Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| HCH4g0644 | ATGGGTGAAAATTTAGCACCCATTTTCATCTTTCTCCTTTCTCTTGTTTTGTTTTGGCTAGTTTTTATGGAAATTAGAAAGAAGAAGAGGAGAGAGCGGCTGTTGCCTCCAGGTTCAATGGGTTGGCCGTTGATTGGAGAGACCTGTCATCTCTATTCTCAAGATCCAAGTATCTTCTTTGCTGGAAAACAAAAAAGGTATGGAGAGATATTCAAGACTCACATTCTTGGATGTCCTTGCGTGATGTTAGCAAGTCCTGAGGCAGCTAGGTTTGTGCTGGTGACAAAGGCGCATCTCTTCAAGCCTACTTTCCCCAAAAGCAAGGAGCGTCTCATCGGTCCATCGGCTTTGTTTTTCCATCAAAACGATACTCATTTGCGTCTCAGGAAGCTCGTTCAGACCTCCCTCTCCCCCGAGCCTATTCGCAATTTGGTCCCTCACATTAACTCCCTCGCTGCCTCTACATTAGCGTCTTGGCTCCATGGACATGTTATCAAGACCTTCCAAGAAATGAAAAAGTTTTCTTTTGAAGTCGGAATATTGGCAATTTTTGGACATTTGGAAGCTGTTTACAGAGAAGAGTTACAGAAAAACTATTCCACAGTGAACAGAGGCTATAATTCTTTTCCTACTAACATTCCAGGAACCCCTTACAAAAAGGCACTCACAGCAAGAGAGAGGCTGAGTGAGATCATAAGCAATATTATCTTTGAGAGAAGAAAGGAGAGAAAGGAGCTGCCTGAAAAGAATCTCTTGGGCTATTTACTTAGTTGGAGAAATGAAAAGGGAGAAAGTTTAAGTGATGAGCAGATAGCTGATAATATAATTGGAGTGCTTTTTGCTGCTCAAGATACAACTGCAAGTGCTCTCACATGGATTGTTCAATATCTTCACAATGACCAGAAAGTTCTAGAAGCTGTAAAGGCTGAACAGAAAGCAGTTGAAGAATCTATTAACGCAGGTAACCGACCAATTAGCTGGTCTCAAACAAGGAAAATGACACTTACCAACAAGGTGGTATTAGAGAGCTTGAGAATGGCAAGCATTATATCCTTCACCTATAGGGAAGCTGTGGCAGATGTTGAATACAATGGATATTTAATTCCAAAGGGTTGGAAAGTAATGCCTTTGTTCAGGAATATTCATCACAATCCTGACTACTTTTTTGACCCTCAGAAATTTGATCCTTCAAGATTTGAGGTGGCTCCTAAGCCCAATACTTTCATGCCATTTGGCAGTGGGGTTCATGCCTGCCCTGGAAATGAACTTGCCAAGCTTGAGATCTTGATTATGATCCACCATTTAGTCACCAAATTCAGGTGGGAATTTGAAGGGCACCAAAATGGGATTCAGTATGCCCCATTCCCAGTGCCTTTGCATGGCCTTCCAATCAGAGTTTGGAGATTATCTACTTGA | 1416 | 41.95 | MGENLAPIFIFLLSLVLFWLVFMEIRKKKRRERLLPPGSMGWPLIGETCHLYSQDPSIFFAGKQKRYGEIFKTHILGCPCVMLASPEAARFVLVTKAHLFKPTFPKSKERLIGPSALFFHQNDTHLRLRKLVQTSLSPEPIRNLVPHINSLAASTLASWLHGHVIKTFQEMKKFSFEVGILAIFGHLEAVYREELQKNYSTVNRGYNSFPTNIPGTPYKKALTARERLSEIISNIIFERRKERKELPEKNLLGYLLSWRNEKGESLSDEQIADNIIGVLFAAQDTTASALTWIVQYLHNDQKVLEAVKAEQKAVEESINAGNRPISWSQTRKMTLTNKVVLESLRMASIISFTYREAVADVEYNGYLIPKGWKVMPLFRNIHHNPDYFFDPQKFDPSRFEVAPKPNTFMPFGSGVHACPGNELAKLEILIMIHHLVTKFRWEFEGHQNGIQYAPFPVPLHGLPIRVWRLST | 471 |
Gff information
| Chromosome | Start | End | Strand | Old_gene | Gene | Num |
|---|---|---|---|---|---|---|
| 4 | 4222083 | 4225222 | + | evm.model.ptg000015l.644 | HCH4g0644 | 542888 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| HCH4g0644 | 471 | PRINTS | E-class P450 group I signature | 64 | 83 | IPR002401 | GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro) | |
| HCH4g0644 | 471 | PRINTS | E-class P450 group I signature | 418 | 441 | IPR002401 | GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro) | |
| HCH4g0644 | 471 | PRINTS | E-class P450 group I signature | 377 | 401 | IPR002401 | GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro) | |
