Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
HCH4g0643 ATGAACGGTGGTGATGGCACAGTGAGGCTTGGAGCTCTGAATTTGAAGCCGGATCGTGGCGGCGGTGGCGGAGGAGGAGGATTTGATTTGGCGGCTGATGTGTCAGTTTCGTCACCGGTGACGAGGCAGAAAGCCACTGCTGCTAAACAATTCATAGAGAATCATTATAAGAATTATCTCCAAGGTCTACAGGATCGGAAAGATAGGCGTCGAGCACTTCAACGAAAAGCGCAAGAAGCTCAGATGTCAACTGAGGAAGAAGAAGAGATGATGAGAAGCTTAGAACGGAGAGAAACAGAATTTATGAGGTTGCAAAGACGTAAAATTGGGATTGATGATTTTGAACAATTAACAGTTATTGGTAAAGGCGCATTCGGTGAGGTCAGGTTATGTCGTGCAAAAGGAACAGGGGAAATTTTTGCCATGAAGAAACTGAAGAAATCAGAGATGCTTAGCCGTGGGCAGGTTGAGCATGTCCGGTCCGAGAGGAATTTACTTGCAGAGGTTGATAGTCGATGCATTGTGAAACTCTTCTATTCTTTTCAAGATTCTGAATTCCTATATCTTATCATGGAGTATTTACATGGTGGTGACATTATGACTTTACTAATGAGAGAAGACATTCTGTCAGAGGATGTTGCTCGATTTTACATAGCAGAAAGCATTCTAGCCATTCATTCAATTCATCAGCACAATTATATACACAGGGATATAAAACCAGATAACCTGATACTAGATAAAAATGGTCATCTGAAGCTTTCAGATTTTGGCTTATGTAAACCTCTGGATGATAAGTATTCAACTATACTTTTGAATGATGAAGATTTTACAGCGCAGCAGGCCAAAAGTGAAATTCAAGGTCATTCTGACTCTGATGGAACCCATTGGATGATGCCAAAAGAGCAGATTCAACAGTGGAAGCGCAATCGTCGTGCATTGGCTTATTCAACTGTTGGAACGCTTGATTATATGGCACCGGAAGTATTGCTTAAGAAAGGATATGGAATGGAGTGTGATTGGTGGTCATTAGGGGCTATATTGTATGAGATGGTGGTTGGTTATCCCCCCTTTTGTTCTGATGATCCAAGGATCACTTTCCGTAAGATCATAAATTGGAGAACTTGCCTGAAATTCCCCGAGGAACCAAAAATATCAGAGGAAGCTAAGGATTTGATCTGCCACTTGTTATGCGATGTTGAAACAAGGTTGGGAACACGAAGAGTGGAAGAAATAAAGGCACATCCATGGTTCCACTGCATTCAATGGGATAAGCTGTATGAAATGGAAGCTGCATATAAACCAACGGTTTCTGGAGAACTAGACACACAGAACTTTGAGAAGTTTCCAGAAGTTCAAGATCCCCCATCAGAAATGCCCACTGTTGGACCTTGGAGGAAGATGTTGACTTCAAAAGATACCAATTTCATTGGATTTACTTTTAAGAAATCAAATGTCCCGAAATCACTTGAAAGTACAGGCACGGATTTGCAATCAAATGGATCATCAAAAACCCCATCTTTGATCTCCTTGTTGGGTCGGATAGACTTTCAAGAATCTGCGATACCAGAAATTGACCAAAAGCAGGAAGCATAA 1593 41.49 MNGGDGTVRLGALNLKPDRGGGGGGGGFDLAADVSVSSPVTRQKATAAKQFIENHYKNYLQGLQDRKDRRRALQRKAQEAQMSTEEEEEMMRSLERRETEFMRLQRRKIGIDDFEQLTVIGKGAFGEVRLCRAKGTGEIFAMKKLKKSEMLSRGQVEHVRSERNLLAEVDSRCIVKLFYSFQDSEFLYLIMEYLHGGDIMTLLMREDILSEDVARFYIAESILAIHSIHQHNYIHRDIKPDNLILDKNGHLKLSDFGLCKPLDDKYSTILLNDEDFTAQQAKSEIQGHSDSDGTHWMMPKEQIQQWKRNRRALAYSTVGTLDYMAPEVLLKKGYGMECDWWSLGAILYEMVVGYPPFCSDDPRITFRKIINWRTCLKFPEEPKISEEAKDLICHLLCDVETRLGTRRVEEIKAHPWFHCIQWDKLYEMEAAYKPTVSGELDTQNFEKFPEVQDPPSEMPTVGPWRKMLTSKDTNFIGFTFKKSNVPKSLESTGTDLQSNGSSKTPSLISLLGRIDFQESAIPEIDQKQEA 530
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 4208583 4213621 + evm.model.ptg000015l.643 HCH4g0643 542887
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
HCH4g0643 530 ProSiteProfiles Protein kinase domain profile. 114 417 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
HCH4g0643 530 ProSiteProfiles AGC-kinase C-terminal domain profile. 418 490 IPR000961 GO:0004674(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
HCH4g0643 530 Gene3D Phosphorylase Kinase; domain 1 436 446 - -
HCH4g0643 530 Gene3D Phosphorylase Kinase; domain 1 111 197 - -
HCH4g0643 530 Pfam Protein kinase C terminal domain 436 480 IPR017892 GO:0004674(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
HCH4g0643 530 SMART serkin_6 114 417 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
HCH4g0643 530 ProSitePatterns Protein kinases ATP-binding region signature. 120 143 IPR017441 GO:0005524(InterPro)
HCH4g0643 530 Coils Coil 63 97 - -
HCH4g0643 530 CDD STKc_NDR_like 112 481 - -
HCH4g0643 530 SUPERFAMILY Protein kinase-like (PK-like) 111 468 IPR011009 -
HCH4g0643 530 PANTHER SERINE/THREONINE-PROTEIN KINASE 46 484 IPR050236 GO:0004674(PANTHER)|GO:0018105(PANTHER)|GO:0035556(PANTHER)
HCH4g0643 530 FunFam Non-specific serine/threonine protein kinase 85 197 - -
HCH4g0643 530 Pfam Protein kinase domain 314 417 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
HCH4g0643 530 Pfam Protein kinase domain 114 267 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
HCH4g0643 530 CDD MobB_NDR_LATS-like 48 109 - -
HCH4g0643 530 Gene3D Transferase(Phosphotransferase) domain 1 316 435 - -
HCH4g0643 530 Gene3D Transferase(Phosphotransferase) domain 1 198 278 - -
HCH4g0643 530 ProSitePatterns Serine/Threonine protein kinases active-site signature. 233 245 IPR008271 GO:0004672(InterPro)|GO:0006468(InterPro)
HCH4g0643 530 SMART pkinase_C_6 418 482 IPR000961 GO:0004674(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
HCH4g0643 530 FunFam Non-specific serine/threonine protein kinase 316 435 - -
HCH4g0643 530 FunFam Non-specific serine/threonine protein kinase 198 265 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
HCH4g0643 HCH-Chr4:4208583 HCH6g1494 HCH-Chr6:48512087 2.80E-169 dispersed
HCH4g0643 HCH-Chr4:4208583 HCH12g0486 HCH-Chr12:2843049 1.00E-163 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
81455 PF00069 Pkinase 9.70E-65 CL0016 HCH PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
HCH4g0643 K08790 - csv:101222805 954.125