Gene search


Sequence information


Select Gene Cds Cds_length GC_content Pep Pep_length
HCH4g0644 ATGGGTGAAAATTTAGCACCCATTTTCATCTTTCTCCTTTCTCTTGTTTTGTTTTGGCTAGTTTTTATGGAAATTAGAAAGAAGAAGAGGAGAGAGCGGCTGTTGCCTCCAGGTTCAATGGGTTGGCCGTTGATTGGAGAGACCTGTCATCTCTATTCTCAAGATCCAAGTATCTTCTTTGCTGGAAAACAAAAAAGGTATGGAGAGATATTCAAGACTCACATTCTTGGATGTCCTTGCGTGATGTTAGCAAGTCCTGAGGCAGCTAGGTTTGTGCTGGTGACAAAGGCGCATCTCTTCAAGCCTACTTTCCCCAAAAGCAAGGAGCGTCTCATCGGTCCATCGGCTTTGTTTTTCCATCAAAACGATACTCATTTGCGTCTCAGGAAGCTCGTTCAGACCTCCCTCTCCCCCGAGCCTATTCGCAATTTGGTCCCTCACATTAACTCCCTCGCTGCCTCTACATTAGCGTCTTGGCTCCATGGACATGTTATCAAGACCTTCCAAGAAATGAAAAAGTTTTCTTTTGAAGTCGGAATATTGGCAATTTTTGGACATTTGGAAGCTGTTTACAGAGAAGAGTTACAGAAAAACTATTCCACAGTGAACAGAGGCTATAATTCTTTTCCTACTAACATTCCAGGAACCCCTTACAAAAAGGCACTCACAGCAAGAGAGAGGCTGAGTGAGATCATAAGCAATATTATCTTTGAGAGAAGAAAGGAGAGAAAGGAGCTGCCTGAAAAGAATCTCTTGGGCTATTTACTTAGTTGGAGAAATGAAAAGGGAGAAAGTTTAAGTGATGAGCAGATAGCTGATAATATAATTGGAGTGCTTTTTGCTGCTCAAGATACAACTGCAAGTGCTCTCACATGGATTGTTCAATATCTTCACAATGACCAGAAAGTTCTAGAAGCTGTAAAGGCTGAACAGAAAGCAGTTGAAGAATCTATTAACGCAGGTAACCGACCAATTAGCTGGTCTCAAACAAGGAAAATGACACTTACCAACAAGGTGGTATTAGAGAGCTTGAGAATGGCAAGCATTATATCCTTCACCTATAGGGAAGCTGTGGCAGATGTTGAATACAATGGATATTTAATTCCAAAGGGTTGGAAAGTAATGCCTTTGTTCAGGAATATTCATCACAATCCTGACTACTTTTTTGACCCTCAGAAATTTGATCCTTCAAGATTTGAGGTGGCTCCTAAGCCCAATACTTTCATGCCATTTGGCAGTGGGGTTCATGCCTGCCCTGGAAATGAACTTGCCAAGCTTGAGATCTTGATTATGATCCACCATTTAGTCACCAAATTCAGGTGGGAATTTGAAGGGCACCAAAATGGGATTCAGTATGCCCCATTCCCAGTGCCTTTGCATGGCCTTCCAATCAGAGTTTGGAGATTATCTACTTGA 1416 41.95 MGENLAPIFIFLLSLVLFWLVFMEIRKKKRRERLLPPGSMGWPLIGETCHLYSQDPSIFFAGKQKRYGEIFKTHILGCPCVMLASPEAARFVLVTKAHLFKPTFPKSKERLIGPSALFFHQNDTHLRLRKLVQTSLSPEPIRNLVPHINSLAASTLASWLHGHVIKTFQEMKKFSFEVGILAIFGHLEAVYREELQKNYSTVNRGYNSFPTNIPGTPYKKALTARERLSEIISNIIFERRKERKELPEKNLLGYLLSWRNEKGESLSDEQIADNIIGVLFAAQDTTASALTWIVQYLHNDQKVLEAVKAEQKAVEESINAGNRPISWSQTRKMTLTNKVVLESLRMASIISFTYREAVADVEYNGYLIPKGWKVMPLFRNIHHNPDYFFDPQKFDPSRFEVAPKPNTFMPFGSGVHACPGNELAKLEILIMIHHLVTKFRWEFEGHQNGIQYAPFPVPLHGLPIRVWRLST 471
       

Gff information


Chromosome Start End Strand Old_gene Gene Num
4 4222083 4225222 + evm.model.ptg000015l.644 HCH4g0644 542888
       

Annotation information


Select Seq ID Length Analysis Description Start End IPR GO
HCH4g0644 471 PRINTS E-class P450 group I signature 64 83 IPR002401 GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro)
HCH4g0644 471 PRINTS E-class P450 group I signature 418 441 IPR002401 GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro)
HCH4g0644 471 PRINTS E-class P450 group I signature 377 401 IPR002401 GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro)
HCH4g0644 471 PRINTS E-class P450 group I signature 408 418 IPR002401 GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro)
HCH4g0644 471 PRINTS E-class P450 group I signature 337 355 IPR002401 GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro)
HCH4g0644 471 PRINTS E-class P450 group I signature 270 287 IPR002401 GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro)
HCH4g0644 471 Pfam Cytochrome P450 36 445 IPR001128 GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro)
HCH4g0644 471 ProSitePatterns Cytochrome P450 cysteine heme-iron ligand signature. 411 420 IPR017972 GO:0005506(InterPro)|GO:0016705(InterPro)
HCH4g0644 471 PANTHER CYTOCHROME P450 26 35 445 - GO:0004497(PANTHER)|GO:0010295(PANTHER)|GO:0016125(PANTHER)|GO:0016491(PANTHER)
HCH4g0644 471 FunFam Abscisic acid 8 25 468 - -
HCH4g0644 471 Gene3D Cytochrome P450 24 469 IPR036396 GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro)
HCH4g0644 471 CDD CYP90-like 64 466 - -
HCH4g0644 471 PRINTS P450 superfamily signature 281 298 IPR001128 GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro)
HCH4g0644 471 PRINTS P450 superfamily signature 409 418 IPR001128 GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro)
HCH4g0644 471 PRINTS P450 superfamily signature 418 429 IPR001128 GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro)
HCH4g0644 471 PRINTS P450 superfamily signature 338 349 IPR001128 GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro)
HCH4g0644 471 SUPERFAMILY Cytochrome P450 30 467 IPR036396 GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro)
       

Duplication type information


Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
HCH4g0644 HCH-Chr4:4222083 HCH7g1495 HCH-Chr7:47560376 5.20E-74 dispersed
HCH12g0616 HCH-Chr12:3676969 HCH4g0644 HCH-Chr4:4222083 3.60E-187 transposed
HCH14g1060 HCH-Chr14:37651953 HCH4g0644 HCH-Chr4:4222083 1.50E-18 transposed
HCH3g1387 HCH-Chr3:51854404 HCH4g0644 HCH-Chr4:4222083 2.90E-143 transposed
HCH6g1312 HCH-Chr6:47261063 HCH4g0644 HCH-Chr4:4222083 5.90E-155 transposed
HCH4g0644 HCH-Chr4:4222083 HCH7g0640 HCH-Chr7:6303776 6.00E-187 wgd
       

Pathway information


Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
HCH4g0644 K09843 - vvi:100245540 691.034