. | 233 | 245 | IPR008271 | GO:0004672(InterPro)|GO:0006468(InterPro) | |
HCH4g0643 | 530 | SMART | pkinase_C_6 | 418 | 482 | IPR000961 | GO:0004674(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro) | |
HCH4g0643 | 530 | FunFam | Non-specific serine/threonine protein kinase | 316 | 435 | - | - | |
HCH4g0643 | 530 | FunFam | Non-specific serine/threonine protein kinase | 198 | 265 | - | - |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
HCH4g0643 | HCH-Chr4:4208583 | HCH6g1494 | HCH-Chr6:48512087 | 2.80E-169 | dispersed | |
HCH4g0643 | HCH-Chr4:4208583 | HCH12g0486 | HCH-Chr12:2843049 | 1.00E-163 | transposed |
Transcription factors information

Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
---|---|---|---|---|---|---|---|
81455 | PF00069 | Pkinase | 9.70E-65 | CL0016 | HCH | PK |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
HCH4g0643 | K08790 | - | csv:101222805 | 954.125 |