| HCH4g0644 | 471 | PRINTS | E-class P450 group I signature | 408 | 418 | IPR002401 | GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro) | |
| HCH4g0644 | 471 | PRINTS | E-class P450 group I signature | 337 | 355 | IPR002401 | GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro) | |
| HCH4g0644 | 471 | PRINTS | E-class P450 group I signature | 270 | 287 | IPR002401 | GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro) | |
| HCH4g0644 | 471 | Pfam | Cytochrome P450 | 36 | 445 | IPR001128 | GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro) | |
| HCH4g0644 | 471 | ProSitePatterns | Cytochrome P450 cysteine heme-iron ligand signature. | 411 | 420 | IPR017972 | GO:0005506(InterPro)|GO:0016705(InterPro) | |
| HCH4g0644 | 471 | PANTHER | CYTOCHROME P450 26 | 35 | 445 | - | GO:0004497(PANTHER)|GO:0010295(PANTHER)|GO:0016125(PANTHER)|GO:0016491(PANTHER) | |
| HCH4g0644 | 471 | FunFam | Abscisic acid 8 | 25 | 468 | - | - | |
| HCH4g0644 | 471 | Gene3D | Cytochrome P450 | 24 | 469 | IPR036396 | GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro) | |
| HCH4g0644 | 471 | CDD | CYP90-like | 64 | 466 | - | - | |
| HCH4g0644 | 471 | PRINTS | P450 superfamily signature | 281 | 298 | IPR001128 | GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro) | |
| HCH4g0644 | 471 | PRINTS | P450 superfamily signature | 409 | 418 | IPR001128 | GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro) | |
| HCH4g0644 | 471 | PRINTS | P450 superfamily signature | 418 | 429 | IPR001128 | GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro) | |
| HCH4g0644 | 471 | PRINTS | P450 superfamily signature | 338 | 349 | IPR001128 | GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro) | |
| HCH4g0644 | 471 | SUPERFAMILY | Cytochrome P450 | 30 | 467 | IPR036396 | GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro) |
Duplication type information
| Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
|---|---|---|---|---|---|---|
| HCH4g0644 | HCH-Chr4:4222083 | HCH7g1495 | HCH-Chr7:47560376 | 5.20E-74 | dispersed | |
| HCH12g0616 | HCH-Chr12:3676969 | HCH4g0644 | HCH-Chr4:4222083 | 3.60E-187 | transposed | |
| HCH14g1060 | HCH-Chr14:37651953 | HCH4g0644 | HCH-Chr4:4222083 | 1.50E-18 | transposed | |
| HCH3g1387 | HCH-Chr3:51854404 | HCH4g0644 | HCH-Chr4:4222083 | 2.90E-143 | transposed | |
| HCH6g1312 | HCH-Chr6:47261063 | HCH4g0644 | HCH-Chr4:4222083 | 5.90E-155 | transposed | |
| HCH4g0644 | HCH-Chr4:4222083 | HCH7g0640 | HCH-Chr7:6303776 | 6.00E-187 | wgd |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| HCH4g0644 | K09843 | - | vvi:100245540 | 691.034 |